Experiment: BG11 with perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysT and orf81 are separated by 23 nucleotides orf81 and cysR are separated by 27 nucleotides cysR and cysW are separated by 45 nucleotides cysW and sbpA are separated by 159 nucleotides
Synpcc7942_1682: cysT - Sulphate transport system permease protein 2, at 1,750,203 to 1,751,039
cysT
Synpcc7942_1683: orf81 - hypothetical protein, at 1,751,063 to 1,751,308
orf81
Synpcc7942_1684: cysR - putative transcriptional regulator, Crp/Fnr family, at 1,751,336 to 1,751,956
cysR
Synpcc7942_1685: cysW - Sulphate transport system permease protein 2, at 1,752,002 to 1,752,862
cysW
Synpcc7942_1686: sbpA - Thiosulphate-binding protein, at 1,753,022 to 1,754,047
sbpA
Position (kb) 1752
1753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1751.051 kb on - strand at 1751.053 kb on + strand at 1751.061 kb on - strand at 1751.129 kb on - strand, within orf81 at 1751.192 kb on + strand, within orf81 at 1751.202 kb on + strand, within orf81 at 1751.221 kb on - strand, within orf81 at 1751.228 kb on + strand, within orf81 at 1751.234 kb on - strand, within orf81 at 1751.234 kb on - strand, within orf81 at 1751.236 kb on + strand, within orf81 at 1751.244 kb on - strand, within orf81 at 1751.254 kb on - strand, within orf81 at 1751.263 kb on - strand, within orf81 at 1751.271 kb on + strand, within orf81 at 1751.278 kb on + strand, within orf81 at 1751.279 kb on - strand, within orf81 at 1751.302 kb on + strand at 1751.333 kb on - strand at 1751.373 kb on + strand at 1751.397 kb on + strand at 1751.401 kb on - strand, within cysR at 1751.426 kb on + strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.429 kb on - strand, within cysR at 1751.434 kb on - strand, within cysR at 1751.435 kb on + strand, within cysR at 1751.436 kb on + strand, within cysR at 1751.436 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.465 kb on + strand, within cysR at 1751.476 kb on + strand, within cysR at 1751.478 kb on + strand, within cysR at 1751.478 kb on + strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.486 kb on - strand, within cysR at 1751.498 kb on + strand, within cysR at 1751.511 kb on + strand, within cysR at 1751.511 kb on + strand, within cysR at 1751.519 kb on - strand at 1751.519 kb on - strand, within cysR at 1751.519 kb on - strand, within cysR at 1751.549 kb on + strand, within cysR at 1751.554 kb on + strand, within cysR at 1751.557 kb on - strand, within cysR at 1751.621 kb on + strand, within cysR at 1751.652 kb on + strand, within cysR at 1751.662 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.664 kb on - strand, within cysR at 1751.674 kb on + strand, within cysR at 1751.690 kb on - strand, within cysR at 1751.743 kb on - strand at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.760 kb