Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02382 and CCNA_02383 overlap by 4 nucleotides CCNA_02383 and CCNA_02384 are separated by 82 nucleotides CCNA_02384 and CCNA_02385 are separated by 195 nucleotides
CCNA_02382: CCNA_02382 - membrane peptidase, M23 family, at 2,524,178 to 2,525,074
_02382
CCNA_02383: CCNA_02383 - alpha/beta hydrolase family protein, at 2,525,071 to 2,525,940
_02383
CCNA_02384: CCNA_02384 - very-long-chain acyl-CoA synthetase, at 2,526,023 to 2,527,813
_02384
CCNA_02385: CCNA_02385 - 3-deoxy-7-phosphoheptulonate synthase, at 2,528,009 to 2,529,388
_02385
Position (kb)
2526
2527
2528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.027 kb on - strand at 2525.029 kb on + strand at 2525.037 kb on - strand at 2525.042 kb on - strand at 2525.069 kb on + strand at 2525.070 kb on - strand at 2525.070 kb on - strand at 2525.075 kb on + strand at 2525.084 kb on + strand at 2525.127 kb on + strand at 2525.146 kb on + strand at 2525.146 kb on + strand at 2525.149 kb on - strand at 2525.154 kb on - strand at 2525.175 kb on - strand, within CCNA_02383 at 2525.182 kb on + strand, within CCNA_02383 at 2525.185 kb on - strand, within CCNA_02383 at 2525.243 kb on + strand, within CCNA_02383 at 2525.260 kb on - strand, within CCNA_02383 at 2525.271 kb on - strand, within CCNA_02383 at 2525.353 kb on + strand, within CCNA_02383 at 2525.361 kb on + strand, within CCNA_02383 at 2525.409 kb on - strand, within CCNA_02383 at 2525.483 kb on - strand, within CCNA_02383 at 2525.486 kb on + strand, within CCNA_02383 at 2525.536 kb on + strand, within CCNA_02383 at 2525.541 kb on + strand, within CCNA_02383 at 2525.544 kb on - strand, within CCNA_02383 at 2525.544 kb on - strand, within CCNA_02383 at 2525.544 kb on - strand, within CCNA_02383 at 2525.544 kb on - strand, within CCNA_02383 at 2525.554 kb on + strand, within CCNA_02383 at 2525.554 kb on + strand, within CCNA_02383 at 2525.569 kb on - strand, within CCNA_02383 at 2525.569 kb on - strand, within CCNA_02383 at 2525.569 kb on - strand, within CCNA_02383 at 2525.569 kb on - strand, within CCNA_02383 at 2525.574 kb on - strand, within CCNA_02383 at 2525.615 kb on + strand, within CCNA_02383 at 2525.618 kb on - strand, within CCNA_02383 at 2525.623 kb on - strand, within CCNA_02383 at 2525.675 kb on + strand, within CCNA_02383 at 2525.688 kb on - strand, within CCNA_02383 at 2525.770 kb on + strand, within CCNA_02383 at 2525.778 kb on - strand, within CCNA_02383 at 2525.818 kb on - strand, within CCNA_02383 at 2525.843 kb on - strand, within CCNA_02383 at 2525.919 kb on + strand at 2525.924 kb on + strand at 2525.924 kb on + strand at 2525.924 kb on + strand at 2525.925 kb on + strand at 2525.932 kb on - strand at 2525.942 kb on - strand at 2525.959 kb on + strand at 2525.959 kb on - strand at 2525.975 kb on + strand at 2526.006 kb on + strand at 2526.027 kb on + strand at 2526.083 kb on + strand at 2526.091 kb on - strand at 2526.122 kb on - strand at 2526.128 kb on - strand at 2526.130 kb on + strand