Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01446 and CCNA_01447 are separated by 36 nucleotides CCNA_01447 and CCNA_01448 are separated by 74 nucleotides
CCNA_01446: CCNA_01446 - LL-diaminopimelate aminotransferase, at 1,558,246 to 1,559,466
_01446
CCNA_01447: CCNA_01447 - homoserine dehydrogenase, at 1,559,503 to 1,560,792
_01447
CCNA_01448: CCNA_01448 - fructose-1,6-bisphosphatase, class II, at 1,560,867 to 1,561,820
_01448
Position (kb)
1559
1560
1561 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1558.573 kb on + strand, within CCNA_01446 at 1558.576 kb on - strand, within CCNA_01446 at 1558.584 kb on + strand, within CCNA_01446 at 1558.587 kb on - strand, within CCNA_01446 at 1558.588 kb on + strand, within CCNA_01446 at 1558.618 kb on - strand, within CCNA_01446 at 1558.620 kb on + strand, within CCNA_01446 at 1558.623 kb on - strand, within CCNA_01446 at 1558.694 kb on + strand, within CCNA_01446 at 1558.704 kb on + strand, within CCNA_01446 at 1558.723 kb on + strand, within CCNA_01446 at 1558.731 kb on - strand, within CCNA_01446 at 1558.731 kb on - strand, within CCNA_01446 at 1558.761 kb on + strand, within CCNA_01446 at 1558.763 kb on - strand, within CCNA_01446 at 1558.790 kb on + strand, within CCNA_01446 at 1558.795 kb on + strand, within CCNA_01446 at 1558.849 kb on - strand, within CCNA_01446 at 1558.922 kb on + strand, within CCNA_01446 at 1558.956 kb on + strand, within CCNA_01446 at 1558.956 kb on + strand, within CCNA_01446 at 1558.956 kb on + strand, within CCNA_01446 at 1558.956 kb on + strand, within CCNA_01446 at 1558.956 kb on + strand, within CCNA_01446 at 1558.965 kb on - strand, within CCNA_01446 at 1559.013 kb on + strand, within CCNA_01446 at 1559.016 kb on - strand, within CCNA_01446 at 1559.021 kb on - strand, within CCNA_01446 at 1559.021 kb on - strand, within CCNA_01446 at 1559.040 kb on + strand, within CCNA_01446 at 1559.048 kb on - strand, within CCNA_01446 at 1559.061 kb on + strand, within CCNA_01446 at 1559.092 kb on + strand, within CCNA_01446 at 1559.092 kb on + strand, within CCNA_01446 at 1559.100 kb on - strand, within CCNA_01446 at 1559.100 kb on - strand, within CCNA_01446 at 1559.100 kb on - strand, within CCNA_01446 at 1559.102 kb on + strand, within CCNA_01446 at 1559.110 kb on - strand, within CCNA_01446 at 1559.112 kb on - strand, within CCNA_01446 at 1559.114 kb on + strand, within CCNA_01446 at 1559.142 kb on - strand, within CCNA_01446 at 1559.160 kb on + strand, within CCNA_01446 at 1559.160 kb on + strand, within CCNA_01446 at 1559.182 kb on + strand, within CCNA_01446 at 1559.190 kb on - strand, within CCNA_01446 at 1559.190 kb on - strand, within CCNA_01446 at 1559.190 kb on - strand, within CCNA_01446 at 1559.206 kb on + strand, within CCNA_01446 at 1559.206 kb on + strand, within CCNA_01446 at 1559.212 kb on + strand, within CCNA_01446 at 1559.222 