Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00205

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00195 and ABZR87_RS00200 are separated by 20 nucleotidesABZR87_RS00200 and ABZR87_RS00205 overlap by 4 nucleotidesABZR87_RS00205 and ABZR87_RS00210 are separated by 17 nucleotides ABZR87_RS00195: ABZR87_RS00195 - sulfate adenylyltransferase subunit CysD, at 38,414 to 39,364 _RS00195 ABZR87_RS00200: ABZR87_RS00200 - phosphoadenylyl-sulfate reductase, at 39,385 to 40,212 _RS00200 ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754 _RS00205 ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433 _RS00210 Position (kb) 40 41Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 39.279 kb on + strandat 39.279 kb on + strandat 39.279 kb on + strandat 39.280 kb on - strandat 39.280 kb on - strandat 39.280 kb on - strandat 39.546 kb on - strand, within ABZR87_RS00200at 39.593 kb on + strand, within ABZR87_RS00200at 39.635 kb on + strand, within ABZR87_RS00200at 39.635 kb on + strand, within ABZR87_RS00200at 39.806 kb on + strand, within ABZR87_RS00200at 39.836 kb on + strand, within ABZR87_RS00200at 39.836 kb on + strand, within ABZR87_RS00200at 39.887 kb on + strand, within ABZR87_RS00200at 40.131 kb on - strandat 40.131 kb on - strandat 40.131 kb on - strandat 40.276 kb on + strand, within ABZR87_RS00205at 40.552 kb on - strand, within ABZR87_RS00205at 40.552 kb on - strand, within ABZR87_RS00205at 40.552 kb on - strand, within ABZR87_RS00205at 40.830 kb on + strandat 40.830 kb on + strandat 40.830 kb on + strandat 40.831 kb on - strandat 40.872 kb on + strandat 41.005 kb on + strand, within ABZR87_RS00210at 41.006 kb on - strand, within ABZR87_RS00210at 41.514 kb on + strand, within ABZR87_RS00210at 41.697 kb on + strand, within ABZR87_RS00210at 41.698 kb on - strand, within ABZR87_RS00210at 41.698 kb on - strand, within ABZR87_RS00210at 41.698 kb on - strand, within ABZR87_RS00210at 41.727 kb on + strand, within ABZR87_RS00210at 41.727 kb on + strand, within ABZR87_RS00210at 41.751 kb on + strand, within ABZR87_RS00210at 41.751 kb on + strand, within ABZR87_RS00210at 41.752 kb on - strand, within ABZR87_RS00210

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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39,279 + -2.2
39,279 + -2.0
39,279 + -3.8
39,280 - -3.2
39,280 - -3.6
39,280 - -3.2
39,546 - ABZR87_RS00200 0.19 -2.2
39,593 + ABZR87_RS00200 0.25 -4.2
39,635 + ABZR87_RS00200 0.30 -3.6
39,635 + ABZR87_RS00200 0.30 -3.1
39,806 + ABZR87_RS00200 0.51 -3.3
39,836 + ABZR87_RS00200 0.54 -3.2
39,836 + ABZR87_RS00200 0.54 -3.4
39,887 + ABZR87_RS00200 0.61 -4.3
40,131 - -3.9
40,131 - -0.7
40,131 - +1.3
40,276 + ABZR87_RS00205 0.12 -5.4
40,552 - ABZR87_RS00205 0.63 -3.0
40,552 - ABZR87_RS00205 0.63 -4.2
40,552 - ABZR87_RS00205 0.63 -2.8
40,830 + -1.7
40,830 + -3.7
40,830 + -3.6
40,831 - -3.7
40,872 + -2.2
41,005 + ABZR87_RS00210 0.14 -3.0
41,006 - ABZR87_RS00210 0.14 -0.8
41,514 + ABZR87_RS00210 0.45 -4.8
41,697 + ABZR87_RS00210 0.56 -1.7
41,698 - ABZR87_RS00210 0.56 -5.1
41,698 - ABZR87_RS00210 0.56 -2.5
41,698 - ABZR87_RS00210 0.56 -3.6
41,727 + ABZR87_RS00210 0.57 -4.7
41,727 + ABZR87_RS00210 0.57 -3.5
41,751 + ABZR87_RS00210 0.59 -3.4
41,751 + ABZR87_RS00210 0.59 -4.1
41,752 - ABZR87_RS00210 0.59 -2.5

Or see this region's nucleotide sequence