at 2526.130 kb on + strand at 2526.138 kb on - strand at 2526.154 kb on - strand at 2526.164 kb on - strand at 2526.194 kb on - strand at 2526.228 kb on - strand, within CCNA_02384 at 2526.267 kb on + strand, within CCNA_02384 at 2526.270 kb on - strand, within CCNA_02384 at 2526.270 kb on - strand, within CCNA_02384 at 2526.270 kb on - strand, within CCNA_02384 at 2526.336 kb on - strand, within CCNA_02384 at 2526.377 kb on + strand, within CCNA_02384 at 2526.433 kb on - strand, within CCNA_02384 at 2526.479 kb on - strand, within CCNA_02384 at 2526.479 kb on - strand, within CCNA_02384 at 2526.479 kb on - strand, within CCNA_02384 at 2526.524 kb on + strand, within CCNA_02384 at 2526.532 kb on - strand, within CCNA_02384 at 2526.539 kb on - strand, within CCNA_02384 at 2526.608 kb on - strand, within CCNA_02384 at 2526.800 kb on - strand, within CCNA_02384 at 2526.800 kb on - strand, within CCNA_02384 at 2526.824 kb on - strand, within CCNA_02384 at 2526.835 kb on - strand, within CCNA_02384 at 2526.840 kb on + strand, within CCNA_02384 at 2526.866 kb on + strand, within CCNA_02384 at 2526.880 kb on - strand, within CCNA_02384 at 2526.883 kb on + strand, within CCNA_02384 at 2526.906 kb on + strand, within CCNA_02384 at 2526.984 kb on + strand, within CCNA_02384 at 2526.984 kb on + strand, within CCNA_02384 at 2526.992 kb on - strand, within CCNA_02384 at 2527.007 kb on - strand, within CCNA_02384 at 2527.032 kb on + strand, within CCNA_02384 at 2527.032 kb on + strand, within CCNA_02384 at 2527.037 kb on + strand, within CCNA_02384 at 2527.040 kb on - strand, within CCNA_02384 at 2527.040 kb on - strand, within CCNA_02384 at 2527.040 kb on - strand, within CCNA_02384 at 2527.040 kb on - strand, within CCNA_02384 at 2527.040 kb on - strand, within CCNA_02384 at 2527.064 kb on - strand, within CCNA_02384 at 2527.064 kb on - strand, within CCNA_02384 at 2527.071 kb on - strand, within CCNA_02384 at 2527.098 kb on - strand, within CCNA_02384 at 2527.098 kb on - strand, within CCNA_02384 at 2527.122 kb on - strand, within CCNA_02384 at 2527.171 kb on - strand, within CCNA_02384 at 2527.182 kb on + strand at 2527.182 kb on + strand, within CCNA_02384 at 2527.182 kb on + strand, within CCNA_02384 at 2527.190 kb on - strand, within CCNA_02384 at 2527.190 kb on - strand, within CCNA_02384 at 2527.217 kb on - strand, within CCNA_02384 at 2527.296 kb on + strand, within CCNA_02384 at 2527.318 kb on - strand, within CCNA_02384 at 2527.319 kb on + strand, within CCNA_02384 at 2527.327 kb on - strand, within CCNA_02384 at 2527.378 kb on - strand, within CCNA_02384 at 2527.386 kb on - strand, within CCNA_02384 at 2527.386 kb on - strand, within CCNA_02384 at 2527.386 kb on - strand, within CCNA_02384 at 2527.491 kb on + strand, within CCNA_02384 at 2527.542 kb on + strand, within CCNA_02384 at 2527.542 kb on + strand, within CCNA_02384 at 2527.560 kb on + strand, within CCNA_02384 at 2527.571 kb on + strand, within CCNA_02384 at 2527.576 kb on + strand, within CCNA_02384 at 2527.577 