Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23075

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23070 and ABZR87_RS23075 are separated by 29 nucleotidesABZR87_RS23075 and ABZR87_RS23080 are separated by 60 nucleotides ABZR87_RS23070: ABZR87_RS23070 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 1,534,155 to 1,535,387 _RS23070 ABZR87_RS23075: ABZR87_RS23075 - tannase/feruloyl esterase family alpha/beta hydrolase, at 1,535,417 to 1,537,165 _RS23075 ABZR87_RS23080: ABZR87_RS23080 - feruloyl-CoA synthase, at 1,537,226 to 1,539,130 _RS23080 Position (kb) 1535 1536 1537 1538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.657 kb on + strand, within ABZR87_RS23070at 1534.658 kb on - strand, within ABZR87_RS23070at 1534.658 kb on - strand, within ABZR87_RS23070at 1534.681 kb on + strand, within ABZR87_RS23070at 1534.682 kb on - strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.859 kb on - strand, within ABZR87_RS23070at 1534.859 kb on - strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1535.466 kb on + strandat 1535.466 kb on + strandat 1535.749 kb on - strand, within ABZR87_RS23075at 1535.800 kb on - strand, within ABZR87_RS23075at 1535.886 kb on + strand, within ABZR87_RS23075at 1535.886 kb on + strand, within ABZR87_RS23075at 1535.887 kb on - strand, within ABZR87_RS23075at 1535.947 kb on - strand, within ABZR87_RS23075at 1535.947 kb on - strand, within ABZR87_RS23075at 1536.096 kb on + strand, within ABZR87_RS23075at 1536.097 kb on - strand, within ABZR87_RS23075at 1536.097 kb on - strand, within ABZR87_RS23075at 1536.405 kb on + strand, within ABZR87_RS23075at 1536.405 kb on + strand, within ABZR87_RS23075at 1536.406 kb on - strand, within ABZR87_RS23075at 1536.406 kb on - strand, within ABZR87_RS23075at 1536.406 kb on - strand, within ABZR87_RS23075at 1536.406 kb on - strand, within ABZR87_RS23075at 1536.468 kb on + strand, within ABZR87_RS23075at 1536.534 kb on + strand, within ABZR87_RS23075at 1536.534 kb on + strand, within ABZR87_RS23075at 1536.535 kb on - strand, within ABZR87_RS23075at 1536.612 kb on + strand, within ABZR87_RS23075at 1536.612 kb on + strand, within ABZR87_RS23075at 1536.613 kb on - strand, within ABZR87_RS23075at 1536.618 kb on + strand, within ABZR87_RS23075at 1536.670 kb on + strand, within ABZR87_RS23075at 1536.671 kb on - strand, within ABZR87_RS23075at 1536.671 kb on - strand, within ABZR87_RS23075at 1536.789 kb on + strand, within ABZR87_RS23075at 1536.789 kb on + strand, within ABZR87_RS23075at 1536.793 kb on - strand, within ABZR87_RS23075at 1536.793 kb on - strand, within ABZR87_RS23075at 1536.843 kb on + strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1536.844 kb on - strand, within ABZR87_RS23075at 1537.264 kb on - strandat 1537.588 kb on - strand, within ABZR87_RS23080at 1537.588 kb on - strand, within ABZR87_RS23080at 1537.588 kb on - strand, within ABZR87_RS23080at 1537.743 kb on + strand, within ABZR87_RS23080at 1537.743 kb on + strand, within ABZR87_RS23080at 1537.744 kb on - strand, within ABZR87_RS23080at 1537.744 kb on - strand, within ABZR87_RS23080at 1537.746 kb on + strand, within ABZR87_RS23080at 1537.746 kb on + strand, within ABZR87_RS23080at 1537.894 kb on - strand, within ABZR87_RS23080at 1537.894 kb on - strand, within ABZR87_RS23080at 1538.055 kb on + strand, within ABZR87_RS23080at 1538.055 kb on + strand, within ABZR87_RS23080at 1538.055 kb on + strand, within ABZR87_RS23080at 1538.055 kb on + strand, within ABZR87_RS23080at 1538.056 kb on - strand, within ABZR87_RS23080at 1538.149 kb on - strand, within ABZR87_RS23080