kb on + strand, within CCNA_01446 at 1559.255 kb on + strand, within CCNA_01446 at 1559.260 kb on + strand, within CCNA_01446 at 1559.301 kb on - strand, within CCNA_01446 at 1559.318 kb on + strand, within CCNA_01446 at 1559.331 kb on - strand, within CCNA_01446 at 1559.338 kb on + strand, within CCNA_01446 at 1559.339 kb on + strand, within CCNA_01446 at 1559.354 kb on + strand at 1559.358 kb on + strand at 1559.358 kb on + strand at 1559.366 kb on - strand at 1559.366 kb on - strand at 1559.371 kb on - strand at 1559.375 kb on + strand at 1559.386 kb on + strand at 1559.428 kb on + strand at 1559.433 kb on + strand at 1559.439 kb on + strand at 1559.441 kb on - strand at 1559.450 kb on + strand at 1559.450 kb on + strand at 1559.455 kb on + strand at 1559.460 kb on + strand at 1559.460 kb on + strand at 1559.460 kb on + strand at 1559.460 kb on + strand at 1559.463 kb on - strand at 1559.468 kb on - strand at 1559.468 kb on - strand at 1559.468 kb on - strand at 1559.468 kb on - strand at 1559.474 kb on + strand at 1559.474 kb on + strand at 1559.576 kb on - strand at 1559.626 kb on + strand at 1559.659 kb on + strand, within CCNA_01447 at 1559.739 kb on + strand, within CCNA_01447 at 1559.739 kb on + strand, within CCNA_01447 at 1559.760 kb on + strand, within CCNA_01447 at 1559.773 kb on + strand, within CCNA_01447 at 1559.859 kb on + strand, within CCNA_01447 at 1559.884 kb on - strand, within CCNA_01447 at 1559.886 kb on + strand, within CCNA_01447 at 1560.052 kb on + strand, within CCNA_01447 at 1560.052 kb on + strand, within CCNA_01447 at 1560.058 kb on + strand, within CCNA_01447 at 1560.058 kb on + strand, within CCNA_01447 at 1560.058 kb on + strand, within CCNA_01447 at 1560.058 kb on + strand, within CCNA_01447 at 1560.060 kb on - strand, within CCNA_01447 at 1560.060 kb on - strand, within CCNA_01447 at 1560.060 kb on - strand, within CCNA_01447 at 1560.063 kb on + strand, within CCNA_01447 at 1560.066 kb on - strand, within CCNA_01447 at 1560.066 kb on - strand, within CCNA_01447 at 1560.067 kb on - strand, within CCNA_01447 at 1560.194 kb on + strand, within CCNA_01447 at 1560.209 kb on + strand, within CCNA_01447 at 1560.219 kb on + strand, within CCNA_01447 at 1560.266 kb on + strand, within CCNA_01447 at 1560.267 kb on + strand, within CCNA_01447 at 1560.406 kb on - strand, within CCNA_01447 at 1560.415 kb on + strand, within CCNA_01447 at 1560.459 kb on + strand, within CCNA_01447 at 1560.459 kb on + strand, within CCNA_01447 at 1560.459 kb on + strand, within CCNA_01447 at 1560.459 kb on + strand, within CCNA_01447 at 1560.510 kb on - strand, within CCNA_01447 at 1560.536 kb on - strand, within CCNA_01447 at 1560.536 kb on - strand, within CCNA_01447 at 1560.548 kb on - strand, within CCNA_01447 at 1560.565 kb on + strand, within CCNA_01447 at 1560.605 kb on + strand, within CCNA_01447 at 1560.660 