Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04200

Experiment: Dodecandioic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04195 and ABZR87_RS04200 are separated by 14 nucleotidesABZR87_RS04200 and ABZR87_RS04205 are separated by 80 nucleotides ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427 _RS04195 ABZR87_RS04200: ABZR87_RS04200 - branched-chain amino acid ABC transporter permease, at 877,442 to 878,326 _RS04200 ABZR87_RS04205: ABZR87_RS04205 - ABC transporter substrate-binding protein, at 878,407 to 879,615 _RS04205 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 876.557 kb on + strand, within ABZR87_RS04195at 876.558 kb on - strand, within ABZR87_RS04195at 876.829 kb on + strand, within ABZR87_RS04195at 876.830 kb on - strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.949 kb on + strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.950 kb on - strand, within ABZR87_RS04195at 876.952 kb on + strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 876.953 kb on - strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.060 kb on + strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.061 kb on - strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.099 kb on + strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.100 kb on - strand, within ABZR87_RS04195at 877.213 kb on + strand, within ABZR87_RS04195at 877.214 kb on - strand, within ABZR87_RS04195at 877.225 kb on + strand, within ABZR87_RS04195at 877.225 kb on + strand, within ABZR87_RS04195at 877.226 kb on - strand, within ABZR87_RS04195at 877.226 kb on - strand, within ABZR87_RS04195at 877.276 kb on + strand, within ABZR87_RS04195at 877.394 kb on - strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.402 kb on + strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.403 kb on - strandat 877.531 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.726 kb on - strand, within ABZR87_RS04200at 877.803 kb on + strand, within ABZR87_RS04200at 877.804 kb on - strand, within ABZR87_RS04200at 877.884 kb on + strand, within ABZR87_RS04200at 877.885 kb on - strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.944 kb on + strand, within ABZR87_RS04200at 877.945 kb on - strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.965 kb on + strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 877.966 kb on - strand, within ABZR87_RS04200at 878.025 kb on + strand, within ABZR87_RS04200at 878.026 kb on - strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.043 kb on + strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.044 kb on - strand, within ABZR87_RS04200at 878.124 kb on + strand, within ABZR87_RS04200at 878.140 kb on - strand, within ABZR87_RS04200at 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.253 kb on + strandat 878.254 kb on - strandat 878.254 kb on - strandat 878.401 kb on - strandat 878.489 kb on + strandat 878.490 kb on - strandat 878.490 kb on - strandat 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.537 kb on + strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.538 kb on - strand, within ABZR87_RS04205at 