Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08035

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08030 and ABZR87_RS08035 are separated by 34 nucleotidesABZR87_RS08035 and ABZR87_RS08040 are separated by 25 nucleotides ABZR87_RS08030: ABZR87_RS08030 - alpha/beta fold hydrolase, at 1,706,017 to 1,707,093 _RS08030 ABZR87_RS08035: ABZR87_RS08035 - nuclear transport factor 2 family protein, at 1,707,128 to 1,707,568 _RS08035 ABZR87_RS08040: ABZR87_RS08040 - lipopolysaccharide heptosyltransferase II, at 1,707,594 to 1,708,619 _RS08040 Position (kb) 1707 1708Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1706.297 kb on + strand, within ABZR87_RS08030at 1706.298 kb on - strand, within ABZR87_RS08030at 1706.390 kb on + strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.460 kb on - strand, within ABZR87_RS08030at 1706.543 kb on + strand, within ABZR87_RS08030at 1706.543 kb on + strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.652 kb on - strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.700 kb on - strand, within ABZR87_RS08030at 1706.802 kb on - strand, within ABZR87_RS08030at 1706.802 kb on - strand, within ABZR87_RS08030at 1707.129 kb on + strandat 1707.129 kb on + strandat 1707.129 kb on + strandat 1707.130 kb on - strandat 1707.130 kb on - strandat 1707.130 kb on - strandat 1707.240 kb on + strand, within ABZR87_RS08035at 1707.240 kb on + strand, within ABZR87_RS08035at 1707.241 kb on - strand, within ABZR87_RS08035at 1707.255 kb on + strand, within ABZR87_RS08035at 1707.255 kb on + strand, within ABZR87_RS08035at 1707.256 kb on - strand, within ABZR87_RS08035at 1707.256 kb on - strand, within ABZR87_RS08035at 1707.517 kb on - strand, within ABZR87_RS08035at 1707.517 kb on - strand, within ABZR87_RS08035at 1707.595 kb on + strandat 1707.595 kb on + strandat 1707.725 kb on + strand, within ABZR87_RS08040at 1707.726 kb on - strand, within ABZR87_RS08040at 1707.726 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1708.054 kb on + strand, within ABZR87_RS08040at 1708.291 kb on + strand, within ABZR87_RS08040at 1708.292 kb on - strand, within ABZR87_RS08040at 1708.292 kb on - strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.407 kb on - strand, within ABZR87_RS08040at 1708.407 kb on - strand, within ABZR87_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,706,297 + ABZR87_RS08030 0.26 -0.4
1,706,298 - ABZR87_RS08030 0.26 +0.2
1,706,390 + ABZR87_RS08030 0.35 -0.1
1,706,391 - ABZR87_RS08030 0.35 +0.3
1,706,391 - ABZR87_RS08030 0.35 +0.2
1,706,391 - ABZR87_RS08030 0.35 +0.2
1,706,459 + ABZR87_RS08030 0.41 -0.7
1,706,459 + ABZR87_RS08030 0.41 +0.9
1,706,459 + ABZR87_RS08030 0.41 -2.0
1,706,459 + ABZR87_RS08030 0.41 -1.5
1,706,460 - ABZR87_RS08030 0.41 +0.3
1,706,543 + ABZR87_RS08030 0.49 +0.1
1,706,543 + ABZR87_RS08030 0.49 +0.1
1,706,574 - ABZR87_RS08030 0.52 -0.6
1,706,574 - ABZR87_RS08030 0.52 +1.0
1,706,574 - ABZR87_RS08030 0.52 +0.5
1,706,574 - ABZR87_RS08030 0.52 +0.2
1,706,652 - ABZR87_RS08030 0.59 +0.2
1,706,653 + ABZR87_RS08030 0.59 -1.1
1,706,653 + ABZR87_RS08030 0.59 -0.2
1,706,653 + ABZR87_RS08030 0.59 -0.4
1,706,653 + ABZR87_RS08030 0.59 -1.1
1,706,653 + ABZR87_RS08030 0.59 -0.6
1,706,653 + ABZR87_RS08030 0.59 +1.7
1,706,653 + ABZR87_RS08030 0.59 -0.3
1,706,654 - ABZR87_RS08030 0.59 -0.6
1,706,654 - ABZR87_RS08030 0.59 +0.0
1,706,654 - ABZR87_RS08030 0.59 +0.6
1,706,654 - ABZR87_RS08030 0.59 -1.7
1,706,654 - ABZR87_RS08030 0.59 +0.5
1,706,699 + ABZR87_RS08030 0.63 -0.3
1,706,699 + ABZR87_RS08030 0.63 -1.4
1,706,699 + ABZR87_RS08030 0.63 -1.2
1,706,700 - ABZR87_RS08030 0.63 -0.8
1,706,802 - ABZR87_RS08030 0.73 +0.6
1,706,802 - ABZR87_RS08030 0.73 +0.7
1,707,129 + +0.5
1,707,129 + +0.2
1,707,129 + -0.7
1,707,130 - -0.5
1,707,130 - +0.3
1,707,130 - +0.5
1,707,240 + ABZR87_RS08035 0.25 -0.3
1,707,240 + ABZR87_RS08035 0.25 -0.3
1,707,241 - ABZR87_RS08035 0.26 +0.1
1,707,255 + ABZR87_RS08035 0.29 -0.9
1,707,255 + ABZR87_RS08035 0.29 -0.3
1,707,256 - ABZR87_RS08035 0.29 -1.0
1,707,256 - ABZR87_RS08035 0.29 -0.4
1,707,517 - ABZR87_RS08035 0.88 -1.0
1,707,517 - ABZR87_RS08035 0.88 -1.1
1,707,595 + -1.3
1,707,595 + -0.8
1,707,725 + ABZR87_RS08040 0.13 +1.5
1,707,726 - ABZR87_RS08040 0.13 +3.0
1,707,726 - ABZR87_RS08040 0.13 +1.6
1,707,778 - ABZR87_RS08040 0.18 +1.7
1,707,778 - ABZR87_RS08040 0.18 +1.3
1,707,778 - ABZR87_RS08040 0.18 +1.4
1,708,054 + ABZR87_RS08040 0.45 +0.3
1,708,291 + ABZR87_RS08040 0.68 +1.0
1,708,292 - ABZR87_RS08040 0.68 -0.2
1,708,292 - ABZR87_RS08040 0.68 +0.7
1,708,360 + ABZR87_RS08040 0.75 +0.4
1,708,360 + ABZR87_RS08040 0.75 +0.4
1,708,360 + ABZR87_RS08040 0.75 +1.2
1,708,361 - ABZR87_RS08040 0.75 +1.0
1,708,361 - ABZR87_RS08040 0.75 +2.0
1,708,361 - ABZR87_RS08040 0.75 +0.1
1,708,361 - ABZR87_RS08040 0.75 +1.9
1,708,361 - ABZR87_RS08040 0.75 -0.3
1,708,407 - ABZR87_RS08040 0.79 +0.7
1,708,407 - ABZR87_RS08040 0.79 +1.2

Or see this region's nucleotide sequence