Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19730

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19725 and ABZR87_RS19730 are separated by 274 nucleotidesABZR87_RS19730 and ABZR87_RS19735 are separated by 97 nucleotidesABZR87_RS19735 and ABZR87_RS19740 are separated by 13 nucleotides ABZR87_RS19725: ABZR87_RS19725 - TolC family protein, at 802,712 to 803,965 _RS19725 ABZR87_RS19730: ABZR87_RS19730 - MerR family transcriptional regulator, at 804,240 to 804,641 _RS19730 ABZR87_RS19735: ABZR87_RS19735 - hypothetical protein, at 804,739 to 805,161 _RS19735 ABZR87_RS19740: ABZR87_RS19740 - BON domain-containing protein, at 805,175 to 805,591 _RS19740 Position (kb) 804 805Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 803.464 kb on - strand, within ABZR87_RS19725at 803.464 kb on - strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.574 kb on + strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.599 kb on - strand, within ABZR87_RS19725at 803.611 kb on - strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.712 kb on + strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.713 kb on - strand, within ABZR87_RS19725at 803.775 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.835 kb on + strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.836 kb on - strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.839 kb on + strand, within ABZR87_RS19725at 803.840 kb on - strandat 803.840 kb on - strandat 803.840 kb on - strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.150 kb on + strandat 804.151 kb on - strandat 804.151 kb on - strandat 804.169 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.215 kb on + strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.216 kb on - strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.217 kb on + strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.218 kb on - strandat 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.451 kb on + strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.452 kb on - strand, within ABZR87_RS19730at 804.535 kb on + strand, within ABZR87_RS19730at 804.687 kb on + strandat 804.688 kb on - strandat 804.688 kb on - strandat 804.765 kb on + strandat 804.765 kb on + strandat 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.788 kb on - strand, within ABZR87_RS19735at 804.816 kb on + strand, within ABZR87_RS19735at 804.817 kb on - strand, within ABZR87_RS19735at 804.963 kb on + strand, within ABZR87_RS19735at 804.994 kb on + strand, within ABZR87_RS19735at 804.995 kb on - strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.036 kb on + strand, within ABZR87_RS19735at 805.230 kb on + strand, within ABZR87_RS19740at 805.230 kb on + strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.231 kb on - strand, within ABZR87_RS19740at 805.346 kb on - strand, within ABZR87_RS19740at 805.449 kb on + strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.450 kb on - strand, within ABZR87_RS19740at 805.520 kb on - strand, within ABZR87_RS19740at 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.628 kb on + strandat 805.629 kb on - strandat 805.629 kb on - strandat 805.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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803,464 - ABZR87_RS19725 0.60 -0.5
803,464 - ABZR87_RS19725 0.60 -0.4
803,540 + ABZR87_RS19725 0.66 -0.1
803,540 + ABZR87_RS19725 0.66 -3.8
803,541 - ABZR87_RS19725 0.66 +0.1
803,541 - ABZR87_RS19725 0.66 -3.1
