Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30160

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,152,539	+		PGA1_c30150	0.47	+0.2
3,152,544	+		PGA1_c30150	0.47	+0.3
3,152,547	-		PGA1_c30150	0.47	-1.8
3,152,580	-		PGA1_c30150	0.50	-2.4
3,152,580	-		PGA1_c30150	0.50	-2.3
3,152,599	-		PGA1_c30150	0.51	-0.6
3,152,671	+		PGA1_c30150	0.55	+0.3
3,152,681	+		PGA1_c30150	0.56	-1.9
3,152,689	-		PGA1_c30150	0.56	-1.8
3,152,689	-		PGA1_c30150	0.56	-0.3
3,152,718	+		PGA1_c30150	0.58	-0.8
3,152,723	+		PGA1_c30150	0.58	-0.4
3,152,731	-		PGA1_c30150	0.59	-1.1
3,152,739	+		PGA1_c30150	0.59	+0.1
3,152,753	-		PGA1_c30150	0.60	-1.9
3,152,753	-		PGA1_c30150	0.60	-1.9
3,152,753	-		PGA1_c30150	0.60	-1.1
3,152,826	-		PGA1_c30150	0.65	-0.9
3,152,856	+		PGA1_c30150	0.67	-2.1
3,152,870	-		PGA1_c30150	0.68	-1.4
3,152,896	+		PGA1_c30150	0.69	-0.5
3,152,903	-		PGA1_c30150	0.70	-2.5
3,153,013	+		PGA1_c30150	0.76	-1.5
3,153,053	+		PGA1_c30150	0.79	-1.7
3,153,053	+		PGA1_c30150	0.79	+1.0
3,153,053	+		PGA1_c30150	0.79	-0.9
3,153,061	-		PGA1_c30150	0.79	+0.3
3,153,061	-		PGA1_c30150	0.79	-0.9
3,153,140	+		PGA1_c30150	0.84	-1.1
3,153,145	+		PGA1_c30150	0.85	-2.3
3,153,149	+		PGA1_c30150	0.85	-0.8
3,153,237	+				-1.5
3,153,248	+				-2.1
3,153,304	+				-1.5
3,153,335	+				+0.1
3,153,343	-				-1.5
3,153,394	+				+0.1
3,153,395	-				-1.5
3,153,395	-				-0.9
3,153,399	+				-0.3
3,153,410	-				-1.0
3,153,461	-				+1.1
3,153,469	+				-0.9
3,153,469	+				-1.5
3,153,469	+				-0.1
3,153,472	-				+0.3
3,153,472	-				-0.8
3,153,477	-				-0.7
3,153,477	-				+0.3
3,153,477	-				-0.4
3,153,522	+				-0.4
3,153,529	+				+0.1
3,153,579	+				-0.7
3,153,579	+				-2.9
3,153,687	+		PGA1_c30160	0.19	-2.4
3,153,740	+		PGA1_c30160	0.23	-1.3
3,153,784	+		PGA1_c30160	0.27	-1.5
3,153,835	-		PGA1_c30160	0.32	-2.1
3,153,843	+		PGA1_c30160	0.33	-2.0
3,153,848	+		PGA1_c30160	0.33	-1.8
3,153,851	-		PGA1_c30160	0.33	-2.1
3,153,853	+		PGA1_c30160	0.34	-2.8
3,153,853	+		PGA1_c30160	0.34	-0.3
3,153,853	+		PGA1_c30160	0.34	-1.8
3,153,853	+		PGA1_c30160	0.34	-0.2
3,153,853	+		PGA1_c30160	0.34	-1.5
3,153,853	+		PGA1_c30160	0.34	-2.7