878.585 kb on + strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.586 kb on - strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.669 kb on + strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.670 kb on - strand, within ABZR87_RS04205at 878.735 kb on + strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.736 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.778 kb on - strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.826 kb on + strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.827 kb on - strand, within ABZR87_RS04205at 878.916 kb on + strand, within ABZR87_RS04205at 878.978 kb on + strand, within ABZR87_RS04205at 878.979 kb on - strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.173 kb on + strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.174 kb on - strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.179 kb on + strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205at 879.180 kb on - strand, within ABZR87_RS04205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
remove
876,557 + ABZR87_RS04195 0.12 +0.1
876,558 - ABZR87_RS04195 0.12 +1.0
876,829 + ABZR87_RS04195 0.39 +0.0
876,830 - ABZR87_RS04195 0.39 +0.3
876,949 + ABZR87_RS04195 0.51 +0.9
876,949 + ABZR87_RS04195 0.51 +0.0
876,949 + ABZR87_RS04195 0.51 +0.1
876,949 + ABZR87_RS04195 0.51 +1.9
876,949 + ABZR87_RS04195 0.51 +1.7
876,949 + ABZR87_RS04195 0.51 +2.0
876,950 - ABZR87_RS04195 0.52 +1.2
876,950 - ABZR87_RS04195 0.52 +0.6
876,950 - ABZR87_RS04195 0.52 +0.6
876,950 - ABZR87_RS04195 0.52 +1.0
876,950 - ABZR87_RS04195 0.52 -0.4
876,950 - ABZR87_RS04195 0.52 +0.4
876,952 + ABZR87_RS04195 0.52 +0.1
876,953 - ABZR87_RS04195 0.52 +1.1
876,953 - ABZR87_RS04195 0.52 +0.6
876,953 - ABZR87_RS04195 0.52 -0.2
877,060 + ABZR87_RS04195 0.63 +2.1
877,060 + ABZR87_RS04195 0.63 +0.9
877,060 + ABZR87_RS04195 0.63 -0.2
877,060 + ABZR87_RS04195 0.63 +0.2
877,060 + ABZR87_RS04195 0.63 +0.2
877,060 + ABZR87_RS04195 0.63 +0.2
877,060 + ABZR87_RS04195 0.63 +0.3
877,061 - ABZR87_RS04195 0.63 +0.9
877,061 - ABZR87_RS04195 0.63 +0.4
877,061 - ABZR87_RS04195 0.63 +1.1
877,061 - ABZR87_RS04195 0.63 +1.0
877,099 + ABZR87_RS04195 0.67 -1.0
877,099 + ABZR87_RS04195 0.67 +0.1
877,099 + ABZR87_RS04195 0.67 -0.5
877,099 + ABZR87_RS04195 0.67 -0.1
877,099 + ABZR87_RS04195 0.67 +1.1
877,099 + ABZR87_RS04195 0.67 +0.2
877,099 + ABZR87_RS04195 0.67 -0.4
877,099 + ABZR87_RS04195 0.67 -0.3
877,099 + ABZR87_RS04195 0.67 +0.1
877,100 - ABZR87_RS04195 0.67 +2.5
877,100 - ABZR87_RS04195 0.67 -0.8
877,100 - ABZR87_RS04195 0.67 -0.3
877,213 + ABZR87_RS04195 0.78 -0.8
877,214 - ABZR87_RS04195 0.78 +0.1
877,225 + ABZR87_RS04195 0.79 -0.0
877,225 + ABZR87_RS04195 0.79 -0.2
877,226 - ABZR87_RS04195 0.80 +1.1
877,226 - ABZR87_RS04195 0.80 +1.1
877,276 + ABZR87_RS04195 0.85 +0.3
877,394 - -2.9
877,402 + +0.8
877,402 + -0.4
877,402 + +0.2
877,402 + +0.3
877,402 + +0.9
877,402 + +1.0
877,402 + +1.3
877,403 - +0.9
877,403 - -0.7
877,403 - +0.9
877,403 - +0.0
877,403 - +0.1
877,531 - ABZR87_RS04200 0.10 +1.4
877,726 - ABZR87_RS04200 0.32 +0.1
877,726 - ABZR87_RS04200 0.32 +0.1