on - strand, within cysR at 1751.772 kb on + strand, within cysR at 1751.773 kb on + strand, within cysR at 1751.773 kb on - strand, within cysR at 1751.780 kb on - strand, within cysR at 1751.800 kb on - strand, within cysR at 1751.800 kb on - strand, within cysR at 1751.813 kb on + strand, within cysR at 1751.825 kb on + strand, within cysR at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.924 kb on - strand at 1751.929 kb on + strand at 1751.944 kb on + strand at 1751.944 kb on + strand at 1751.951 kb on + strand at 1751.959 kb on - strand at 1751.959 kb on - strand at 1751.967 kb on + strand at 1751.975 kb on - strand at 1751.975 kb on - strand at 1751.982 kb on - strand at 1752.047 kb on - strand at 1752.047 kb on - strand at 1752.047 kb on - strand at 1752.067 kb on - strand at 1752.073 kb on - strand at 1752.091 kb on + strand, within cysW at 1752.147 kb on + strand, within cysW at 1752.150 kb on + strand, within cysW at 1752.218 kb on + strand, within cysW at 1752.218 kb on + strand at 1752.226 kb on - strand, within cysW at 1752.235 kb on - strand, within cysW at 1752.466 kb on - strand, within cysW at 1752.580 kb on - strand, within cysW at 1752.587 kb on - strand, within cysW at 1752.598 kb on + strand at 1752.603 kb on + strand, within cysW at 1752.608 kb on + strand, within cysW at 1752.627 kb on + strand, within cysW at 1752.632 kb on + strand, within cysW at 1752.632 kb on + strand, within cysW at 1752.632 kb on + strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.640 kb on - strand, within cysW at 1752.712 kb on - strand, within cysW at 1752.712 kb on - strand, within cysW at 1752.760 kb on + strand, within cysW at 1752.760 kb on + strand, within cysW at 1752.760 kb on + strand, within cysW at 1752.760 kb on + strand, within cysW at 1752.760 kb on + strand, within cysW at 1752.768 kb on - strand, within cysW at 1752.768 kb on - strand, within cysW at 1752.768 kb on - strand, within cysW at 1752.768 kb on - strand at 1752.768 kb on - strand, within cysW at 1753.038 kb on + strand at 1753.051 kb on - strand at 1753.051 kb on - strand at 1753.110 kb on - strand at 1753.146 kb on + strand, within sbpA at 1753.237 kb on + strand, within sbpA at 1753.264 kb on - strand, within sbpA at 1753.271 kb on + strand, within sbpA at 1753.271 kb on + strand, within sbpA at 1753.309 kb on - strand, within sbpA at 1753.314 kb on - strand, within sbpA at 1753.343 kb on + strand, within sbpA at 1753.356 kb on - strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.375 kb on + strand, within sbpA at 1753.547 kb on + strand, within sbpA at 1753.716 kb on - strand, within sbpA at 1753.716 kb on - strand, within sbpA at 1753.828 kb on + strand, within sbpA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with perchlorate 50 mM remove 1,751,051 - +0.2 1,751,053 + +0.2 