kb on + strand, within CCNA_01447 at 1560.828 kb on + strand at 1560.838 kb on + strand at 1560.956 kb on - strand at 1561.087 kb on - strand, within CCNA_01448 at 1561.180 kb on - strand, within CCNA_01448 at 1561.202 kb on + strand, within CCNA_01448 at 1561.215 kb on + strand, within CCNA_01448 at 1561.242 kb on - strand, within CCNA_01448 at 1561.328 kb on + strand, within CCNA_01448 at 1561.336 kb on - strand, within CCNA_01448 at 1561.336 kb on - strand, within CCNA_01448 at 1561.353 kb on + strand, within CCNA_01448 at 1561.413 kb on + strand, within CCNA_01448 at 1561.468 kb on - strand, within CCNA_01448 at 1561.481 kb on - strand, within CCNA_01448 at 1561.486 kb on + strand, within CCNA_01448 at 1561.493 kb on + strand, within CCNA_01448 at 1561.527 kb on + strand, within CCNA_01448 at 1561.527 kb on + strand, within CCNA_01448 at 1561.527 kb on + strand, within CCNA_01448 at 1561.535 kb on - strand, within CCNA_01448 at 1561.540 kb on - strand, within CCNA_01448 at 1561.663 kb on - strand, within CCNA_01448 at 1561.751 kb on + strand at 1561.753 kb on + strand at 1561.761 kb on - strand at 1561.761 kb on - strand at 1561.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 1,558,573 + CCNA_01446 0.27 -1.9 1,558,576 - CCNA_01446 0.27 -2.2 1,558,584 + CCNA_01446 0.28 -1.3 1,558,587 - CCNA_01446 0.28 -0.7 1,558,588 + CCNA_01446 0.28 -1.0 1,558,618 - CCNA_01446 0.30 -1.9 1,558,620 + CCNA_01446 0.31 -0.9 1,558,623 - CCNA_01446 0.31 -1.2 1,558,694 + CCNA_01446 0.37 -0.1 1,558,704 + CCNA_01446 0.38 -1.4 1,558,723 + CCNA_01446 0.39 -0.1 1,558,731 - CCNA_01446 0.40 -2.3 1,558,731 - CCNA_01446 0.40 -2.9 1,558,761 + CCNA_01446 0.42 -0.5 1,558,763 - CCNA_01446 0.42 -1.9 1,558,790 + CCNA_01446 0.45 -1.9 1,558,795 + CCNA_01446 0.45 -1.2 1,558,849 - CCNA_01446 0.49 -1.3 1,558,922 + CCNA_01446 0.55 -0.5 1,558,956 + CCNA_01446 0.58 +0.9 1,558,956 + CCNA_01446 0.58 -0.6 1,558,956 + CCNA_01446 0.58 -1.1 1,558,956 + CCNA_01446 0.58 -0.4 1,558,956 + CCNA_01446 0.58 -1.0 1,558,965 - CCNA_01446 0.59 -1.0 1,559,013 + CCNA_01446 0.63 -0.7 1,559,016 - CCNA_01446 0.63 -2.6 1,559,021 - CCNA_01446 0.63 -1.8 1,559,021 - CCNA_01446 0.63 -1.2 1,559,040 + CCNA_01446 0.65 -0.4 1,559,048 - CCNA_01446 0.66 -0.5 1,559,061 + CCNA_01446 0.67 -0.2 1,559,092 + CCNA_01446 0.69 -0.2 1,559,092 + CCNA_01446 0.69 -0.9 1,559,100 - CCNA_01446 0.70 -1.6 1,559,100 - CCNA_01446 0.70 -0.5 1,559,100 - CCNA_01446 0.70 -1.0 1,559,102 + CCNA_01446 0.70 -0.1 1,559,110 - CCNA_01446 0.71 -1.5 1,559,112 - CCNA_01446 0.71 -1.1 1,559,114 + CCNA_01446 0.71 -0.6 1,559,142 - CCNA_01446 0.73 -0.6 1,559,160 + CCNA_01446 0.75 -0.5 1,559,160 + CCNA_01446 0.75 -0.3 1,559,182 + CCNA_01446 0.77 -0.5 1,559,190 - CCNA_01446 0.77 -1.5 1,559,190 - CCNA_01446 0.77 +0.3 1,559,190 - CCNA_01446 0.77 -0.1 1,559,206 + CCNA_01446 0.79 -0.4 1,559,206 + CCNA_01446 0.79 +0.0 1,559,212 + CCNA_01446 