Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20655

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20645 and ABZR87_RS20650 are separated by 16 nucleotidesABZR87_RS20650 and ABZR87_RS20655 are separated by 32 nucleotidesABZR87_RS20655 and ABZR87_RS20660 overlap by 8 nucleotidesABZR87_RS20660 and ABZR87_RS20665 are separated by 2 nucleotides ABZR87_RS20645: ABZR87_RS20645 - aldehyde dehydrogenase, at 1,019,850 to 1,021,352 _RS20645 ABZR87_RS20650: ABZR87_RS20650 - aspartate dehydrogenase, at 1,021,369 to 1,022,172 _RS20650 ABZR87_RS20655: ABZR87_RS20655 - thiamine pyrophosphate-binding protein, at 1,022,205 to 1,023,932 _RS20655 ABZR87_RS20660: ABZR87_RS20660 - SDR family oxidoreductase, at 1,023,925 to 1,024,728 _RS20660 ABZR87_RS20665: ABZR87_RS20665 - IclR family transcriptional regulator, at 1,024,731 to 1,025,558 _RS20665 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1021.742 kb on + strand, within ABZR87_RS20650at 1021.894 kb on + strand, within ABZR87_RS20650at 1022.125 kb on + strandat 1022.125 kb on + strandat 1022.161 kb on + strandat 1022.161 kb on + strandat 1022.161 kb on + strandat 1022.161 kb on + strandat 1022.162 kb on - strandat 1022.162 kb on - strandat 1022.162 kb on - strandat 1022.169 kb on - strandat 1022.434 kb on + strand, within ABZR87_RS20655at 1022.706 kb on + strand, within ABZR87_RS20655at 1022.707 kb on - strand, within ABZR87_RS20655at 1022.707 kb on - strand, within ABZR87_RS20655at 1022.707 kb on - strand, within ABZR87_RS20655at 1022.980 kb on + strand, within ABZR87_RS20655at 1022.992 kb on + strand, within ABZR87_RS20655at 1022.993 kb on - strand, within ABZR87_RS20655at 1023.026 kb on + strand, within ABZR87_RS20655at 1023.031 kb on + strand, within ABZR87_RS20655at 1023.121 kb on + strand, within ABZR87_RS20655at 1023.121 kb on + strand, within ABZR87_RS20655at 1023.486 kb on - strand, within ABZR87_RS20655at 1023.568 kb on + strand, within ABZR87_RS20655at 1023.569 kb on - strand, within ABZR87_RS20655at 1023.590 kb on - strand, within ABZR87_RS20655at 1023.728 kb on - strand, within ABZR87_RS20655at 1023.927 kb on - strandat 1023.954 kb on + strandat 1023.954 kb on + strandat 1023.955 kb on - strandat 1023.955 kb on - strandat 1023.977 kb on + strandat 1024.693 kb on + strandat 1024.694 kb on - strandat 1024.786 kb on + strandat 1024.786 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
1,021,742 + ABZR87_RS20650 0.46 -0.1
1,021,894 + ABZR87_RS20650 0.65 -2.7
1,022,125 + +1.2
1,022,125 + -2.9
1,022,161 + +0.1
1,022,161 + -1.2
1,022,161 + -2.4
1,022,161 + +0.1
1,022,162 - +0.9
1,022,162 - +0.0
1,022,162 - +0.4
1,022,169 - +0.0
1,022,434 + ABZR87_RS20655 0.13 -1.8
1,022,706 + ABZR87_RS20655 0.29 -0.6
1,022,707 - ABZR87_RS20655 0.29 -1.5
1,022,707 - ABZR87_RS20655 0.29 -2.9
1,022,707 - ABZR87_RS20655 0.29 +1.9
1,022,980 + ABZR87_RS20655 0.45 +2.4
1,022,992 + ABZR87_RS20655 0.46 +2.4
1,022,993 - ABZR87_RS20655 0.46 -2.2
1,023,026 + ABZR87_RS20655 0.48 +0.5
1,023,031 + ABZR87_RS20655 0.48 +1.0
1,023,121 + ABZR87_RS20655 0.53 -2.4
1,023,121 + ABZR87_RS20655 0.53 -1.4
1,023,486 - ABZR87_RS20655 0.74 +0.6
1,023,568 + ABZR87_RS20655 0.79 +2.8
1,023,569 - ABZR87_RS20655 0.79 +0.2
1,023,590 - ABZR87_RS20655 0.80 -0.7
1,023,728 - ABZR87_RS20655 0.88 -0.8
1,023,927 - -0.3
1,023,954 + -2.2
1,023,954 + +0.8
1,023,955 - -1.5
1,023,955 - -2.8
1,023,977 + -3.1
1,024,693 + +0.2
1,024,694 - -1.1
1,024,786 + -1.4
1,024,786 + +0.1

Or see this region's nucleotide sequence