kb on + strand, within CCNA_02384 at 2527.586 kb on - strand, within CCNA_02384 at 2527.593 kb on - strand, within CCNA_02384 at 2527.599 kb on + strand, within CCNA_02384 at 2527.605 kb on - strand, within CCNA_02384 at 2527.619 kb on + strand, within CCNA_02384 at 2527.669 kb on - strand at 2527.680 kb on - strand at 2527.722 kb on - strand at 2527.727 kb on - strand at 2527.835 kb on + strand at 2527.835 kb on + strand at 2527.835 kb on + strand at 2527.843 kb on - strand at 2527.843 kb on - strand at 2527.843 kb on - strand at 2527.858 kb on + strand at 2527.866 kb on - strand at 2527.907 kb on + strand at 2527.932 kb on + strand at 2527.941 kb on + strand at 2527.987 kb on - strand at 2527.992 kb on + strand at 2528.061 kb on - strand at 2528.116 kb on + strand at 2528.116 kb on + strand at 2528.144 kb on + strand at 2528.152 kb on - strand, within CCNA_02385 at 2528.152 kb on - strand, within CCNA_02385 at 2528.152 kb on - strand, within CCNA_02385 at 2528.152 kb on - strand, within CCNA_02385 at 2528.178 kb on + strand, within CCNA_02385 at 2528.182 kb on - strand, within CCNA_02385 at 2528.184 kb on - strand, within CCNA_02385 at 2528.196 kb on - strand, within CCNA_02385 at 2528.211 kb on + strand, within CCNA_02385 at 2528.218 kb on + strand, within CCNA_02385 at 2528.218 kb on + strand, within CCNA_02385 at 2528.234 kb on - strand, within CCNA_02385 at 2528.234 kb on - strand, within CCNA_02385 at 2528.234 kb on - strand, within CCNA_02385 at 2528.234 kb on - strand, within CCNA_02385 at 2528.245 kb on + strand, within CCNA_02385 at 2528.253 kb on - strand, within CCNA_02385 at 2528.253 kb on - strand, within CCNA_02385 at 2528.253 kb on - strand, within CCNA_02385 at 2528.308 kb on + strand, within CCNA_02385 at 2528.316 kb on + strand, within CCNA_02385 at 2528.324 kb on - strand, within CCNA_02385 at 2528.431 kb on + strand, within CCNA_02385 at 2528.431 kb on - strand, within CCNA_02385 at 2528.433 kb on - strand, within CCNA_02385 at 2528.439 kb on - strand, within CCNA_02385 at 2528.439 kb on - strand, within CCNA_02385 at 2528.453 kb on - strand, within CCNA_02385 at 2528.485 kb on - strand, within CCNA_02385 at 2528.521 kb on - strand, within CCNA_02385 at 2528.589 kb on + strand, within CCNA_02385 at 2528.592 kb on - strand, within CCNA_02385 at 2528.599 kb on + strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.672 kb on - strand, within CCNA_02385 at 2528.703 kb on - strand, within CCNA_02385 at 2528.710 kb on + strand, within CCNA_02385 at 2528.718 kb on - strand, within CCNA_02385 at 2528.753 kb on + strand, within CCNA_02385 at 2528.758 kb on + strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.763 kb on + strand, within CCNA_02385 at 2528.764 kb on + strand, within CCNA_02385 at 2528.774 kb on + strand, within CCNA_02385 at 2528.774 kb on + strand, within CCNA_02385
Per-strain Table
Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,525,027 - -0.2 2,525,027 - +0.3 2,525,027 - +0.3 2,525,027 - +0.8 2,525,027 - +1.8 2,525,027 - +0.5 2,525,027 - +0.4 2,525,029 + -0.5 2,525,037 - +0.1 2,525,042 - +0.6 2,525,069 + -0.4 2,525,070 - +0.6 2,525,070 - +1.1 2,525,075 + -1.2 2,525,084 + -0.2 2,525,127 + +0.7 2,525,146 + -0.7 2,525,146 + +0.4 2,525,149 - -0.5 2,525,154 - -0.3 2,525,175 - CCNA_02383 0.12 -0.3 2,525,182 + CCNA_02383 0.13 -0.4 2,525,185 - CCNA_02383 0.13 +0.7 2,525,243 + CCNA_02383 0.20 +0.1 2,525,260 - CCNA_02383 0.22 +0.1 2,525,271 - CCNA_02383 0.23 -0.6 2,525,353 + CCNA_02383 0.32 -1.1 2,525,361 + CCNA_02383 0.33 -1.1 2,525,409 - CCNA_02383 0.39 -1.4 2,525,483 - CCNA_02383 0.47 +1.1 2,525,486 + CCNA_02383 0.48 -0.7 2,525,536 + CCNA_02383 0.53 -2.5 2,525,541 + CCNA_02383 0.54 -0.7 2,525,544 - CCNA_02383 0.54 +0.2 2,525,544 - CCNA_02383 0.54 -0.0 2,525,544 - CCNA_02383 0.54 -1.1 2,525,544 - CCNA_02383 0.54 +1.0 2,525,554 + CCNA_02383 0.56 -0.7 2,525,554 + CCNA_02383 0.56 -0.2 2,525,569 - CCNA_02383 0.57 -0.1 2,525,569 - CCNA_02383 0.57 +0.2 2,525,569 - CCNA_02383 0.57 +0.0 2,525,569 - CCNA_02383 0.57 +0.2 2,525,574 - CCNA_02383 0.58 +1.3 2,525,615 + CCNA_02383 0.63 -0.4 2,525,618 - CCNA_02383 0.63 -0.1 2,525,623 - CCNA_02383 0.63 +0.3 2,525,675 + CCNA_02383 0.69 -0.1 2,525,688 - CCNA_02383 0.71 -0.1 2,525,770 + CCNA_02383 0.80 +0.5 2,525,778 - CCNA_02383 0.81 +0.3 2,525,818 - CCNA_02383 0.86 +0.0 2,525,843 - CCNA_02383 0.89 -0.4 2,525,919 + -1.8 2,525,924 + +1.1 2,525,924 + +0.8 2,525,924 + -1.4 2,525,925 + +0.6 2,525,932 - +0.5 2,525,942 - +0.0 2,525,959 + -1.4 2,525,959 - +0.6 2,525,975 + -0.5 2,526,006 + -0.1 2,526,027 + +0.5 2,526,083 + -0.7 2,526,091 - +0.4 2,526,122 - +0.4 2,526,128 - +0.4 2,526,130 + +0.4 2,526,130 + -0.2 2,526,138 - +0.4 2,526,154 - +0.5 2,526,164 - +0.7 2,526,194 - +0.3 2,526,228 - CCNA_02384 0.11 +0.4 2,526,267 + CCNA_02384 0.14 -2.2 2,526,270 - CCNA_02384 0.14 +1.1 2,526,270 - CCNA_02384 0.14 +0.5 2,526,270 - CCNA_02384 0.14 -0.1 2,526,336 - CCNA_02384 0.17 -0.0 2,526,377 + CCNA_02384 0.20 +0.5 2,526,433 - CCNA_02384 0.23 +0.5 2,526,479 - CCNA_02384 0.25 +0.3 2,526,479 - CCNA_02384 0.25 -0.3 2,526,479 - CCNA_02384 0.25 +0.6 2,526,524 + CCNA_02384 0.28 -1.9 2,526,532 - CCNA_02384 0.28 +0.6 2,526,539 - CCNA_02384 0.29 +0.4 2,526,608 - CCNA_02384 0.33 +0.4 2,526,800 - CCNA_02384 0.43 +0.2 2,526,800 - CCNA_02384 0.43 +0.9 2,526,824 - CCNA_02384 0.45 +0.8 2,526,835 - CCNA_02384 0.45 +0.2 2,526,840 + CCNA_02384 0.46 +0.9 2,526,866 + CCNA_02384 0.47 -1.1 2,526,880 - CCNA_02384 0.48 +0.6 2,526,883 + CCNA_02384 0.48 +1.5 2,526,906 + CCNA_02384 0.49 -1.0 2,526,984 + CCNA_02384 0.54 -2.2 2,526,984 + CCNA_02384 0.54 +0.4 2,526,992 - CCNA_02384 0.54 +0.5 2,527,007 - CCNA_02384 0.55 +0.3 2,527,032 + CCNA_02384 0.56 -0.7 2,527,032 + CCNA_02384 0.56 +0.2 2,527,037 + CCNA_02384 0.57 -0.6 2,527,040 - CCNA_02384 0.57 +0.1 2,527,040 - CCNA_02384 0.57 +0.4 2,527,040 - CCNA_02384 0.57 -0.3 2,527,040 - CCNA_02384 0.57 -0.1 2,527,040 - CCNA_02384 0.57 +0.2 2,527,064 - CCNA_02384 0.58 +0.2 2,527,064 - CCNA_02384 0.58 +0.7 2,527,071 - CCNA_02384 0.59 +0.5 2,527,098 - CCNA_02384 0.60 -0.7 