0.79 +0.2 1,559,222 + CCNA_01446 0.80 -0.0 1,559,255 + CCNA_01446 0.83 -0.8 1,559,260 + CCNA_01446 0.83 -0.5 1,559,301 - CCNA_01446 0.86 -2.8 1,559,318 + CCNA_01446 0.88 +0.4 1,559,331 - CCNA_01446 0.89 -3.3 1,559,338 + CCNA_01446 0.89 -1.0 1,559,339 + CCNA_01446 0.90 +0.3 1,559,354 + -1.3 1,559,358 + -0.1 1,559,358 + +1.2 1,559,366 - +0.9 1,559,366 - -0.4 1,559,371 - -1.0 1,559,375 + +0.6 1,559,386 + -1.0 1,559,428 + -0.0 1,559,433 + -0.1 1,559,439 + +1.1 1,559,441 - -0.6 1,559,450 + +0.5 1,559,450 + +0.7 1,559,455 + +0.2 1,559,460 + +1.1 1,559,460 + +0.7 1,559,460 + +0.1 1,559,460 + +0.3 1,559,463 - -2.0 1,559,468 - +1.1 1,559,468 - -0.1 1,559,468 - +0.5 1,559,468 - -0.5 1,559,474 + +0.7 1,559,474 + +0.0 1,559,576 - -1.5 1,559,626 + -1.6 1,559,659 + CCNA_01447 0.12 -1.2 1,559,739 + CCNA_01447 0.18 -1.6 1,559,739 + CCNA_01447 0.18 -1.9 1,559,760 + CCNA_01447 0.20 -1.6 1,559,773 + CCNA_01447 0.21 -2.0 1,559,859 + CCNA_01447 0.28 -2.1 1,559,884 - CCNA_01447 0.30 -3.2 1,559,886 + CCNA_01447 0.30 -1.9 1,560,052 + CCNA_01447 0.43 -2.7 1,560,052 + CCNA_01447 0.43 -0.7 1,560,058 + CCNA_01447 0.43 -0.8 1,560,058 + CCNA_01447 0.43 -2.2 1,560,058 + CCNA_01447 0.43 -1.6 1,560,058 + CCNA_01447 0.43 -1.5 1,560,060 - CCNA_01447 0.43 +0.9 1,560,060 - CCNA_01447 0.43 -1.0 1,560,060 - CCNA_01447 0.43 -0.7 1,560,063 + CCNA_01447 0.43 -2.0 1,560,066 - CCNA_01447 0.44 +0.2 1,560,066 - CCNA_01447 0.44 -1.1 1,560,067 - CCNA_01447 0.44 -1.6 1,560,194 + CCNA_01447 0.54 -0.5 1,560,209 + CCNA_01447 0.55 -3.0 1,560,219 + CCNA_01447 0.56 -1.5 1,560,266 + CCNA_01447 0.59 -2.8 1,560,267 + CCNA_01447 0.59 +0.5 1,560,406 - CCNA_01447 0.70 +0.2 1,560,415 + CCNA_01447 0.71 -2.3 1,560,459 + CCNA_01447 0.74 -2.0 1,560,459 + CCNA_01447 0.74 -1.2 1,560,459 + CCNA_01447 0.74 -1.6 1,560,459 + CCNA_01447 0.74 -2.4 1,560,510 - CCNA_01447 0.78 -1.3 1,560,536 - CCNA_01447 0.80 -0.8 1,560,536 - CCNA_01447 0.80 -1.6 1,560,548 - CCNA_01447 0.81 -0.7 1,560,565 + CCNA_01447 0.82 -0.3 1,560,605 + CCNA_01447 0.85 -4.0 1,560,660 + CCNA_01447 0.90 -2.0 1,560,828 + +0.5 1,560,838 + +0.4 1,560,956 - +0.2 1,561,087 - CCNA_01448 0.23 -1.4 1,561,180 - CCNA_01448 0.33 -0.1 1,561,202 + CCNA_01448 0.35 +0.5 1,561,215 + CCNA_01448 0.36 +0.1 1,561,242 - CCNA_01448 0.39 +0.8 1,561,328 + CCNA_01448 0.48 +0.4 1,561,336 - CCNA_01448 0.49 -1.5 1,561,336 - CCNA_01448 0.49 -0.3 1,561,353 + CCNA_01448 0.51 +0.6 1,561,413 + CCNA_01448 0.57 +0.1 1,561,468 - CCNA_01448 0.63 -1.1 1,561,481 - CCNA_01448 0.64 +3.5 1,561,486 + CCNA_01448 0.65 +0.6 1,561,493 + CCNA_01448 0.66 +0.2 1,561,527 + CCNA_01448 0.69 +0.0 1,561,527 + CCNA_01448 0.69 +1.2 1,561,527 + CCNA_01448 0.69 +0.4 1,561,535 - CCNA_01448 0.70 -2.1 1,561,540 - CCNA_01448 0.71 -0.3 1,561,663 - CCNA_01448 0.83 -1.0 1,561,751 + -0.5 1,561,753 + -0.7 1,561,761 - +0.2 1,561,761 - -1.4 1,561,788 + +0.2
Or see this region's nucleotide sequence