877,803 + ABZR87_RS04200 0.41 -0.0
877,804 - ABZR87_RS04200 0.41 -0.3
877,884 + ABZR87_RS04200 0.50 +0.6
877,885 - ABZR87_RS04200 0.50 +0.2
877,944 + ABZR87_RS04200 0.57 +0.1
877,944 + ABZR87_RS04200 0.57 +0.9
877,945 - ABZR87_RS04200 0.57 +0.7
877,965 + ABZR87_RS04200 0.59 -0.2
877,965 + ABZR87_RS04200 0.59 +1.6
877,965 + ABZR87_RS04200 0.59 -0.6
877,965 + ABZR87_RS04200 0.59 +0.9
877,966 - ABZR87_RS04200 0.59 +1.0
877,966 - ABZR87_RS04200 0.59 +0.1
877,966 - ABZR87_RS04200 0.59 -0.7
878,025 + ABZR87_RS04200 0.66 +1.7
878,026 - ABZR87_RS04200 0.66 +0.7
878,043 + ABZR87_RS04200 0.68 +1.3
878,043 + ABZR87_RS04200 0.68 -0.2
878,044 - ABZR87_RS04200 0.68 +0.8
878,044 - ABZR87_RS04200 0.68 +0.8
878,044 - ABZR87_RS04200 0.68 +0.5
878,124 + ABZR87_RS04200 0.77 +0.4
878,140 - ABZR87_RS04200 0.79 +0.2
878,253 + -0.4
878,253 + +0.3
878,253 + -0.5
878,253 + +1.9
878,253 + +0.5
878,253 + -0.7
878,253 + -1.0
878,253 + +1.3
878,254 - +0.1
878,254 - +0.2
878,401 - +1.4
878,489 + -1.4
878,490 - +1.5
878,490 - +1.1
878,537 + ABZR87_RS04205 0.11 -0.4
878,537 + ABZR87_RS04205 0.11 -0.8
878,537 + ABZR87_RS04205 0.11 -1.0
878,537 + ABZR87_RS04205 0.11 -1.6
878,537 + ABZR87_RS04205 0.11 +1.8
878,537 + ABZR87_RS04205 0.11 -0.2
878,538 - ABZR87_RS04205 0.11 +1.1
878,538 - ABZR87_RS04205 0.11 -0.2
878,538 - ABZR87_RS04205 0.11 +1.0
878,538 - ABZR87_RS04205 0.11 -0.2
878,538 - ABZR87_RS04205 0.11 +1.1
878,538 - ABZR87_RS04205 0.11 +0.5
878,585 + ABZR87_RS04205 0.15 -1.6
878,586 - ABZR87_RS04205 0.15 +1.6
878,586 - ABZR87_RS04205 0.15 -0.5
878,586 - ABZR87_RS04205 0.15 +0.5
878,669 + ABZR87_RS04205 0.22 +0.3
878,669 + ABZR87_RS04205 0.22 +0.3
878,669 + ABZR87_RS04205 0.22 -0.6
878,669 + ABZR87_RS04205 0.22 +0.9
878,669 + ABZR87_RS04205 0.22 -0.9
878,670 - ABZR87_RS04205 0.22 -0.8
878,670 - ABZR87_RS04205 0.22 +0.6
878,670 - ABZR87_RS04205 0.22 -0.1
878,670 - ABZR87_RS04205 0.22 +0.6
878,735 + ABZR87_RS04205 0.27 -1.0
878,736 - ABZR87_RS04205 0.27 -0.1
878,736 - ABZR87_RS04205 0.27 +0.1
878,778 - ABZR87_RS04205 0.31 +0.2
878,778 - ABZR87_RS04205 0.31 -1.8
878,826 + ABZR87_RS04205 0.35 +1.1
878,826 + ABZR87_RS04205 0.35 +0.3
878,826 + ABZR87_RS04205 0.35 +1.0
878,826 + ABZR87_RS04205 0.35 -0.3
878,826 + ABZR87_RS04205 0.35 -0.1
878,826 + ABZR87_RS04205 0.35 +0.7
878,826 + ABZR87_RS04205 0.35 -0.8
878,826 + ABZR87_RS04205 0.35 +0.6
878,827 - ABZR87_RS04205 0.35 +0.0
878,827 - ABZR87_RS04205 0.35 +0.7
878,827 - ABZR87_RS04205 0.35 +0.8
878,916 + ABZR87_RS04205 0.42 +0.7
878,978 + ABZR87_RS04205 0.47 +0.7
878,979 - ABZR87_RS04205 0.47 -1.0
879,173 + ABZR87_RS04205 0.63 -1.0
879,173 + ABZR87_RS04205 0.63 -0.8
879,174 - ABZR87_RS04205 0.63 +0.5
879,174 - ABZR87_RS04205 0.63 +1.3
879,174 - ABZR87_RS04205 0.63 +0.7
879,174 - ABZR87_RS04205 0.63 +0.6
879,174 - ABZR87_RS04205 0.63 +0.4
879,174 - ABZR87_RS04205 0.63 +1.1
879,174 - ABZR87_RS04205 0.63 -0.2
879,179 + ABZR87_RS04205 0.64 +0.4
879,179 + ABZR87_RS04205 0.64 +0.2
879,180 - ABZR87_RS04205 0.64 -0.1
879,180 - ABZR87_RS04205 0.64 +1.0
879,180 - ABZR87_RS04205 0.64 +0.4
879,180 - ABZR87_RS04205 0.64 -0.4

Or see this region's nucleotide sequence