Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20375

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20365 and ABZR87_RS20370 are separated by 14 nucleotidesABZR87_RS20370 and ABZR87_RS20375 overlap by 7 nucleotidesABZR87_RS20375 and ABZR87_RS20380 are separated by 43 nucleotides ABZR87_RS20365: ABZR87_RS20365 - cytochrome c, at 957,295 to 958,461 _RS20365 ABZR87_RS20370: ABZR87_RS20370 - ABC transporter ATP-binding protein, at 958,476 to 959,273 _RS20370 ABZR87_RS20375: ABZR87_RS20375 - ABC transporter permease subunit, at 959,267 to 960,304 _RS20375 ABZR87_RS20380: ABZR87_RS20380 - ABC transporter substrate-binding protein, at 960,348 to 961,355 _RS20380 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 958.477 kb on + strandat 958.477 kb on + strandat 958.478 kb on - strandat 958.478 kb on - strandat 958.966 kb on + strand, within ABZR87_RS20370at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.373 kb on + strand, within ABZR87_RS20375at 959.374 kb on - strand, within ABZR87_RS20375at 959.374 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.386 kb on - strand, within ABZR87_RS20375at 959.415 kb on + strand, within ABZR87_RS20375at 959.492 kb on + strand, within ABZR87_RS20375at 959.493 kb on - strand, within ABZR87_RS20375at 959.493 kb on - strand, within ABZR87_RS20375at 959.583 kb on + strand, within ABZR87_RS20375at 959.584 kb on - strand, within ABZR87_RS20375at 959.586 kb on + strand, within ABZR87_RS20375at 959.676 kb on + strand, within ABZR87_RS20375at 959.694 kb on + strand, within ABZR87_RS20375at 959.695 kb on - strand, within ABZR87_RS20375at 959.695 kb on - strand, within ABZR87_RS20375at 959.764 kb on - strand, within ABZR87_RS20375at 959.854 kb on + strand, within ABZR87_RS20375at 959.854 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.895 kb on + strand, within ABZR87_RS20375at 959.896 kb on - strand, within ABZR87_RS20375at 959.896 kb on - strand, within ABZR87_RS20375at 960.367 kb on + strandat 960.368 kb on - strandat 960.410 kb on + strandat 960.439 kb on + strandat 960.487 kb on + strand, within ABZR87_RS20380at 960.488 kb on - strand, within ABZR87_RS20380at 960.488 kb on - strand, within ABZR87_RS20380at 960.541 kb on + strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.542 kb on - strand, within ABZR87_RS20380at 960.724 kb on + strand, within ABZR87_RS20380at 960.725 kb on - strand, within ABZR87_RS20380at 960.725 kb on - strand, within ABZR87_RS20380at 960.754 kb on + strand, within ABZR87_RS20380at 960.755 kb on - strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.132 kb on + strand, within ABZR87_RS20380at 961.255 kb on + strandat 961.255 kb on + strandat 961.256 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
958,477 + +1.0
958,477 + -2.7
958,478 - +0.9
958,478 - -2.4
958,966 + ABZR87_RS20370 0.61 +1.5
959,373 + ABZR87_RS20375 0.10 -2.0
959,373 + ABZR87_RS20375 0.10 -0.1
959,373 + ABZR87_RS20375 0.10 -0.2
959,373 + ABZR87_RS20375 0.10 +2.4
959,373 + ABZR87_RS20375 0.10 +0.6
959,374 - ABZR87_RS20375 0.10 +1.0
959,374 - ABZR87_RS20375 0.10 -3.0
959,386 - ABZR87_RS20375 0.11 -2.7
959,386 - ABZR87_RS20375 0.11 -2.6
959,386 - ABZR87_RS20375 0.11 +1.6
959,415 + ABZR87_RS20375 0.14 +0.2
959,492 + ABZR87_RS20375 0.22 +0.3
959,493 - ABZR87_RS20375 0.22 +0.7
959,493 - ABZR87_RS20375 0.22 -2.5
959,583 + ABZR87_RS20375 0.30 +0.8
959,584 - ABZR87_RS20375 0.31 +1.7
959,586 + ABZR87_RS20375 0.31 +2.4
959,676 + ABZR87_RS20375 0.39 +0.3
959,694 + ABZR87_RS20375 0.41 +4.2
959,695 - ABZR87_RS20375 0.41 -2.4
959,695 - ABZR87_RS20375 0.41 -3.5
959,764 - ABZR87_RS20375 0.48 -1.4
959,854 + ABZR87_RS20375 0.57 -2.6
959,854 + ABZR87_RS20375 0.57 -3.4
959,895 + ABZR87_RS20375 0.61 +0.1
959,895 + ABZR87_RS20375 0.61 +1.1
959,895 + ABZR87_RS20375 0.61 -1.0
959,896 - ABZR87_RS20375 0.61 +0.0
959,896 - ABZR87_RS20375 0.61 -0.2
960,367 + -1.4
960,368 - -1.1
960,410 + -1.0
960,439 + +1.1
960,487 + ABZR87_RS20380 0.14 +0.9
960,488 - ABZR87_RS20380 0.14 -0.4
960,488 - ABZR87_RS20380 0.14 -1.4
960,541 + ABZR87_RS20380 0.19 -2.2
960,542 - ABZR87_RS20380 0.19 +1.0
960,542 - ABZR87_RS20380 0.19 -2.1
960,542 - ABZR87_RS20380 0.19 +0.1
960,724 + ABZR87_RS20380 0.37 -0.4
960,725 - ABZR87_RS20380 0.37 -2.2
960,725 - ABZR87_RS20380 0.37 -2.4
960,754 + ABZR87_RS20380 0.40 -2.0
960,755 - ABZR87_RS20380 0.40 +0.5
961,132 + ABZR87_RS20380 0.78 +1.8
961,132 + ABZR87_RS20380 0.78 +1.1
961,132 + ABZR87_RS20380 0.78 -1.9
961,132 + ABZR87_RS20380 0.78 -2.3
961,255 + +0.7
961,255 + -0.2
961,256 - +0.6

Or see this region's nucleotide sequence