Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19740

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19730 and ABZR87_RS19735 are separated by 97 nucleotidesABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotidesABZR87_RS19740 and ABZR87_RS19745 are separated by 61 nucleotidesABZR87_RS19745 and ABZR87_RS19750 overlap by 4 nucleotides ABZR87_RS19730: ABZR87_RS19730 - MerR family transcriptional regulator, at 804,240 to 804,641 _RS19730 ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161 _RS19735 ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591 _RS19740 ABZR87_RS19745: ABZR87_RS19745 - DoxX family protein, at 805,653 to 806,123 _RS19745 ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878 _RS19750 Position (kb) 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.535 kb on + strand, within ABZR87_RS19730at 804.687 kb on + strandat 804.688 kb on - strandat 804.688 kb on - strandat 804.765 kb on + strandat 804.765 kb on + strandat 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.816 kb on + strand, within ABZR87_RS19735at 804.817 kb on - strand, within ABZR87_RS19735at 804.963 kb on + strand, within ABZR87_RS19735at 804.994 kb on + strand, within ABZR87_RS19735at 804.995 kb on - strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.230 kb on + strand, within ABZR87_RS19740at 805.230 kb on + strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.346 kb on - strand, within ABZR87_RS19740at 805.449 kb on + strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.520 kb on - strand, within ABZR87_RS19740at 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.629 kb on - strandat 805.629 kb on - strandat 805.629 kb on - strandat 805.780 kb on + strand, within ABZR87_RS19745at 805.780 kb on + strand, within ABZR87_RS19745at 805.780 kb on + strand, within ABZR87_RS19745at 805.927 kb on + strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.999 kb on + strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.008 kb on + strand, within ABZR87_RS19745at 806.091 kb on - strandat 806.138 kb on - strandat 806.185 kb on - strandat 806.290 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.542 kb on - strand, within ABZR87_RS19750at 806.590 kb on - strand, within ABZR87_RS19750

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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804,215 + +0.4
804,215 + -2.6
804,215 + +0.6
804,215 + -0.1
804,215 + +2.1
804,216 - +1.1
804,216 - +0.2
804,216 - -2.8
804,216 - -3.1
804,216 - +0.6
804,216 - -2.0
804,216 - -2.2
804,216 - +0.4
804,216 - +1.8
804,216 - +0.6
804,216 - -0.3
804,216 - +2.1
804,216 - -3.0
804,217 + +0.0
804,217 + +0.2
804,217 + -2.6
804,217 + +0.3
804,218 - -0.8
804,218 - -2.2
804,218 - +0.4
804,218 - +0.6
804,218 - -0.0
804,218 - -0.2
804,451 + ABZR87_RS19730 0.52 +0.6
804,451 + ABZR87_RS19730 0.52 -0.4
804,451 + ABZR87_RS19730 0.52 -3.1
804,451 + ABZR87_RS19730 0.52 -0.4
804,451 + ABZR87_RS19730 0.52 -0.5
804,451 + ABZR87_RS19730 0.52 +0.7
804,452 - ABZR87_RS19730 0.53 +1.4
804,452 - ABZR87_RS19730 0.53 -2.8
804,452 - ABZR87_RS19730 0.53 +0.2
804,452 - ABZR87_RS19730 0.53 +1.6
804,452 - ABZR87_RS19730 0.53 +0.4
804,535 + ABZR87_RS19730 0.73 -2.4
804,687 + -1.4
804,688 - -1.8
804,688 - +0.4
804,765 + -2.5
804,765 + +1.0
804,788 - ABZR87_RS19735 0.12 +0.8
804,788 - ABZR87_RS19735 0.12 -1.6
804,788 - ABZR87_RS19735 0.12 +0.8
804,788 - ABZR87_RS19735 0.12 -1.8
804,816 + ABZR87_RS19735 0.18 +1.2
804,817 - ABZR87_RS19735 0.18 +1.7
804,963 + ABZR87_RS19735 0.53 -0.1
804,994 + ABZR87_RS19735 0.60 +0.8
804,995 - ABZR87_RS19735 0.61 +0.7
805,036 + ABZR87_RS19735 0.70 -0.4
805,036 + ABZR87_RS19735 0.70 +0.6
805,230 + ABZR87_RS19740 0.13 +2.0
805,230 + ABZR87_RS19740 0.13 -1.4
805,231 - ABZR87_RS19740 0.13 -0.4
805,231 - ABZR87_RS19740 0.13 +2.7
805,231 - ABZR87_RS19740 0.13 +0.6
805,231 - ABZR87_RS19740 0.13 -2.9
805,231 - ABZR87_RS19740 0.13 -3.6
805,346 - ABZR87_RS19740 0.41 +0.4
805,449 + ABZR87_RS19740 0.66 -2.6
805,450 - ABZR87_RS19740 0.66 -2.8
805,450 - ABZR87_RS19740 0.66 +0.6
805,450 - ABZR87_RS19740 0.66 -1.4
805,520 - ABZR87_RS19740 0.83 +0.1
805,628 + -3.2
805,628 + -0.1
805,628 + +0.3
805,628 + -2.6
805,628 + +0.0
805,628 + -0.3
805,628 + +0.5
805,629 - -0.9
805,629 - +1.8
805,629 - +1.6
805,780 + ABZR87_RS19745 0.27 -0.7
805,780 + ABZR87_RS19745 0.27 -2.2
805,780 + ABZR87_RS19745 0.27 -1.0
805,927 + ABZR87_RS19745 0.58 -0.4
805,928 - ABZR87_RS19745 0.58 -0.1
805,928 - ABZR87_RS19745 0.58 -2.4
805,999 + ABZR87_RS19745 0.73 -2.9
806,000 - ABZR87_RS19745 0.74 +0.2
806,000 - ABZR87_RS19745 0.74 -1.0
806,008 + ABZR87_RS19745 0.75 -2.0
806,091 - +1.6
806,138 - -0.5
806,185 - +0.7
806,290 + ABZR87_RS19750 0.22 +1.4
806,541 + ABZR87_RS19750 0.55 +1.7
806,541 + ABZR87_RS19750 0.55 -3.2
806,542 - ABZR87_RS19750 0.56 -2.2
806,590 - ABZR87_RS19750 0.62 -1.8

Or see this region's nucleotide sequence