Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00845

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00840 and ABZR87_RS00845 are separated by 369 nucleotidesABZR87_RS00845 and ABZR87_RS00850 are separated by 142 nucleotidesABZR87_RS00850 and ABZR87_RS00855 are separated by 315 nucleotides ABZR87_RS00840: ABZR87_RS00840 - ornithine carbamoyltransferase, at 168,984 to 169,910 _RS00840 ABZR87_RS00845: ABZR87_RS00845 - DUF3579 domain-containing protein, at 170,280 to 170,603 _RS00845 ABZR87_RS00850: ABZR87_RS00850 - 30S ribosomal protein S20, at 170,746 to 171,012 _RS00850 ABZR87_RS00855: ABZR87_RS00855 - murein biosynthesis integral membrane protein MurJ, at 171,328 to 172,881 _RS00855 Position (kb) 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 169.342 kb on + strand, within ABZR87_RS00840at 169.798 kb on + strand, within ABZR87_RS00840at 169.843 kb on + strandat 169.843 kb on + strandat 169.844 kb on - strandat 169.844 kb on - strandat 169.844 kb on - strandat 169.850 kb on - strandat 169.882 kb on + strandat 169.911 kb on - strandat 169.911 kb on - strandat 169.957 kb on - strandat 170.003 kb on + strandat 170.003 kb on + strandat 170.052 kb on - strandat 170.056 kb on + strandat 170.056 kb on + strandat 170.056 kb on + strandat 170.090 kb on + strandat 170.090 kb on + strandat 170.090 kb on + strandat 170.090 kb on + strandat 170.091 kb on - strandat 170.091 kb on - strandat 170.092 kb on + strandat 170.092 kb on + strandat 170.097 kb on + strandat 170.098 kb on - strandat 170.099 kb on + strandat 170.100 kb on - strandat 170.103 kb on - strandat 170.142 kb on - strandat 170.557 kb on + strand, within ABZR87_RS00845at 170.557 kb on + strand, within ABZR87_RS00845at 170.557 kb on + strand, within ABZR87_RS00845at 170.557 kb on + strand, within ABZR87_RS00845at 170.557 kb on + strand, within ABZR87_RS00845at 170.557 kb on + strand, within ABZR87_RS00845at 170.558 kb on - strand, within ABZR87_RS00845at 170.558 kb on - strand, within ABZR87_RS00845at 170.558 kb on - strand, within ABZR87_RS00845at 170.558 kb on - strand, within ABZR87_RS00845at 170.747 kb on + strandat 170.747 kb on + strandat 170.747 kb on + strandat 170.748 kb on - strandat 170.748 kb on - strandat 171.200 kb on + strandat 171.200 kb on + strandat 171.201 kb on - strandat 171.201 kb on - strandat 171.201 kb on - strandat 171.202 kb on + strandat 171.202 kb on + strandat 171.202 kb on + strandat 171.203 kb on - strandat 171.203 kb on - strandat 171.203 kb on - strandat 171.203 kb on - strandat 171.203 kb on - strandat 171.205 kb on + strandat 171.205 kb on + strandat 171.205 kb on + strandat 171.205 kb on + strandat 171.206 kb on - strandat 171.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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169,342 + ABZR87_RS00840 0.39 -1.7
169,798 + ABZR87_RS00840 0.88 -1.7
169,843 + -1.7
169,843 + -1.7
169,844 - -2.5
169,844 - -3.0
169,844 - +0.3
169,850 - -1.7
169,882 + -1.7
169,911 - +0.4
169,911 - +3.7
169,957 - +1.2
170,003 + +0.8
170,003 + +0.3
170,052 - -0.5
170,056 + -1.2
170,056 + -0.3
170,056 + -0.5
170,090 + -1.5
170,090 + -3.4
170,090 + -1.9
170,090 + -1.2
170,091 - -0.1
170,091 - +0.7
170,092 + -0.4
170,092 + -0.8
170,097 + +0.7
170,098 - -1.5
170,099 + +0.3
170,100 - +2.3
170,103 - -0.2
170,142 - -1.6
170,557 + ABZR87_RS00845 0.85 +0.6
170,557 + ABZR87_RS00845 0.85 +1.1
170,557 + ABZR87_RS00845 0.85 -1.2
170,557 + ABZR87_RS00845 0.85 +1.8
170,557 + ABZR87_RS00845 0.85 +0.6
170,557 + ABZR87_RS00845 0.85 +0.3
170,558 - ABZR87_RS00845 0.86 +1.6
170,558 - ABZR87_RS00845 0.86 +3.2
170,558 - ABZR87_RS00845 0.86 +1.7
170,558 - ABZR87_RS00845 0.86 -1.7
170,747 + +0.9
170,747 + +0.7
170,747 + -0.3
170,748 - +0.3
170,748 - -0.4
171,200 + -0.7
171,200 + +0.4
171,201 - -0.1
171,201 - +1.0
171,201 - +0.2
171,202 + +1.7
171,202 + -0.3
171,202 + +0.5
171,203 - -3.7
171,203 - -0.5
171,203 - -0.6
171,203 - -0.7
171,203 - +1.9
171,205 + -0.7
171,205 + -0.9
171,205 + +0.2
171,205 + -1.2
171,206 - +1.4
171,206 - +0.1

Or see this region's nucleotide sequence