Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09420

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09390 and PGA1_c09400 are separated by 156 nucleotidesPGA1_c09400 and PGA1_c09410 are separated by 235 nucleotidesPGA1_c09410 and PGA1_c09420 are separated by 115 nucleotidesPGA1_c09420 and PGA1_c09430 are separated by 0 nucleotides PGA1_c09390: PGA1_c09390 - modification methylase NaeI, at 957,663 to 958,637 _c09390 PGA1_c09400: PGA1_c09400 - tRNA-Gly, at 958,794 to 958,868 _c09400 PGA1_c09410: PGA1_c09410 - hypothetical protein, at 959,104 to 959,310 _c09410 PGA1_c09420: PGA1_c09420 - pyruvate carboxylase Pyc, at 959,426 to 962,992 _c09420 PGA1_c09430: PGA1_c09430 - l-lactate dehydrogenase IldD, at 962,993 to 964,198 _c09430 Position (kb) 959 960 961 962 963Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 958.716 kb on + strandat 958.716 kb on + strandat 958.716 kb on + strandat 958.724 kb on - strandat 958.906 kb on - strandat 959.112 kb on + strandat 959.120 kb on - strandat 959.120 kb on - strandat 959.120 kb on - strandat 959.120 kb on - strandat 959.168 kb on - strand, within PGA1_c09410at 959.168 kb on - strand, within PGA1_c09410at 959.213 kb on + strand, within PGA1_c09410at 959.294 kb on + strandat 959.304 kb on + strandat 959.304 kb on + strandat 959.312 kb on - strandat 959.312 kb on - strandat 959.402 kb on + strandat 959.429 kb on + strandat 959.487 kb on + strandat 959.487 kb on + strandat 959.487 kb on + strandat 959.495 kb on - strandat 959.495 kb on - strandat 959.495 kb on - strandat 959.600 kb on + strandat 959.607 kb on + strandat 959.610 kb on + strandat 959.645 kb on - strandat 959.658 kb on + strandat 959.666 kb on - strandat 959.669 kb on + strandat 959.684 kb on - strandat 959.748 kb on + strandat 959.756 kb on - strandat 959.833 kb on + strand, within PGA1_c09420at 959.833 kb on + strand, within PGA1_c09420at 959.841 kb on - strand, within PGA1_c09420at 959.905 kb on + strand, within PGA1_c09420at 959.976 kb on + strand, within PGA1_c09420at 959.994 kb on - strand, within PGA1_c09420at 959.994 kb on - strand, within PGA1_c09420at 960.002 kb on - strand, within PGA1_c09420at 960.082 kb on + strand, within PGA1_c09420at 960.169 kb on - strand, within PGA1_c09420at 960.185 kb on + strand, within PGA1_c09420at 960.193 kb on - strand, within PGA1_c09420at 960.193 kb on - strand, within PGA1_c09420at 960.193 kb on - strand, within PGA1_c09420at 960.198 kb on - strand, within PGA1_c09420at 960.218 kb on + strand, within PGA1_c09420at 960.229 kb on + strand, within PGA1_c09420at 960.282 kb on + strand, within PGA1_c09420at 960.282 kb on + strand, within PGA1_c09420at 960.287 kb on + strand, within PGA1_c09420at 960.287 kb on + strand, within PGA1_c09420at 960.287 kb on + strand, within PGA1_c09420at 960.287 kb