1,751,061 - +0.1 1,751,129 - orf81 Synpcc7942_1683 0.27 -0.0 1,751,192 + orf81 Synpcc7942_1683 0.52 +1.5 1,751,202 + orf81 Synpcc7942_1683 0.57 +0.3 1,751,221 - orf81 Synpcc7942_1683 0.64 -1.4 1,751,228 + orf81 Synpcc7942_1683 0.67 +0.4 1,751,234 - orf81 Synpcc7942_1683 0.70 -0.3 1,751,234 - orf81 Synpcc7942_1683 0.70 -1.9 1,751,236 + orf81 Synpcc7942_1683 0.70 +1.3 1,751,244 - orf81 Synpcc7942_1683 0.74 +0.5 1,751,254 - orf81 Synpcc7942_1683 0.78 -1.2 1,751,263 - orf81 Synpcc7942_1683 0.81 +0.6 1,751,271 + orf81 Synpcc7942_1683 0.85 -0.1 1,751,278 + orf81 Synpcc7942_1683 0.87 -1.6 1,751,279 - orf81 Synpcc7942_1683 0.88 +0.6 1,751,302 + +0.7 1,751,333 - -0.4 1,751,373 + -0.1 1,751,397 + -0.2 1,751,401 - cysR Synpcc7942_1684 0.10 -0.4 1,751,426 + cysR Synpcc7942_1684 0.14 -1.2 1,751,429 - cysR Synpcc7942_1684 0.15 +0.8 1,751,429 - cysR Synpcc7942_1684 0.15 -0.1 1,751,429 - cysR Synpcc7942_1684 0.15 +0.9 1,751,434 - cysR Synpcc7942_1684 0.16 +0.6 1,751,435 + cysR Synpcc7942_1684 0.16 +1.0 1,751,436 + cysR Synpcc7942_1684 0.16 -0.8 1,751,436 + cysR Synpcc7942_1684 0.16 +0.7 1,751,465 + cysR Synpcc7942_1684 0.21 +1.0 1,751,465 + cysR Synpcc7942_1684 0.21 +0.7 1,751,465 + cysR Synpcc7942_1684 0.21 -1.0 1,751,465 + cysR Synpcc7942_1684 0.21 -0.4 1,751,476 + cysR Synpcc7942_1684 0.23 +2.5 1,751,478 + cysR Synpcc7942_1684 0.23 -0.1 1,751,478 + cysR Synpcc7942_1684 0.23 -0.4 1,751,486 - cysR Synpcc7942_1684 0.24 +0.9 1,751,486 - cysR Synpcc7942_1684 0.24 -0.6 1,751,486 - cysR Synpcc7942_1684 0.24 -0.3 1,751,486 - cysR Synpcc7942_1684 0.24 +1.0 1,751,498 + cysR Synpcc7942_1684 0.26 +0.1 1,751,511 + cysR Synpcc7942_1684 0.28 -1.6 1,751,511 + cysR Synpcc7942_1684 0.28 +0.3 1,751,519 - +0.6 1,751,519 - cysR Synpcc7942_1684 0.29 -0.0 1,751,519 - cysR Synpcc7942_1684 0.29 -0.4 1,751,549 + cysR Synpcc7942_1684 0.34 -1.6 1,751,554 + cysR Synpcc7942_1684 0.35 -0.5 1,751,557 - cysR Synpcc7942_1684 0.36 -0.1 1,751,621 + cysR Synpcc7942_1684 0.46 +0.0 1,751,652 + cysR Synpcc7942_1684 0.51 +0.6 1,751,662 - cysR Synpcc7942_1684 0.52 +1.3 1,751,664 - cysR Synpcc7942_1684 0.53 +0.6 1,751,664 - cysR Synpcc7942_1684 0.53 -1.7 1,751,664 - cysR Synpcc7942_1684 0.53 -0.0 1,751,674 + cysR Synpcc7942_1684 0.54 -0.5 1,751,690 - cysR Synpcc7942_1684 0.57 +0.6 1,751,743 - -0.7 1,751,760 - cysR Synpcc7942_1684 0.68 +0.5 1,751,760 - cysR Synpcc7942_1684 0.68 -1.2 1,751,760 - cysR Synpcc7942_1684 0.68 +0.5 1,751,760 - cysR Synpcc7942_1684 0.68 +0.8 1,751,760 - cysR Synpcc7942_1684 0.68 +0.0 1,751,772 + cysR Synpcc7942_1684 0.70 +0.9 1,751,773 + cysR Synpcc7942_1684 0.70 +0.7 1,751,773 - cysR Synpcc7942_1684 0.70 -0.6 1,751,780 - cysR Synpcc7942_1684 0.71 -0.3 1,751,800 - cysR Synpcc7942_1684 0.75 +0.4 1,751,800 - cysR Synpcc7942_1684 0.75 -0.2 1,751,813 + cysR Synpcc7942_1684 0.77 -0.4 1,751,825 + cysR