Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02370

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02355 and ABZR87_RS02360 are separated by 73 nucleotidesABZR87_RS02360 and ABZR87_RS02365 are separated by 29 nucleotidesABZR87_RS02365 and ABZR87_RS02370 are separated by 72 nucleotidesABZR87_RS02370 and ABZR87_RS02375 are separated by 150 nucleotidesABZR87_RS02375 and ABZR87_RS02380 are separated by 37 nucleotides ABZR87_RS02355: ABZR87_RS02355 - hypothetical protein, at 505,456 to 505,680 _RS02355 ABZR87_RS02360: ABZR87_RS02360 - tRNA-Thr, at 505,754 to 505,829 _RS02360 ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356 _RS02365 ABZR87_RS02370: ABZR87_RS02370 - glutathione S-transferase N-terminal domain-containing protein, at 506,429 to 507,040 _RS02370 ABZR87_RS02375: ABZR87_RS02375 - cytochrome c1, at 507,191 to 507,934 _RS02375 ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375 _RS02380 Position (kb) 506 507 508Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 505.616 kb on - strand, within ABZR87_RS02355at 505.846 kb on - strandat 505.851 kb on - strandat 505.861 kb on - strandat 505.861 kb on - strandat 505.874 kb on + strandat 505.875 kb on - strandat 506.065 kb on + strand, within ABZR87_RS02365at 506.066 kb on - strand, within ABZR87_RS02365at 506.066 kb on - strand, within ABZR87_RS02365at 506.066 kb on - strand, within ABZR87_RS02365at 506.088 kb on + strand, within ABZR87_RS02365at 506.088 kb on + strand, within ABZR87_RS02365at 506.088 kb on + strand, within ABZR87_RS02365at 506.088 kb on + strand, within ABZR87_RS02365at 506.088 kb on + strand, within ABZR87_RS02365at 506.089 kb on - strand, within ABZR87_RS02365at 506.089 kb on - strand, within ABZR87_RS02365at 506.089 kb on - strand, within ABZR87_RS02365at 506.089 kb on - strand, within ABZR87_RS02365at 506.280 kb on + strand, within ABZR87_RS02365at 506.280 kb on + strand, within ABZR87_RS02365at 506.281 kb on - strand, within ABZR87_RS02365at 506.313 kb on + strandat 506.313 kb on + strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.331 kb on + strandat 506.331 kb on + strandat 506.332 kb on - strandat 507.087 kb on - strandat 507.087 kb on - strandat 507.087 kb on - strandat 507.144 kb on - strandat 507.144 kb on - strandat 507.144 kb on - strandat 507.166 kb on - strandat 507.193 kb on - strandat 507.211 kb on - strandat 507.264 kb on - strandat 507.264 kb on - strandat 507.321 kb on + strand, within ABZR87_RS02375at 507.321 kb on + strand, within ABZR87_RS02375at 507.321 kb on + strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.351 kb on + strand, within ABZR87_RS02375at 507.352 kb on - strand, within ABZR87_RS02375at 507.355 kb on - strand, within ABZR87_RS02375at 507.441 kb on + strand, within ABZR87_RS02375at 507.543 kb on + strand, within ABZR87_RS02375at 507.543 kb on + strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.564 kb on + strand, within ABZR87_RS02375at 507.564 kb on + strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.748 kb on - strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.970 kb on + strandat 507.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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505,616 - ABZR87_RS02355 0.71 -0.5