2,527,098 - CCNA_02384 0.60 +1.5 2,527,122 - CCNA_02384 0.61 +0.7 2,527,171 - CCNA_02384 0.64 -0.2 2,527,182 + +1.1 2,527,182 + CCNA_02384 0.65 -0.2 2,527,182 + CCNA_02384 0.65 -1.1 2,527,190 - CCNA_02384 0.65 +0.7 2,527,190 - CCNA_02384 0.65 +0.6 2,527,217 - CCNA_02384 0.67 +0.2 2,527,296 + CCNA_02384 0.71 +0.4 2,527,318 - CCNA_02384 0.72 +1.0 2,527,319 + CCNA_02384 0.72 -1.6 2,527,327 - CCNA_02384 0.73 +0.0 2,527,378 - CCNA_02384 0.76 -0.3 2,527,386 - CCNA_02384 0.76 -0.8 2,527,386 - CCNA_02384 0.76 -0.7 2,527,386 - CCNA_02384 0.76 -1.7 2,527,491 + CCNA_02384 0.82 +0.0 2,527,542 + CCNA_02384 0.85 -0.6 2,527,542 + CCNA_02384 0.85 -2.2 2,527,560 + CCNA_02384 0.86 -1.4 2,527,571 + CCNA_02384 0.86 -0.2 2,527,576 + CCNA_02384 0.87 -1.3 2,527,577 + CCNA_02384 0.87 -1.2 2,527,586 - CCNA_02384 0.87 +0.4 2,527,593 - CCNA_02384 0.88 +1.6 2,527,599 + CCNA_02384 0.88 -0.4 2,527,605 - CCNA_02384 0.88 +1.5 2,527,619 + CCNA_02384 0.89 -1.1 2,527,669 - +0.5 2,527,680 - +0.5 2,527,722 - +0.1 2,527,727 - +0.0 2,527,835 + +0.2 2,527,835 + -0.7 2,527,835 + +0.0 2,527,843 - -0.7 2,527,843 - -0.2 2,527,843 - -0.0 2,527,858 + +0.5 2,527,866 - +0.5 2,527,907 + -0.1 2,527,932 + -0.1 2,527,941 + +0.4 2,527,987 - +1.0 2,527,992 + -0.8 2,528,061 - +2.5 2,528,116 + -0.7 2,528,116 + +0.3 2,528,144 + -0.2 2,528,152 - CCNA_02385 0.10 +0.9 2,528,152 - CCNA_02385 0.10 +0.6 2,528,152 - CCNA_02385 0.10 -0.4 2,528,152 - CCNA_02385 0.10 +1.5 2,528,178 + CCNA_02385 0.12 +0.5 2,528,182 - CCNA_02385 0.13 -0.1 2,528,184 - CCNA_02385 0.13 +0.3 2,528,196 - CCNA_02385 0.14 +0.9 2,528,211 + CCNA_02385 0.15 +0.8 2,528,218 + CCNA_02385 0.15 -0.4 2,528,218 + CCNA_02385 0.15 +0.2 2,528,234 - CCNA_02385 0.16 +0.0 2,528,234 - CCNA_02385 0.16 -0.1 2,528,234 - CCNA_02385 0.16 +0.5 2,528,234 - CCNA_02385 0.16 +0.5 2,528,245 + CCNA_02385 0.17 -0.1 2,528,253 - CCNA_02385 0.18 +1.6 2,528,253 - CCNA_02385 0.18 -0.7 2,528,253 - CCNA_02385 0.18 +0.6 2,528,308 + CCNA_02385 0.22 -1.9 2,528,316 + CCNA_02385 0.22 -1.0 2,528,324 - CCNA_02385 0.23 +0.4 2,528,431 + CCNA_02385 0.31 -0.7 2,528,431 - CCNA_02385 0.31 -0.4 2,528,433 - CCNA_02385 0.31 +0.4 2,528,439 - CCNA_02385 0.31 +0.6 2,528,439 - CCNA_02385 0.31 +0.6 2,528,453 - CCNA_02385 0.32 -0.2 2,528,485 - CCNA_02385 0.34 -0.2 2,528,521 - CCNA_02385 0.37 +0.6 2,528,589 + CCNA_02385 0.42 +0.6 2,528,592 - CCNA_02385 0.42 -0.3 2,528,599 + CCNA_02385 0.43 +2.5 2,528,653 - CCNA_02385 0.47 +0.4 2,528,653 - CCNA_02385 0.47 -0.3 2,528,653 - CCNA_02385 0.47 -1.5 2,528,653 - CCNA_02385 0.47 +0.6 2,528,672 - CCNA_02385 0.48 +0.3 2,528,703 - CCNA_02385 0.50 +1.2 2,528,710 + CCNA_02385 0.51 -0.9 2,528,718 - CCNA_02385 0.51 +0.1 2,528,753 + CCNA_02385 0.54 -0.9 2,528,758 + CCNA_02385 0.54 -2.3 2,528,761 - CCNA_02385 0.54 -0.0 2,528,761 - CCNA_02385 0.54 -0.1 2,528,761 - CCNA_02385 0.54 -0.3 2,528,761 - CCNA_02385 0.54 +0.1 2,528,763 + CCNA_02385 0.55 -2.9 2,528,764 + CCNA_02385 0.55 -0.3 2,528,774 + CCNA_02385 0.55 -1.6 2,528,774 + CCNA_02385 0.55 -1.5
Or see this region's nucleotide sequence