on + strand, within PGA1_c09420at 960.287 kb on + strand, within PGA1_c09420at 960.332 kb on + strand, within PGA1_c09420at 960.340 kb on + strand, within PGA1_c09420at 960.340 kb on - strand, within PGA1_c09420at 960.340 kb on - strand, within PGA1_c09420at 960.340 kb on - strand, within PGA1_c09420at 960.347 kb on - strand, within PGA1_c09420at 960.347 kb on - strand, within PGA1_c09420at 960.379 kb on + strand, within PGA1_c09420at 960.424 kb on + strand, within PGA1_c09420at 960.501 kb on + strand, within PGA1_c09420at 960.501 kb on + strand, within PGA1_c09420at 960.501 kb on + strand, within PGA1_c09420at 960.509 kb on - strand, within PGA1_c09420at 960.509 kb on - strand, within PGA1_c09420at 960.534 kb on - strand, within PGA1_c09420at 960.539 kb on - strand, within PGA1_c09420at 960.562 kb on - strand, within PGA1_c09420at 960.591 kb on - strand, within PGA1_c09420at 960.628 kb on + strand, within PGA1_c09420at 960.628 kb on + strand, within PGA1_c09420at 960.628 kb on + strand, within PGA1_c09420at 960.628 kb on + strand, within PGA1_c09420at 960.628 kb on + strand, within PGA1_c09420at 960.636 kb on - strand, within PGA1_c09420at 960.636 kb on - strand, within PGA1_c09420at 960.636 kb on - strand, within PGA1_c09420at 960.636 kb on - strand, within PGA1_c09420at 960.636 kb on - strand, within PGA1_c09420at 960.684 kb on + strand, within PGA1_c09420at 960.692 kb on - strand, within PGA1_c09420at 960.711 kb on + strand, within PGA1_c09420at 960.711 kb on + strand, within PGA1_c09420at 960.721 kb on - strand, within PGA1_c09420at 960.845 kb on + strand, within PGA1_c09420at 960.903 kb on - strand, within PGA1_c09420at 960.940 kb on + strand, within PGA1_c09420at 960.943 kb on - strand, within PGA1_c09420at 960.943 kb on - strand, within PGA1_c09420at 960.964 kb on + strand, within PGA1_c09420at 960.979 kb on - strand, within PGA1_c09420at 961.011 kb on - strand, within PGA1_c09420at 961.139 kb on - strand, within PGA1_c09420at 961.144 kb on - strand, within PGA1_c09420at 961.195 kb on + strand, within PGA1_c09420at 961.335 kb on + strand, within PGA1_c09420at 961.459 kb on + strand, within PGA1_c09420at 961.498 kb on + strand, within PGA1_c09420at 961.619 kb on + strand, within PGA1_c09420at 961.634 kb on + strand, within PGA1_c09420at 961.661 kb on - strand, within PGA1_c09420at 961.715 kb on + strand, within PGA1_c09420at 961.715 kb on + strand, within PGA1_c09420at 961.715 kb on + strand, within PGA1_c09420at 961.716 kb on + strand, within PGA1_c09420at 961.728 kb on - strand, within PGA1_c09420at 961.733 kb on - strand, within PGA1_c09420at 961.741 kb on - strand, within PGA1_c09420at 961.753 kb on - strand, within PGA1_c09420at 961.773 kb on + strand, within PGA1_c09420at 961.810 kb on + strand, within PGA1_c09420at 961.818 kb on - strand, within PGA1_c09420at 961.829 kb on + strand, within PGA1_c09420at 961.829 kb on + strand, within PGA1_c09420at 961.837 kb on - strand, within PGA1_c09420at 961.837 kb on - strand, within PGA1_c09420at 961.837 kb on - strand, within PGA1_c09420at 961.845 kb on + strand, within PGA1_c09420at 961.845 kb on + strand, within PGA1_c09420at 961.853 kb on - strand, within PGA1_c09420at 961.878 kb on + strand, within PGA1_c09420at 962.115 kb on + strand, within PGA1_c09420at 962.115 kb on - strand, within PGA1_c09420at 962.127 kb on - strand, within PGA1_c09420at 962.144 kb on - strand, within PGA1_c09420at 962.167 kb on - strand, within PGA1_c09420at 962.167 kb on - strand, within PGA1_c09420at 962.172 kb on - strand, within PGA1_c09420at 962.174 kb on - strand, within PGA1_c09420at 962.182 kb on - strand, within PGA1_c09420at 962.267 kb on + strand, within PGA1_c09420at 962.267 kb on + strand, within PGA1_c09420at 962.367 kb on + strand, within PGA1_c09420at 962.444 kb on + strand, within PGA1_c09420at 962.540 kb on - strand, within PGA1_c09420at 962.616 kb on - strand, within PGA1_c09420at 962.616 kb on - strand, within PGA1_c09420at 962.616 kb on - strand, within PGA1_c09420at 962.629 kb on + strand, within PGA1_c09420at 962.693 kb on + strandat 962.743 kb on + strandat 962.743 kb on + strandat 962.780 kb on + strandat 962.872 kb on + strandat 962.945 kb on - strandat 962.956 kb on + strandat 963.057 kb on + strandat 963.074 kb on - strandat 963.202 kb on + strand, within PGA1_c09430at 963.202 kb on + strand, within PGA1_c09430at 963.202 kb on + strand, within PGA1_c09430at 963.202 kb on + strand, within PGA1_c09430at 963.210 kb on - strand, within PGA1_c09430at 963.223 kb on + strand, within PGA1_c09430at 963.326 kb on - strand, within PGA1_c09430at 963.341 kb on - strand, within PGA1_c09430at 963.381 kb on - strand, within PGA1_c09430at 963.416 kb on + strand, within PGA1_c09430at 963.458 kb on + strand, within PGA1_c09430at 963.477 kb on - strand, within PGA1_c09430at 963.481 kb on + strand, within PGA1_c09430at 963.486 kb on - strand, within PGA1_c09430at 963.527 kb on + strand, within PGA1_c09430at 963.527 kb on + strand, within PGA1_c09430at 963.527 kb on + strand, within PGA1_c09430at 963.535 kb on - strand, within PGA1_c09430at 963.569 kb on - strand, within PGA1_c09430at 963.585 kb on - strand, within PGA1_c09430at 963.595 kb on + strand, within PGA1_c09430at 963.605 kb on + strand, within PGA1_c09430at 963.608 kb on - strand, within PGA1_c09430at 963.674 kb on + strand, within PGA1_c09430at 963.706 kb on + strand, within PGA1_c09430at 963.714 kb on - strand, within PGA1_c09430at 963.872 kb on + strand, within PGA1_c09430at 963.875 kb on - strand, within PGA1_c09430at 963.886 kb on + strand, within PGA1_c09430at 963.894 kb on - strand, within PGA1_c09430at 963.915 kb on - strand, within PGA1_c09430at 963.963 kb on - strand, within PGA1_c09430