3,153,853	+		PGA1_c30160	0.34	-0.6
3,153,853	+		PGA1_c30160	0.34	-0.9
3,153,853	+		PGA1_c30160	0.34	-1.3
3,153,853	+		PGA1_c30160	0.34	-1.5
3,153,853	+		PGA1_c30160	0.34	-2.8
3,153,861	-		PGA1_c30160	0.34	-1.1
3,153,861	-		PGA1_c30160	0.34	-1.5
3,153,861	-		PGA1_c30160	0.34	-0.8
3,153,861	-		PGA1_c30160	0.34	-0.6
3,153,861	-		PGA1_c30160	0.34	-1.1
3,153,861	-		PGA1_c30160	0.34	-3.0
3,153,861	-		PGA1_c30160	0.34	-1.5
3,153,861	-		PGA1_c30160	0.34	-2.9
3,153,861	-		PGA1_c30160	0.34	-2.3
3,153,861	-		PGA1_c30160	0.34	-1.7
3,153,861	-		PGA1_c30160	0.34	-1.5
3,153,861	-		PGA1_c30160	0.34	-0.1
3,153,861	-		PGA1_c30160	0.34	-1.4
3,153,871	-		PGA1_c30160	0.35	+0.1
3,153,938	+		PGA1_c30160	0.41	-0.9
3,153,938	+		PGA1_c30160	0.41	-0.8
3,153,946	-		PGA1_c30160	0.42	-1.0
3,153,951	-		PGA1_c30160	0.42	-2.2
3,153,956	-		PGA1_c30160	0.43	-2.1
3,154,012	+		PGA1_c30160	0.48	-0.1
3,154,012	+		PGA1_c30160	0.48	-1.2
3,154,012	+		PGA1_c30160	0.48	-0.9
3,154,012	+		PGA1_c30160	0.48	-3.5
3,154,012	+		PGA1_c30160	0.48	-1.5
3,154,012	+		PGA1_c30160	0.48	-2.0
3,154,012	+		PGA1_c30160	0.48	-2.3
3,154,012	+		PGA1_c30160	0.48	-2.5
3,154,012	+		PGA1_c30160	0.48	-1.7
3,154,012	+		PGA1_c30160	0.48	-2.5
3,154,012	+		PGA1_c30160	0.48	-2.3
3,154,020	-		PGA1_c30160	0.49	-1.3
3,154,020	-		PGA1_c30160	0.49	-0.5
3,154,020	-		PGA1_c30160	0.49	-0.8
3,154,020	-		PGA1_c30160	0.49	+0.3
3,154,020	-		PGA1_c30160	0.49	-2.7
3,154,020	-		PGA1_c30160	0.49	-0.6
3,154,020	-		PGA1_c30160	0.49	-0.5
3,154,020	-		PGA1_c30160	0.49	-0.4
3,154,020	-		PGA1_c30160	0.49	-2.5
3,154,020	-		PGA1_c30160	0.49	-1.6
3,154,020	-		PGA1_c30160	0.49	-2.5
3,154,020	-		PGA1_c30160	0.49	-0.7
3,154,042	-		PGA1_c30160	0.51	+0.1
3,154,053	-		PGA1_c30160	0.52	-1.8
3,154,062	+		PGA1_c30160	0.52	-2.4
3,154,062	+		PGA1_c30160	0.52	-0.3
3,154,062	+		PGA1_c30160	0.52	-1.2
3,154,070	-		PGA1_c30160	0.53	-2.5
3,154,106	+		PGA1_c30160	0.56	-0.8
3,154,108	+		PGA1_c30160	0.57	-0.7
3,154,108	+		PGA1_c30160	0.57	-0.9
3,154,116	-		PGA1_c30160	0.57	-1.8
3,154,116	-		PGA1_c30160	0.57	-0.8
3,154,116	-		PGA1_c30160	0.57	+0.8
3,154,134	-		PGA1_c30160	0.59	+0.5
3,154,139	-		PGA1_c30160	0.59	-1.3