505,846 - +2.1
505,851 - -1.0
505,861 - +0.1
505,861 - -0.4
505,874 + -1.9
505,875 - -0.1
506,065 + ABZR87_RS02365 0.41 -0.9
506,066 - ABZR87_RS02365 0.42 -0.5
506,066 - ABZR87_RS02365 0.42 +0.1
506,066 - ABZR87_RS02365 0.42 +0.2
506,088 + ABZR87_RS02365 0.46 -0.5
506,088 + ABZR87_RS02365 0.46 -1.0
506,088 + ABZR87_RS02365 0.46 -0.3
506,088 + ABZR87_RS02365 0.46 +0.0
506,088 + ABZR87_RS02365 0.46 +1.1
506,089 - ABZR87_RS02365 0.46 -0.2
506,089 - ABZR87_RS02365 0.46 -0.8
506,089 - ABZR87_RS02365 0.46 +0.1
506,089 - ABZR87_RS02365 0.46 +0.0
506,280 + ABZR87_RS02365 0.85 -0.6
506,280 + ABZR87_RS02365 0.85 -0.1
506,281 - ABZR87_RS02365 0.85 +0.4
506,313 + -1.5
506,313 + -1.7
506,314 - +1.6
506,314 - +0.1
506,314 - +1.4
506,314 - -0.6
506,331 + -1.3
506,331 + -2.1
506,332 - -3.1
507,087 - +0.6
507,087 - -1.1
507,087 - +0.6
507,144 - -0.0
507,144 - -0.8
507,144 - +0.4
507,166 - -0.5
507,193 - +0.3
507,211 - -2.9
507,264 - -2.9
507,264 - -1.6
507,321 + ABZR87_RS02375 0.17 -1.0
507,321 + ABZR87_RS02375 0.17 -2.5
507,321 + ABZR87_RS02375 0.17 -1.4
507,322 - ABZR87_RS02375 0.18 -2.8
507,322 - ABZR87_RS02375 0.18 -2.2
507,322 - ABZR87_RS02375 0.18 -1.8
507,322 - ABZR87_RS02375 0.18 -2.0
507,322 - ABZR87_RS02375 0.18 -2.0
507,322 - ABZR87_RS02375 0.18 -2.3
507,351 + ABZR87_RS02375 0.22 -2.6
507,352 - ABZR87_RS02375 0.22 -2.3
507,355 - ABZR87_RS02375 0.22 -2.4
507,441 + ABZR87_RS02375 0.34 -1.0
507,543 + ABZR87_RS02375 0.47 -2.8
507,543 + ABZR87_RS02375 0.47 -1.8
507,544 - ABZR87_RS02375 0.47 -2.9
507,544 - ABZR87_RS02375 0.47 -2.9
507,544 - ABZR87_RS02375 0.47 -2.5
507,544 - ABZR87_RS02375 0.47 -1.9
507,558 + ABZR87_RS02375 0.49 -1.4
507,558 + ABZR87_RS02375 0.49 -3.5
507,558 + ABZR87_RS02375 0.49 -2.0
507,558 + ABZR87_RS02375 0.49 -1.0
507,558 + ABZR87_RS02375 0.49 -2.9
507,559 - ABZR87_RS02375 0.49 -2.3
507,559 - ABZR87_RS02375 0.49 -2.3
507,559 - ABZR87_RS02375 0.49 -1.0
507,559 - ABZR87_RS02375 0.49 -1.7
507,564 + ABZR87_RS02375 0.50 -2.0
507,564 + ABZR87_RS02375 0.50 -1.4
507,565 - ABZR87_RS02375 0.50 -1.0
507,565 - ABZR87_RS02375 0.50 -2.4
507,565 - ABZR87_RS02375 0.50 -4.1
507,565 - ABZR87_RS02375 0.50 -1.4
507,565 - ABZR87_RS02375 0.50 -2.1
507,747 + ABZR87_RS02375 0.75 -3.8
507,747 + ABZR87_RS02375 0.75 -2.7
507,747 + ABZR87_RS02375 0.75 -3.4
507,747 + ABZR87_RS02375 0.75 -3.9
507,747 + ABZR87_RS02375 0.75 -1.1
507,748 - ABZR87_RS02375 0.75 -4.9
507,783 + ABZR87_RS02375 0.80 -0.7
507,783 + ABZR87_RS02375 0.80 -2.0
507,783 + ABZR87_RS02375 0.80 -3.8
507,784 - ABZR87_RS02375 0.80 -0.8
507,784 - ABZR87_RS02375 0.80 -2.5
507,784 - ABZR87_RS02375 0.80 -3.1
507,784 - ABZR87_RS02375 0.80 -2.6
507,784 - ABZR87_RS02375 0.80 -3.6
507,970 + -4.4
507,971 - -0.6

Or see this region's nucleotide sequence