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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958,716 + +0.9
958,716 + +0.3
958,716 + -1.7
958,724 - -0.2
958,906 - -0.3
959,112 + -0.2
959,120 - -0.4
959,120 - -0.2
959,120 - -1.1
959,120 - -0.2
959,168 - PGA1_c09410 0.31 +1.0
959,168 - PGA1_c09410 0.31 +0.0
959,213 + PGA1_c09410 0.53 +1.0
959,294 + +0.2
959,304 + +0.2
959,304 + -0.4
959,312 - -0.5
959,312 - -0.4
959,402 + -0.5
959,429 + -3.1
959,487 + -1.5
959,487 + -2.0
959,487 + -2.6
959,495 - -1.8
959,495 - -2.5
959,495 - -2.1
959,600 + -2.5
959,607 + -1.5
959,610 + -3.1
959,645 - -3.6
959,658 + -2.7
959,666 - -3.4
959,669 + -0.7
959,684 - -3.2
959,748 + -3.7
959,756 - -1.5
959,833 + PGA1_c09420 0.11 -1.7
959,833 + PGA1_c09420 0.11 -2.7
959,841 - PGA1_c09420 0.12 -3.1
959,905 + PGA1_c09420 0.13 -0.7
959,976 + PGA1_c09420 0.15 -4.2
959,994 - PGA1_c09420 0.16 -1.7
959,994 - PGA1_c09420 0.16 -2.7
960,002 - PGA1_c09420 0.16 -1.7
960,082 + PGA1_c09420 0.18 -1.8
960,169 - PGA1_c09420 0.21 -2.5
960,185 + PGA1_c09420 0.21 -2.4
960,193 - PGA1_c09420 0.22 -2.8
960,193 - PGA1_c09420 0.22 -2.1
960,193 - PGA1_c09420 0.22 -3.1
960,198 - PGA1_c09420 0.22 +0.3
960,218 + PGA1_c09420 0.22 -2.5
960,229 + PGA1_c09420 0.23 -2.7
960,282 + PGA1_c09420 0.24 -2.2
960,282 + PGA1_c09420 0.24 -1.8
960,287 + PGA1_c09420 0.24 -2.7
960,287 + PGA1_c09420 0.24 -2.7
960,287 + PGA1_c09420 0.24 -1.4
960,287 + PGA1_c09420 0.24 -1.7
960,287 + PGA1_c09420 0.24 -2.6
960,332 + PGA1_c09420 0.25 -2.6
960,340 + PGA1_c09420 0.26 -0.5
960,340 - PGA1_c09420 0.26 -3.2
960,340 - PGA1_c09420 0.26 -3.5
960,340 - PGA1_c09420 0.26 -2.7
960,347 - PGA1_c09420 0.26 -3.9
960,347 - PGA1_c09420 0.26 -2.8
960,379 + PGA1_c09420 0.27 -2.1
960,424 + PGA1_c09420 0.28 -3.1
960,501 + PGA1_c09420 0.30 -2.6
960,501 + PGA1_c09420 0.30 -2.0
960,501 + PGA1_c09420 0.30 -2.4
960,509 - PGA1_c09420 0.30 -1.2
960,509 - PGA1_c09420 0.30 -2.9
960,534 - PGA1_c09420 0.31 -1.2
960,539 - PGA1_c09420 0.31 -0.6
960,562 - PGA1_c09420 0.32 -3.5
960,591 - PGA1_c09420 0.33 -1.4
960,628 + PGA1_c09420 0.34 -2.4
960,628 + PGA1_c09420 0.34 -2.1
960,628 + PGA1_c09420 0.34 -1.0
960,628 + PGA1_c09420 0.34 -3.1
960,628 + PGA1_c09420 0.34 -1.6
960,636 - PGA1_c09420 0.34 -2.5
960,636 - PGA1_c09420 0.34 -3.3
960,636 - PGA1_c09420 0.34 -2.5
960,636 - PGA1_c09420 0.34 -3.6
960,636 - PGA1_c09420 0.34 -2.7
960,684 + PGA1_c09420 0.35 -3.8
960,692 - PGA1_c09420 0.35 -2.1
960,711 + PGA1_c09420 0.36 -2.6
960,711 + PGA1_c09420 0.36 -2.4
960,721 - PGA1_c09420 0.36 -4.1
960,845 + PGA1_c09420 0.40 -2.1
960,903 - PGA1_c09420 0.41 -1.7
960,940 + PGA1_c09420 0.42 -3.5
960,943 - PGA1_c09420 0.43 -2.6
960,943 - PGA1_c09420 0.43 -2.5