803,574 + ABZR87_RS19725 0.69 -2.6
803,575 - ABZR87_RS19725 0.69 +1.6
803,575 - ABZR87_RS19725 0.69 +1.6
803,575 - ABZR87_RS19725 0.69 -3.2
803,577 + ABZR87_RS19725 0.69 +0.7
803,577 + ABZR87_RS19725 0.69 -0.1
803,577 + ABZR87_RS19725 0.69 -1.4
803,577 + ABZR87_RS19725 0.69 -1.0
803,577 + ABZR87_RS19725 0.69 +2.3
803,577 + ABZR87_RS19725 0.69 -0.4
803,577 + ABZR87_RS19725 0.69 +1.0
803,578 - ABZR87_RS19725 0.69 -0.6
803,578 - ABZR87_RS19725 0.69 +0.7
803,578 - ABZR87_RS19725 0.69 +2.1
803,599 - ABZR87_RS19725 0.71 -2.4
803,611 - ABZR87_RS19725 0.72 -2.0
803,712 + ABZR87_RS19725 0.80 -1.7
803,712 + ABZR87_RS19725 0.80 +1.1
803,712 + ABZR87_RS19725 0.80 +0.1
803,712 + ABZR87_RS19725 0.80 +1.4
803,713 - ABZR87_RS19725 0.80 -4.4
803,713 - ABZR87_RS19725 0.80 -1.4
803,713 - ABZR87_RS19725 0.80 -0.6
803,713 - ABZR87_RS19725 0.80 +1.1
803,775 + ABZR87_RS19725 0.85 +2.0
803,835 + ABZR87_RS19725 0.90 -1.4
803,835 + ABZR87_RS19725 0.90 -3.9
803,835 + ABZR87_RS19725 0.90 +0.7
803,835 + ABZR87_RS19725 0.90 -0.2
803,835 + ABZR87_RS19725 0.90 +0.2
803,836 - ABZR87_RS19725 0.90 +0.9
803,836 - ABZR87_RS19725 0.90 +0.8
803,836 - ABZR87_RS19725 0.90 +0.6
803,836 - ABZR87_RS19725 0.90 -4.2
803,836 - ABZR87_RS19725 0.90 -3.0
803,836 - ABZR87_RS19725 0.90 -1.8
803,839 + ABZR87_RS19725 0.90 +0.1
803,839 + ABZR87_RS19725 0.90 -1.6
803,839 + ABZR87_RS19725 0.90 +0.6
803,840 - +2.3
803,840 - -0.9
803,840 - -0.9
804,150 + -1.8
804,150 + -4.3
804,150 + +0.0
804,150 + -2.8
804,150 + -1.4
804,150 + -1.0
804,151 - +0.2
804,151 - +0.6
804,169 + -4.1
804,215 + +0.4
804,215 + -2.6
804,215 + +0.6
804,215 + -0.1
804,215 + +2.1
804,216 - +1.1
804,216 - +0.2
804,216 - -2.8
804,216 - -3.1
804,216 - +0.6
804,216 - -2.0
804,216 - -2.2
804,216 - +0.4
804,216 - +1.8
804,216 - +0.6
804,216 - -0.3
804,216 - +2.1
804,216 - -3.0
804,217 + +0.0
804,217 + +0.2
804,217 + -2.6
804,217 + +0.3
804,218 - -0.8
804,218 - -2.2
804,218 - +0.4
804,218 - +0.6
804,218 - -0.0
804,218 - -0.2
804,451 + ABZR87_RS19730 0.52 +0.6
804,451 + ABZR87_RS19730 0.52 -0.4
804,451 + ABZR87_RS19730 0.52 -3.1
804,451 + ABZR87_RS19730 0.52 -0.4
804,451 + ABZR87_RS19730 0.52 -0.5
804,451 + ABZR87_RS19730 0.52 +0.7
804,452 - ABZR87_RS19730 0.53 +1.4
804,452 - ABZR87_RS19730 0.53 -2.8
804,452 - ABZR87_RS19730 0.53 +0.2
804,452 - ABZR87_RS19730 0.53 +1.6
804,452 - ABZR87_RS19730 0.53 +0.4
804,535 + ABZR87_RS19730 0.73 -2.4
804,687 + -1.4
804,688 - -1.8
804,688 - +0.4
804,765 + -2.5
804,765 + +1.0
804,788 - ABZR87_RS19735 0.12 +0.8
804,788 - ABZR87_RS19735 0.12 -1.6
804,788 - ABZR87_RS19735 0.12 +0.8
804,788 - ABZR87_RS19735 0.12 -1.8
804,816 + ABZR87_RS19735 0.18 +1.2
804,817 - ABZR87_RS19735 0.18 +1.7
804,963 + ABZR87_RS19735 0.53 -0.1
804,994 + ABZR87_RS19735 0.60 +0.8
804,995 - ABZR87_RS19735 0.61 +0.7
805,036 + ABZR87_RS19735 0.70 -0.4
805,036 + ABZR87_RS19735 0.70 +0.6
805,230 + ABZR87_RS19740 0.13 +2.0
805,230 + ABZR87_RS19740 0.13 -1.4
805,231 - ABZR87_RS19740 0.13 -0.4
805,231 - ABZR87_RS19740 0.13 +2.7
805,231 - ABZR87_RS19740 0.13 +0.6
805,231 - ABZR87_RS19740 0.13 -2.9
805,231 - ABZR87_RS19740 0.13 -3.6
805,346 - ABZR87_RS19740 0.41 +0.4
805,449 + ABZR87_RS19740 0.66 -2.6
805,450 - ABZR87_RS19740 0.66 -2.8
805,450 - ABZR87_RS19740 0.66 +0.6
805,450 - ABZR87_RS19740 0.66 -1.4
805,520 - ABZR87_RS19740 0.83 +0.1
805,628 + -3.2
805,628 + -0.1
805,628 + +0.3
805,628 + -2.6
805,628 + +0.0
805,628 + -0.3
805,628 + +0.5
805,629 - -0.9
805,629 - +1.8
805,629 - +1.6

Or see this region's nucleotide sequence