Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08240 and PGA1_c08250 overlap by 8 nucleotides PGA1_c08250 and PGA1_c08260 are separated by 93 nucleotides PGA1_c08260 and PGA1_c08270 are separated by 3 nucleotides
PGA1_c08240: PGA1_c08240 - aerobic glycerol-3-phosphate dehydrogenase GlpD, at 852,461 to 854,050
_c08240
PGA1_c08250: PGA1_c08250 - putative glycerol-3-phosphate regulon repressor glpR, at 854,043 to 854,828
_c08250
PGA1_c08260: PGA1_c08260 - Uncharacterized protein conserved in bacteria, at 854,922 to 856,016
_c08260
PGA1_c08270: PGA1_c08270 - Predicted periplasmic lipoprotein, at 856,020 to 857,144
_c08270
Position (kb) 854
855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 854.222 kb on - strand, within PGA1_c08250 at 854.222 kb on - strand, within PGA1_c08250 at 854.309 kb on - strand, within PGA1_c08250 at 854.514 kb on - strand, within PGA1_c08250 at 854.561 kb on - strand, within PGA1_c08250 at 854.746 kb on - strand, within PGA1_c08250 at 854.845 kb on + strand at 854.971 kb on + strand at 854.975 kb on - strand at 854.975 kb on - strand at 855.255 kb on - strand, within PGA1_c08260 at 855.404 kb on + strand, within PGA1_c08260 at 855.411 kb on - strand, within PGA1_c08260 at 855.411 kb on - strand, within PGA1_c08260 at 855.436 kb on - strand, within PGA1_c08260 at 855.449 kb on - strand, within PGA1_c08260 at 855.512 kb on + strand, within PGA1_c08260 at 855.517 kb on + strand, within PGA1_c08260 at 855.520 kb on - strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.653 kb on + strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.661 kb on - strand, within PGA1_c08260 at 855.708 kb on - strand, within PGA1_c08260 at 855.708 kb on - strand, within PGA1_c08260 at 855.720 kb on + strand, within PGA1_c08260 at 855.728 kb on - strand, within PGA1_c08260 at 855.728 kb on - strand, within PGA1_c08260 at 855.870 kb on + strand, within PGA1_c08260 at 855.870 kb on + strand, within PGA1_c08260 at 855.870 kb on + strand, within PGA1_c08260 at 855.967 kb on - strand at 856.037 kb on + strand at 856.105 kb on - strand at 856.105 kb on - strand at 856.222 kb on + strand, within PGA1_c08270 at 856.222 kb on + strand, within PGA1_c08270 at 856.253 kb on + strand, within PGA1_c08270 at 856.261 kb on - strand, within PGA1_c08270 at 856.335 kb on + strand, within PGA1_c08270 at 856.348 kb on + strand, within PGA1_c08270 at 856.358 kb on + strand, within PGA1_c08270 at 856.358 kb on + strand, within PGA1_c08270 at 856.366 kb on - strand, within PGA1_c08270 at 856.394 kb on + strand, within PGA1_c08270 at 856.466 kb on + strand, within PGA1_c08270 at 856.466 kb on + strand, within PGA1_c08270 at 856.466 kb on + strand, within PGA1_c08270 at 856.466 kb on + strand, within PGA1_c08270 at 856.474 kb on - strand, within PGA1_c08270 at 856.474 kb on - strand, within PGA1_c08270 at 856.476 kb on + strand, within PGA1_c08270 at 856.479 kb on - strand, within PGA1_c08270 at 856.508 kb on - strand, within PGA1_c08270 at 856.569 kb on + strand, within PGA1_c08270 at 856.569 kb on + strand, within PGA1_c08270 at 856.569 kb on + strand, within PGA1_c08270 at 856.577 kb on - strand, within PGA1_c08270 at 856.823 kb on + strand, within PGA1_c08270 at 856.892 kb on + strand, within PGA1_c08270 at 856.898 kb on + strand, within PGA1_c08270 at 856.911 kb on - strand, within PGA1_c08270 at 856.911 kb on - strand, within PGA1_c08270 at 856.911 kb on - strand, within PGA1_c08270 at 856.913 kb on + strand, within PGA1_c08270 at 856.921 kb on - strand, within PGA1_c08270 at 856.983 kb on + strand, within PGA1_c08270 at 856.983 kb on + strand, within PGA1_c08270 at 856.991 kb on - strand, within PGA1_c08270
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 854,222 - PGA1_c08250 0.23 -0.4 854,222 - PGA1_c08250 0.23 +0.6 854,309 - PGA1_c08250 0.34 +0.1 854,514 - PGA1_c08250 0.60 +0.1 854,561 - PGA1_c08250 0.66 +0.9 854,746 - PGA1_c08250 0.89 +0.9 854,845 + +1.2 854,971 + -0.5 854,975 - -0.7 854,975 - +1.8 855,255 - PGA1_c08260 0.30 -0.7 855,404 + PGA1_c08260 0.44 -1.6 855,411 - PGA1_c08260 0.45 +1.4 855,411 - PGA1_c08260 0.45 +0.4 855,436 - PGA1_c08260 0.47 -0.2 855,449 - PGA1_c08260 0.48 -0.9 855,512 + PGA1_c08260 0.54 +1.5 855,517 + PGA1_c08260 0.54 +0.6 855,520 - PGA1_c08260 0.55 +0.5 855,653 + PGA1_c08260 0.67 +0.7 855,653 + PGA1_c08260 0.67 -0.8 855,653 + PGA1_c08260 0.67 +0.1 855,653 + PGA1_c08260 0.67 +0.1 855,653 + PGA1_c08260 0.67 -0.2 855,653 + PGA1_c08260 0.67 +0.1 855,653 + PGA1_c08260 0.67 -0.8 855,653 + PGA1_c08260 0.67 +0.6 855,653 + PGA1_c08260 0.67 +0.5 855,661 - PGA1_c08260 0.67 -0.0 855,661 - PGA1_c08260 0.67 +0.8 855,661 - PGA1_c08260 0.67 -1.4 855,661 - PGA1_c08260 0.67 -0.3 855,661 - PGA1_c08260 0.67 +0.7 855,661 - PGA1_c08260 0.67 -1.1 855,708 - PGA1_c08260 0.72 -0.8 855,708 - PGA1_c08260 0.72 -0.3 855,720 + PGA1_c08260 0.73 -0.3 855,728 - PGA1_c08260 0.74 -1.0 855,728 - PGA1_c08260 0.74 +0.6 855,870 + PGA1_c08260 0.87 -0.5 855,870 + PGA1_c08260 0.87 -1.5 855,870 + PGA1_c08260 0.87 -0.3 855,967 - -0.5 856,037 + +1.0 856,105 - +0.1 856,105 - -0.1 856,222 + PGA1_c08270 0.18 -0.4 856,222 + PGA1_c08270 0.18 +0.2 856,253 + PGA1_c08270 0.21 +0.5 856,261 - PGA1_c08270 0.21 +0.2 856,335 + PGA1_c08270 0.28 -0.0 856,348 + PGA1_c08270 0.29 +0.3 856,358 + PGA1_c08270 0.30 -0.0 856,358 + PGA1_c08270 0.30 +0.7 856,366 - PGA1_c08270 0.31 +1.0 856,394 + PGA1_c08270 0.33 -1.5 856,466 + PGA1_c08270 0.40 -0.1 856,466 + PGA1_c08270 0.40 +0.7 856,466 + PGA1_c08270 0.40 -1.8 856,466 + PGA1_c08270 0.40 -0.7 856,474 - PGA1_c08270 0.40 -0.3 856,474 - PGA1_c08270 0.40 +0.0 856,476 + PGA1_c08270 0.41 -1.0 856,479 - PGA1_c08270 0.41 +0.4 856,508 - PGA1_c08270 0.43 +0.9 856,569 + PGA1_c08270 0.49 -0.7 856,569 + PGA1_c08270 0.49 +0.0 856,569 + PGA1_c08270 0.49 +0.7 856,577 - PGA1_c08270 0.50 -0.1 856,823 + PGA1_c08270 0.71 +1.0 856,892 + PGA1_c08270 0.78 +0.1 856,898 + PGA1_c08270 0.78 +0.1 856,911 - PGA1_c08270 0.79 -0.3 856,911 - PGA1_c08270 0.79 -0.2 856,911 - PGA1_c08270 0.79 -0.3 856,913 + PGA1_c08270 0.79 -0.7 856,921 - PGA1_c08270 0.80 +0.4 856,983 + PGA1_c08270 0.86 -1.1 856,983 + PGA1_c08270 0.86 -1.5 856,991 - PGA1_c08270 0.86 -0.9
Or see this region's nucleotide sequence