960,964 + PGA1_c09420 0.43 -4.0
960,979 - PGA1_c09420 0.44 -0.7
961,011 - PGA1_c09420 0.44 -2.2
961,139 - PGA1_c09420 0.48 -0.2
961,144 - PGA1_c09420 0.48 -3.0
961,195 + PGA1_c09420 0.50 -2.9
961,335 + PGA1_c09420 0.54 -2.2
961,459 + PGA1_c09420 0.57 -2.4
961,498 + PGA1_c09420 0.58 -1.4
961,619 + PGA1_c09420 0.61 -1.1
961,634 + PGA1_c09420 0.62 -2.5
961,661 - PGA1_c09420 0.63 -2.2
961,715 + PGA1_c09420 0.64 -1.2
961,715 + PGA1_c09420 0.64 -2.8
961,715 + PGA1_c09420 0.64 -1.0
961,716 + PGA1_c09420 0.64 -1.8
961,728 - PGA1_c09420 0.65 -2.2
961,733 - PGA1_c09420 0.65 -2.1
961,741 - PGA1_c09420 0.65 -2.7
961,753 - PGA1_c09420 0.65 -2.6
961,773 + PGA1_c09420 0.66 -2.4
961,810 + PGA1_c09420 0.67 -2.1
961,818 - PGA1_c09420 0.67 -3.6
961,829 + PGA1_c09420 0.67 -1.8
961,829 + PGA1_c09420 0.67 -3.2
961,837 - PGA1_c09420 0.68 -3.7
961,837 - PGA1_c09420 0.68 -2.0
961,837 - PGA1_c09420 0.68 -0.8
961,845 + PGA1_c09420 0.68 -3.1
961,845 + PGA1_c09420 0.68 -1.2
961,853 - PGA1_c09420 0.68 -2.4
961,878 + PGA1_c09420 0.69 -2.0
962,115 + PGA1_c09420 0.75 -2.8
962,115 - PGA1_c09420 0.75 -3.2
962,127 - PGA1_c09420 0.76 -3.0
962,144 - PGA1_c09420 0.76 -3.7
962,167 - PGA1_c09420 0.77 -2.9
962,167 - PGA1_c09420 0.77 -3.9
962,172 - PGA1_c09420 0.77 -2.1
962,174 - PGA1_c09420 0.77 -4.0
962,182 - PGA1_c09420 0.77 -2.1
962,267 + PGA1_c09420 0.80 -1.8
962,267 + PGA1_c09420 0.80 -2.9
962,367 + PGA1_c09420 0.82 -2.2
962,444 + PGA1_c09420 0.85 -1.1
962,540 - PGA1_c09420 0.87 -2.1
962,616 - PGA1_c09420 0.89 -3.6
962,616 - PGA1_c09420 0.89 -1.7
962,616 - PGA1_c09420 0.89 -2.2
962,629 + PGA1_c09420 0.90 -2.0
962,693 + -1.1
962,743 + -1.8
962,743 + -2.6
962,780 + -2.3
962,872 + -3.5
962,945 - -1.3
962,956 + -0.9
963,057 + -0.9
963,074 - -1.1
963,202 + PGA1_c09430 0.17 -1.6
963,202 + PGA1_c09430 0.17 -1.2
963,202 + PGA1_c09430 0.17 -1.6
963,202 + PGA1_c09430 0.17 -1.4
963,210 - PGA1_c09430 0.18 -2.2
963,223 + PGA1_c09430 0.19 -1.0
963,326 - PGA1_c09430 0.28 -1.0
963,341 - PGA1_c09430 0.29 -2.6
963,381 - PGA1_c09430 0.32 -2.0
963,416 + PGA1_c09430 0.35 -2.1
963,458 + PGA1_c09430 0.39 -2.7
963,477 - PGA1_c09430 0.40 -1.3
963,481 + PGA1_c09430 0.40 -1.7
963,486 - PGA1_c09430 0.41 -1.2
963,527 + PGA1_c09430 0.44 -1.8
963,527 + PGA1_c09430 0.44 -0.5
963,527 + PGA1_c09430 0.44 -2.2
963,535 - PGA1_c09430 0.45 -1.9
963,569 - PGA1_c09430 0.48 +0.1
963,585 - PGA1_c09430 0.49 -2.5
963,595 + PGA1_c09430 0.50 -1.5
963,605 + PGA1_c09430 0.51 -2.2
963,608 - PGA1_c09430 0.51 -0.3
963,674 + PGA1_c09430 0.56 -3.2
963,706 + PGA1_c09430 0.59 -1.8
963,714 - PGA1_c09430 0.60 +0.0
963,872 + PGA1_c09430 0.73 -1.9
963,875 - PGA1_c09430 0.73 -1.1
963,886 + PGA1_c09430 0.74 -2.5
963,894 - PGA1_c09430 0.75 -2.6
963,915 - PGA1_c09430 0.76 -3.1
963,963 - PGA1_c09430 0.80 -3.2

Or see this region's nucleotide sequence