3,154,155	-		PGA1_c30160	0.61	-1.2
3,154,190	+		PGA1_c30160	0.64	-0.9
3,154,234	+		PGA1_c30160	0.68	-1.5
3,154,242	-		PGA1_c30160	0.69	-2.0
3,154,246	+		PGA1_c30160	0.69	-2.0
3,154,299	+		PGA1_c30160	0.74	-1.7
3,154,299	+		PGA1_c30160	0.74	-2.5
3,154,307	-		PGA1_c30160	0.75	-1.4
3,154,307	-		PGA1_c30160	0.75	-1.1
3,154,307	-		PGA1_c30160	0.75	+0.4
3,154,307	-		PGA1_c30160	0.75	-0.3
3,154,307	-		PGA1_c30160	0.75	+0.5
3,154,307	-		PGA1_c30160	0.75	-1.1
3,154,307	-		PGA1_c30160	0.75	-2.4
3,154,309	+		PGA1_c30160	0.75	-1.3
3,154,309	+		PGA1_c30160	0.75	-1.7
3,154,309	+		PGA1_c30160	0.75	-1.5
3,154,309	+		PGA1_c30160	0.75	-2.6
3,154,309	+		PGA1_c30160	0.75	-2.6
3,154,309	+		PGA1_c30160	0.75	-2.6
3,154,309	+		PGA1_c30160	0.75	-1.2
3,154,311	+		PGA1_c30160	0.75	+0.2
3,154,311	+		PGA1_c30160	0.75	-1.6
3,154,317	-		PGA1_c30160	0.76	-0.4
3,154,317	-		PGA1_c30160	0.76	-1.3
3,154,317	-		PGA1_c30160	0.76	-1.4
3,154,317	-		PGA1_c30160	0.76	-1.8
3,154,317	-		PGA1_c30160	0.76	-2.5
3,154,317	-		PGA1_c30160	0.76	+0.1
3,154,317	-		PGA1_c30160	0.76	-3.5
3,154,317	-		PGA1_c30160	0.76	-0.9
3,154,319	-		PGA1_c30160	0.76	-1.6
3,154,319	-		PGA1_c30160	0.76	-0.7
3,154,319	-		PGA1_c30160	0.76	-0.5
3,154,319	-		PGA1_c30160	0.76	-2.1
3,154,319	-		PGA1_c30160	0.76	-1.2
3,154,345	-		PGA1_c30160	0.78	-1.7
3,154,345	-		PGA1_c30160	0.78	-1.9
3,154,355	+		PGA1_c30160	0.79	+0.1
3,154,363	-		PGA1_c30160	0.80	-1.7
3,154,416	-		PGA1_c30160	0.84	-1.9
3,154,474	-		PGA1_c30160	0.90	-0.2
3,154,490	+				-0.9
3,154,490	+				-2.5
3,154,498	-				-0.2
3,154,498	-				-2.8
3,154,566	+				-2.9
3,154,566	+				-0.9
3,154,596	-				-1.7
3,154,603	-				-1.5
3,154,643	-				-1.9
3,154,652	-				-3.3
3,154,654	+				-1.4
3,154,662	+				-2.3
3,154,662	+				-1.0
3,154,667	+				-0.7
3,154,667	+				-1.4
3,154,667	+				-0.9
3,154,667	+				-0.2
3,154,667	+				+0.1
3,154,669	+				-1.0
3,154,670	-				-1.1
3,154,670	-				-0.9
3,154,675	-				-2.1
3,154,675	-				-1.5
3,154,675	-				-1.9
3,154,675	-				-0.7
3,154,675	-				-0.8
3,154,675	-				-1.6
3,154,675	-				-1.3
3,154,675	-				-2.3
3,154,675	-				-2.4
3,154,675	-				-2.8
3,154,677	-				-2.6
