Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21720

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21715 and ABZR87_RS21720 are separated by 101 nucleotidesABZR87_RS21720 and ABZR87_RS21725 are separated by 196 nucleotidesABZR87_RS21725 and ABZR87_RS21730 overlap by 1 nucleotides ABZR87_RS21715: ABZR87_RS21715 - TolC family protein, at 1,257,289 to 1,258,458 _RS21715 ABZR87_RS21720: ABZR87_RS21720 - hypothetical protein, at 1,258,560 to 1,258,913 _RS21720 ABZR87_RS21725: ABZR87_RS21725 - heavy metal response regulator transcription factor, at 1,259,110 to 1,259,784 _RS21725 ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226 _RS21730 Position (kb) 1258 1259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1257.976 kb on + strand, within ABZR87_RS21715at 1258.358 kb on + strandat 1258.358 kb on + strandat 1258.561 kb on + strandat 1258.561 kb on + strandat 1258.562 kb on - strandat 1258.583 kb on - strandat 1258.583 kb on - strandat 1258.625 kb on - strand, within ABZR87_RS21720at 1258.625 kb on - strand, within ABZR87_RS21720at 1258.682 kb on - strand, within ABZR87_RS21720at 1258.682 kb on - strand, within ABZR87_RS21720at 1258.715 kb on + strand, within ABZR87_RS21720at 1258.716 kb on - strand, within ABZR87_RS21720at 1258.716 kb on - strand, within ABZR87_RS21720at 1258.717 kb on + strand, within ABZR87_RS21720at 1258.718 kb on - strand, within ABZR87_RS21720at 1259.064 kb on + strandat 1259.064 kb on + strandat 1259.065 kb on - strandat 1259.065 kb on - strandat 1259.153 kb on - strandat 1259.242 kb on + strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.243 kb on - strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.398 kb on + strand, within ABZR87_RS21725at 1259.399 kb on - strand, within ABZR87_RS21725at 1259.569 kb on + strand, within ABZR87_RS21725at 1259.570 kb on - strand, within ABZR87_RS21725at 1259.639 kb on + strand, within ABZR87_RS21725at 1259.892 kb on + strandat 1259.892 kb on + strandat 1259.892 kb on + strandat 1259.893 kb on - strandat 1259.893 kb on - strandat 1259.893 kb on - strandat 1259.898 kb on + strandat 1259.898 kb on + strandat 1259.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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1,257,976 + ABZR87_RS21715 0.59 +0.8
1,258,358 + -3.3
1,258,358 + +0.7
1,258,561 + -2.0
1,258,561 + +1.4
1,258,562 - +1.2
1,258,583 - -3.0
1,258,583 - -3.4
1,258,625 - ABZR87_RS21720 0.18 +1.2
1,258,625 - ABZR87_RS21720 0.18 +1.8
1,258,682 - ABZR87_RS21720 0.34 +1.2
1,258,682 - ABZR87_RS21720 0.34 +1.8
1,258,715 + ABZR87_RS21720 0.44 -1.0
1,258,716 - ABZR87_RS21720 0.44 +2.1
1,258,716 - ABZR87_RS21720 0.44 +0.1
1,258,717 + ABZR87_RS21720 0.44 +1.0
1,258,718 - ABZR87_RS21720 0.45 -0.8
1,259,064 + +0.3
1,259,064 + +1.4
1,259,065 - -2.0
1,259,065 - -3.7
1,259,153 - -0.2
1,259,242 + ABZR87_RS21725 0.20 -0.0
1,259,243 - ABZR87_RS21725 0.20 +2.2
1,259,243 - ABZR87_RS21725 0.20 -2.5
1,259,243 - ABZR87_RS21725 0.20 +1.8
1,259,243 - ABZR87_RS21725 0.20 +0.1
1,259,243 - ABZR87_RS21725 0.20 -2.2
1,259,398 + ABZR87_RS21725 0.43 +0.6
1,259,398 + ABZR87_RS21725 0.43 +0.7
1,259,398 + ABZR87_RS21725 0.43 -2.7
1,259,399 - ABZR87_RS21725 0.43 +0.8
1,259,569 + ABZR87_RS21725 0.68 -1.0
1,259,570 - ABZR87_RS21725 0.68 -2.1
1,259,639 + ABZR87_RS21725 0.78 +1.2
1,259,892 + -0.0
1,259,892 + +0.4
1,259,892 + +0.0
1,259,893 - -1.0
1,259,893 - +0.6
1,259,893 - -2.8
1,259,898 + +1.8
1,259,898 + -2.2
1,259,899 - -3.5

Or see this region's nucleotide sequence