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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1,534,492 + ABZR87_RS23070 0.27 +2.5
1,534,492 + ABZR87_RS23070 0.27 +0.8
1,534,492 + ABZR87_RS23070 0.27 +1.5
1,534,492 + ABZR87_RS23070 0.27 +0.3
1,534,492 + ABZR87_RS23070 0.27 -3.2
1,534,492 + ABZR87_RS23070 0.27 -0.6
1,534,492 + ABZR87_RS23070 0.27 -2.9
1,534,493 - ABZR87_RS23070 0.27 -3.0
1,534,493 - ABZR87_RS23070 0.27 -1.2
1,534,493 - ABZR87_RS23070 0.27 +0.9
1,534,493 - ABZR87_RS23070 0.27 +0.5
1,534,493 - ABZR87_RS23070 0.27 -2.4
1,534,493 - ABZR87_RS23070 0.27 -1.6
1,534,493 - ABZR87_RS23070 0.27 +1.8
1,534,493 - ABZR87_RS23070 0.27 -1.8
1,534,493 - ABZR87_RS23070 0.27 +0.1
1,534,493 - ABZR87_RS23070 0.27 +2.2
1,534,657 + ABZR87_RS23070 0.41 +0.9
1,534,658 - ABZR87_RS23070 0.41 +2.3
1,534,658 - ABZR87_RS23070 0.41 +0.4
1,534,681 + ABZR87_RS23070 0.43 +1.2
1,534,682 - ABZR87_RS23070 0.43 +0.4
1,534,858 + ABZR87_RS23070 0.57 -1.0
1,534,858 + ABZR87_RS23070 0.57 +2.4
1,534,858 + ABZR87_RS23070 0.57 -1.4
1,534,858 + ABZR87_RS23070 0.57 -0.8
1,534,858 + ABZR87_RS23070 0.57 +0.5
1,534,858 + ABZR87_RS23070 0.57 +1.0
1,534,859 - ABZR87_RS23070 0.57 -3.6
1,534,859 - ABZR87_RS23070 0.57 +0.3
1,534,942 + ABZR87_RS23070 0.64 -2.0
1,534,942 + ABZR87_RS23070 0.64 +0.2
1,534,942 + ABZR87_RS23070 0.64 -0.8
1,534,942 + ABZR87_RS23070 0.64 +1.1
1,534,942 + ABZR87_RS23070 0.64 -1.2
1,534,942 + ABZR87_RS23070 0.64 +0.7
1,534,943 - ABZR87_RS23070 0.64 -0.5
1,534,943 - ABZR87_RS23070 0.64 -0.7
1,534,943 - ABZR87_RS23070 0.64 -0.3
1,534,943 - ABZR87_RS23070 0.64 +0.8
1,534,943 - ABZR87_RS23070 0.64 -1.4
1,534,943 - ABZR87_RS23070 0.64 -3.2
1,535,466 + -1.0
1,535,466 + +0.4
1,535,749 - ABZR87_RS23075 0.19 +0.3
1,535,800 - ABZR87_RS23075 0.22 -0.2
1,535,886 + ABZR87_RS23075 0.27 -1.5
1,535,886 + ABZR87_RS23075 0.27 +1.8
1,535,887 - ABZR87_RS23075 0.27 -2.9
1,535,947 - ABZR87_RS23075 0.30 +1.4
1,535,947 - ABZR87_RS23075 0.30 +2.1
1,536,096 + ABZR87_RS23075 0.39 +0.5
1,536,097 - ABZR87_RS23075 0.39 -3.3
1,536,097 - ABZR87_RS23075 0.39 -1.5
1,536,405 + ABZR87_RS23075 0.56 -0.6
1,536,405 + ABZR87_RS23075 0.56 -2.8
1,536,406 - ABZR87_RS23075 0.57 -0.4
1,536,406 - ABZR87_RS23075 0.57 +2.7
1,536,406 - ABZR87_RS23075 0.57 -2.4
1,536,406 - ABZR87_RS23075 0.57 +0.4
1,536,468 + ABZR87_RS23075 0.60 +0.6
1,536,534 + ABZR87_RS23075 0.64 -1.2
1,536,534 + ABZR87_RS23075 0.64 +0.2
1,536,535 - ABZR87_RS23075 0.64 -2.2
1,536,612 + ABZR87_RS23075 0.68 -2.0
1,536,612 + ABZR87_RS23075 0.68 +0.6
1,536,613 - ABZR87_RS23075 0.68 +0.1
1,536,618 + ABZR87_RS23075 0.69 -0.2
1,536,670 + ABZR87_RS23075 0.72 -1.2
1,536,671 - ABZR87_RS23075 0.72 +0.0
1,536,671 - ABZR87_RS23075 0.72 -1.8
1,536,789 + ABZR87_RS23075 0.78 +0.2
1,536,789 + ABZR87_RS23075 0.78 -2.5
1,536,793 - ABZR87_RS23075 0.79 +1.9
1,536,793 - ABZR87_RS23075 0.79 +3.5
1,536,843 + ABZR87_RS23075 0.82 +1.8
1,536,844 - ABZR87_RS23075 0.82 -1.6
1,536,844 - ABZR87_RS23075 0.82 +1.2
1,536,844 - ABZR87_RS23075 0.82 +1.3
1,536,844 - ABZR87_RS23075 0.82 -0.8
1,536,844 - ABZR87_RS23075 0.82 +0.1
1,536,844 - ABZR87_RS23075 0.82 -0.2
1,537,264 - -4.4
1,537,588 - ABZR87_RS23080 0.19 +1.7
1,537,588 - ABZR87_RS23080 0.19 +0.1
1,537,588 - ABZR87_RS23080 0.19 +1.1
1,537,743 + ABZR87_RS23080 0.27 +0.8
1,537,743 + ABZR87_RS23080 0.27 -2.0
1,537,744 - ABZR87_RS23080 0.27 -2.4
1,537,744 - ABZR87_RS23080 0.27 -0.7
1,537,746 + ABZR87_RS23080 0.27 +0.8
1,537,746 + ABZR87_RS23080 0.27 -0.1
1,537,894 - ABZR87_RS23080 0.35 +1.1
1,537,894 - ABZR87_RS23080 0.35 +2.0
1,538,055 + ABZR87_RS23080 0.44 +2.5
1,538,055 + ABZR87_RS23080 0.44 -3.1
1,538,055 + ABZR87_RS23080 0.44 +0.3
1,538,055 + ABZR87_RS23080 0.44 -3.7
1,538,056 - ABZR87_RS23080 0.44 +1.8
1,538,149 - ABZR87_RS23080 0.48 +1.5

Or see this region's nucleotide sequence