3,154,710	-		PGA1_c30170	0.11	-1.7
3,154,724	+		PGA1_c30170	0.12	+0.3
3,154,730	+		PGA1_c30170	0.13	-0.9
3,154,733	-		PGA1_c30170	0.13	-2.7
3,154,738	+		PGA1_c30170	0.14	-1.5
3,154,746	-		PGA1_c30170	0.14	-1.6
3,154,746	-		PGA1_c30170	0.14	-0.8
3,154,747	+		PGA1_c30170	0.14	-1.4
3,154,747	+		PGA1_c30170	0.14	-0.8
3,154,747	+		PGA1_c30170	0.14	-0.4
3,154,747	+		PGA1_c30170	0.14	-3.0
3,154,747	+		PGA1_c30170	0.14	-2.0
3,154,747	+		PGA1_c30170	0.14	-1.5
3,154,747	+		PGA1_c30170	0.14	-0.2
3,154,747	+		PGA1_c30170	0.14	-0.2
3,154,747	+		PGA1_c30170	0.14	+0.4
3,154,747	+		PGA1_c30170	0.14	-1.5
3,154,747	+		PGA1_c30170	0.14	-2.7
3,154,747	+		PGA1_c30170	0.14	-2.1
3,154,747	+		PGA1_c30170	0.14	-2.1
3,154,747	+		PGA1_c30170	0.14	-3.5
3,154,747	+		PGA1_c30170	0.14	-1.5
3,154,747	+		PGA1_c30170	0.14	-1.6
3,154,747	+		PGA1_c30170	0.14	-1.9
3,154,747	+		PGA1_c30170	0.14	-3.2
3,154,747	+		PGA1_c30170	0.14	-0.8
3,154,747	+		PGA1_c30170	0.14	+0.5
3,154,747	+		PGA1_c30170	0.14	-1.1
3,154,747	+		PGA1_c30170	0.14	-0.8
3,154,747	+		PGA1_c30170	0.14	-2.9
3,154,747	+		PGA1_c30170	0.14	-3.2
3,154,747	+		PGA1_c30170	0.14	+1.1
3,154,747	+		PGA1_c30170	0.14	-2.3
3,154,755	-		PGA1_c30170	0.15	+0.2
3,154,755	-		PGA1_c30170	0.15	-1.2
3,154,755	-		PGA1_c30170	0.15	-1.2
3,154,755	-		PGA1_c30170	0.15	-0.4
3,154,755	-		PGA1_c30170	0.15	-1.4
3,154,755	-		PGA1_c30170	0.15	-1.8
3,154,755	-		PGA1_c30170	0.15	-2.5
3,154,755	-		PGA1_c30170	0.15	-2.2
3,154,755	-		PGA1_c30170	0.15	-0.7
3,154,755	-		PGA1_c30170	0.15	-3.2
3,154,755	-		PGA1_c30170	0.15	-0.4
3,154,755	-		PGA1_c30170	0.15	-2.3
3,154,755	-		PGA1_c30170	0.15	-1.4
3,154,755	-		PGA1_c30170	0.15	-1.0
3,154,755	-		PGA1_c30170	0.15	-1.3
3,154,755	-		PGA1_c30170	0.15	-0.9
3,154,755	-		PGA1_c30170	0.15	-2.1
3,154,755	-		PGA1_c30170	0.15	-0.2
3,154,755	-		PGA1_c30170	0.15	-2.2
3,154,755	-		PGA1_c30170	0.15	-1.5
3,154,755	-		PGA1_c30170	0.15	-0.4
3,154,755	-		PGA1_c30170	0.15	-1.5
3,154,755	-		PGA1_c30170	0.15	-1.2
3,154,755	-		PGA1_c30170	0.15	-1.7
3,154,755	-		PGA1_c30170	0.15	-1.2
3,154,755	-		PGA1_c30170	0.15	-1.5
3,154,768	-		PGA1_c30170	0.16	-0.9
3,154,795	+		PGA1_c30170	0.19	-2.5