Synpcc7942_1684 0.79 +1.2 1,751,924 - -2.6 1,751,924 - -2.2 1,751,924 - -0.6 1,751,924 - -0.6 1,751,929 + -1.5 1,751,944 + -1.0 1,751,944 + -2.5 1,751,951 + -0.5 1,751,959 - -1.6 1,751,959 - -1.3 1,751,967 + -1.6 1,751,975 - +0.0 1,751,975 - +0.3 1,751,982 - -0.7 1,752,047 - -2.7 1,752,047 - -0.2 1,752,047 - -2.2 1,752,067 - -1.8 1,752,073 - -0.9 1,752,091 + cysW Synpcc7942_1685 0.10 -3.9 1,752,147 + cysW Synpcc7942_1685 0.17 -1.2 1,752,150 + cysW Synpcc7942_1685 0.17 -3.4 1,752,218 + cysW Synpcc7942_1685 0.25 +1.6 1,752,218 + +0.0 1,752,226 - cysW Synpcc7942_1685 0.26 -2.2 1,752,235 - cysW Synpcc7942_1685 0.27 -0.3 1,752,466 - cysW Synpcc7942_1685 0.54 -0.7 1,752,580 - cysW Synpcc7942_1685 0.67 -2.9 1,752,587 - cysW Synpcc7942_1685 0.68 -1.7 1,752,598 + -0.4 1,752,603 + cysW Synpcc7942_1685 0.70 -2.9 1,752,608 + cysW Synpcc7942_1685 0.70 -2.6 1,752,627 + cysW Synpcc7942_1685 0.73 -2.5 1,752,632 + cysW Synpcc7942_1685 0.73 -3.4 1,752,632 + cysW Synpcc7942_1685 0.73 -2.6 1,752,632 + cysW Synpcc7942_1685 0.73 +0.6 1,752,640 - cysW Synpcc7942_1685 0.74 -4.2 1,752,640 - cysW Synpcc7942_1685 0.74 -3.7 1,752,640 - cysW Synpcc7942_1685 0.74 +0.0 1,752,640 - cysW Synpcc7942_1685 0.74 -2.3 1,752,640 - cysW Synpcc7942_1685 0.74 +0.0 1,752,640 - cysW Synpcc7942_1685 0.74 -1.6 1,752,712 - cysW Synpcc7942_1685 0.82 -3.9 1,752,712 - cysW Synpcc7942_1685 0.82 -2.4 1,752,760 + cysW Synpcc7942_1685 0.88 -3.2 1,752,760 + cysW Synpcc7942_1685 0.88 -3.2 1,752,760 + cysW Synpcc7942_1685 0.88 -3.2 1,752,760 + cysW Synpcc7942_1685 0.88 -1.6 1,752,760 + cysW Synpcc7942_1685 0.88 -2.1 1,752,768 - cysW Synpcc7942_1685 0.89 -1.4 1,752,768 - cysW Synpcc7942_1685 0.89 -1.9 1,752,768 - cysW Synpcc7942_1685 0.89 -1.6 1,752,768 - -1.2 1,752,768 - cysW Synpcc7942_1685 0.89 -2.4 1,753,038 + -0.0 1,753,051 - -0.2 1,753,051 - +1.5 1,753,110 - +0.7 1,753,146 + sbpA Synpcc7942_1686 0.12 +0.1 1,753,237 + sbpA Synpcc7942_1686 0.21 +1.1 1,753,264 - sbpA Synpcc7942_1686 0.24 +1.4 1,753,271 + sbpA Synpcc7942_1686 0.24 +1.4 1,753,271 + sbpA Synpcc7942_1686 0.24 -0.1 1,753,309 - sbpA Synpcc7942_1686 0.28 +0.1 1,753,314 - sbpA Synpcc7942_1686 0.28 +0.3 1,753,343 + sbpA Synpcc7942_1686 0.31 +0.2 1,753,356 - sbpA Synpcc7942_1686 0.33 -0.6 1,753,375 + sbpA Synpcc7942_1686 0.34 -1.7 1,753,375 + sbpA Synpcc7942_1686 0.34 +0.7 1,753,375 + sbpA Synpcc7942_1686 0.34 +0.1 1,753,375 + sbpA Synpcc7942_1686 0.34 +2.0 1,753,375 + sbpA Synpcc7942_1686 0.34 +0.2 1,753,375 + sbpA Synpcc7942_1686 0.34 -0.5 1,753,375 + sbpA Synpcc7942_1686 0.34 +0.8 1,753,375 + sbpA Synpcc7942_1686 0.34 -0.6 1,753,375 + sbpA Synpcc7942_1686 0.34 -0.3 1,753,547 + sbpA Synpcc7942_1686 0.51 -0.2 1,753,716 - sbpA Synpcc7942_1686 0.68 +0.5 1,753,716 - sbpA Synpcc7942_1686 0.68 -0.1 1,753,828 + sbpA Synpcc7942_1686 0.79 -0.4
Or see this region's nucleotide sequence