3,154,807	+		PGA1_c30170	0.20	-1.4
3,154,819	+		PGA1_c30170	0.21	-1.5
3,154,834	+		PGA1_c30170	0.22	-1.5
3,154,848	-		PGA1_c30170	0.24	-0.4
3,154,858	+		PGA1_c30170	0.25	-0.3
3,154,865	-		PGA1_c30170	0.25	-1.6
3,154,875	+		PGA1_c30170	0.26	-2.2
3,154,875	-		PGA1_c30170	0.26	-0.8
3,154,875	-		PGA1_c30170	0.26	-3.6
3,154,883	-		PGA1_c30170	0.27	-2.1
3,154,888	+		PGA1_c30170	0.27	-1.5
3,154,900	-		PGA1_c30170	0.28	-2.9
3,154,900	-		PGA1_c30170	0.28	-0.5
3,154,905	-		PGA1_c30170	0.29	-1.4
3,154,914	+		PGA1_c30170	0.30	-1.4
3,154,915	-		PGA1_c30170	0.30	-1.7
3,154,959	-		PGA1_c30170	0.34	-0.2
3,154,965	+		PGA1_c30170	0.34	-2.3
3,154,973	-		PGA1_c30170	0.35	-1.2
3,154,993	-		PGA1_c30170	0.37	-1.1
3,154,998	-		PGA1_c30170	0.37	-1.2
3,155,007	-		PGA1_c30170	0.38	-1.5
3,155,021	-		PGA1_c30170	0.40	-2.6
3,155,043	+		PGA1_c30170	0.42	-0.5
3,155,051	-		PGA1_c30170	0.42	-1.4
3,155,051	-		PGA1_c30170	0.42	-1.1
3,155,051	-		PGA1_c30170	0.42	-2.4
3,155,052	-		PGA1_c30170	0.42	-0.5
3,155,061	+		PGA1_c30170	0.43	-1.9
3,155,068	+		PGA1_c30170	0.44	-2.3
3,155,068	+		PGA1_c30170	0.44	-0.6
3,155,068	+		PGA1_c30170	0.44	-2.1
3,155,069	-		PGA1_c30170	0.44	-1.2
3,155,069	-		PGA1_c30170	0.44	-2.1
3,155,076	-		PGA1_c30170	0.45	-0.7
3,155,159	-		PGA1_c30170	0.52	-1.3
3,155,164	-		PGA1_c30170	0.53	-3.7
3,155,178	-		PGA1_c30170	0.54	-2.3
3,155,217	-		PGA1_c30170	0.58	-0.4
3,155,232	+		PGA1_c30170	0.59	-2.1
3,155,234	-		PGA1_c30170	0.59	-2.3
3,155,271	+		PGA1_c30170	0.63	-2.4
3,155,273	-		PGA1_c30170	0.63	-0.9
3,155,357	-		PGA1_c30170	0.71	-1.9
3,155,358	-		PGA1_c30170	0.71	-1.9
3,155,378	+		PGA1_c30170	0.72	-1.5
3,155,411	+		PGA1_c30170	0.76	-1.9
3,155,411	+		PGA1_c30170	0.76	-1.5
3,155,419	-		PGA1_c30170	0.76	-1.4
3,155,422	+		PGA1_c30170	0.77	-1.6
3,155,454	-		PGA1_c30170	0.79	-0.9
3,155,473	-		PGA1_c30170	0.81	-2.2
3,155,491	+		PGA1_c30170	0.83	-1.2
3,155,518	+		PGA1_c30170	0.85	-0.9
3,155,525	+		PGA1_c30170	0.86	-1.5
3,155,545	+		PGA1_c30170	0.88	+0.6
3,155,546	+		PGA1_c30170	0.88	-0.7
3,155,546	+		PGA1_c30170	0.88	-2.2
3,155,554	-		PGA1_c30170	0.89	-1.8
3,155,571	+				-0.3
3,155,584	-				-1.6