Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19055

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19050 and ABZR87_RS19055 are separated by 109 nucleotidesABZR87_RS19055 and ABZR87_RS19060 overlap by 7 nucleotidesABZR87_RS19060 and ABZR87_RS19065 are separated by 5 nucleotides ABZR87_RS19050: ABZR87_RS19050 - glycosyltransferase family 39 protein, at 635,636 to 637,330 _RS19050 ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411 _RS19055 ABZR87_RS19060: ABZR87_RS19060 - glyoxylate/hydroxypyruvate reductase A, at 638,405 to 639,331 _RS19060 ABZR87_RS19065: ABZR87_RS19065 - class II aldolase/adducin family protein, at 639,337 to 640,137 _RS19065 Position (kb) 637 638 639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 636.516 kb on + strand, within ABZR87_RS19050at 636.517 kb on - strand, within ABZR87_RS19050at 636.517 kb on - strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.714 kb on + strand, within ABZR87_RS19050at 636.715 kb on - strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.924 kb on + strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.925 kb on - strand, within ABZR87_RS19050at 636.981 kb on + strand, within ABZR87_RS19050at 637.122 kb on + strand, within ABZR87_RS19050at 637.192 kb on - strandat 637.367 kb on - strandat 637.374 kb on + strandat 637.400 kb on + strandat 637.417 kb on + strandat 637.417 kb on + strandat 637.417 kb on + strandat 637.418 kb on - strandat 637.418 kb on - strandat 637.464 kb on + strandat 637.464 kb on + strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.692 kb on + strand, within ABZR87_RS19055at 637.692 kb on + strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.693 kb on - strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.794 kb on + strand, within ABZR87_RS19055at 637.912 kb on + strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.913 kb on - strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.971 kb on + strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.972 kb on - strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 637.992 kb on + strand, within ABZR87_RS19055at 638.296 kb on + strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055at 638.297 kb on - strand, within ABZR87_RS19055at 638.374 kb on - strandat 638.409 kb on + strandat 638.409 kb on + strandat 638.483 kb on + strandat 638.483 kb on + strandat 638.484 kb on - strandat 638.484 kb on - strandat 638.484 kb on - strandat 638.767 kb on + strand, within ABZR87_RS19060at 638.767 kb on + strand, within ABZR87_RS19060at 638.768 kb on - strand, within ABZR87_RS19060at 638.768 kb on - strand, within ABZR87_RS19060at 638.811 kb on + strand, within ABZR87_RS19060at 638.811 kb on + strand, within ABZR87_RS19060at 639.237 kb on + strand, within ABZR87_RS19060at 639.238 kb on - strand, within ABZR87_RS19060

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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636,516 + ABZR87_RS19050 0.52 +0.6
636,517 - ABZR87_RS19050 0.52 +3.0
636,517 - ABZR87_RS19050 0.52 +3.1
636,714 + ABZR87_RS19050 0.64 +3.5
636,714 + ABZR87_RS19050 0.64 +2.3
636,714 + ABZR87_RS19050 0.64 -1.0
636,714 + ABZR87_RS19050 0.64 +4.6
636,715 - ABZR87_RS19050 0.64 +2.6
636,924 + ABZR87_RS19050 0.76 +2.9
636,924 + ABZR87_RS19050 0.76 +3.9
636,924 + ABZR87_RS19050 0.76 +4.5
636,924 + ABZR87_RS19050 0.76 +2.8
636,924 + ABZR87_RS19050 0.76 -0.1
636,925 - ABZR87_RS19050 0.76 +2.6
636,925 - ABZR87_RS19050 0.76 +3.3
636,925 - ABZR87_RS19050 0.76 -1.0
636,981 + ABZR87_RS19050 0.79 +1.7
637,122 + ABZR87_RS19050 0.88 +3.0
637,192 - +0.4
637,367 - +0.7
637,374 + +0.2
637,400 + +0.6
637,417 + +0.2
637,417 + -1.0
637,417 + +1.1
637,418 - -0.0
637,418 - -1.5
637,464 + -0.5
637,464 + +0.0
637,465 - -0.1
637,465 - +1.8
637,465 - +1.1
637,692 + ABZR87_RS19055 0.26 +2.0
637,692 + ABZR87_RS19055 0.26 +0.6
637,693 - ABZR87_RS19055 0.26 -0.1
637,693 - ABZR87_RS19055 0.26 +0.0
637,693 - ABZR87_RS19055 0.26 -3.3
637,794 + ABZR87_RS19055 0.36 +3.6
637,794 + ABZR87_RS19055 0.36 -1.4
637,912 + ABZR87_RS19055 0.49 +0.8
637,913 - ABZR87_RS19055 0.49 -0.4
637,913 - ABZR87_RS19055 0.49 -0.7
637,913 - ABZR87_RS19055 0.49 +0.6
637,913 - ABZR87_RS19055 0.49 +0.6
637,913 - ABZR87_RS19055 0.49 +0.9
637,971 + ABZR87_RS19055 0.55 +1.9
637,971 + ABZR87_RS19055 0.55 +1.9
637,971 + ABZR87_RS19055 0.55 +1.0
637,972 - ABZR87_RS19055 0.55 +0.4
637,972 - ABZR87_RS19055 0.55 -1.0
637,992 + ABZR87_RS19055 0.57 +2.4
637,992 + ABZR87_RS19055 0.57 +1.7
638,296 + ABZR87_RS19055 0.88 +0.7
638,297 - ABZR87_RS19055 0.88 -2.7
638,297 - ABZR87_RS19055 0.88 -0.9
638,374 - +0.3
638,409 + +0.0
638,409 + +2.5
638,483 + -4.0
638,483 + +0.6
638,484 - +1.5
638,484 - -0.7
638,484 - +0.8
638,767 + ABZR87_RS19060 0.39 +0.9
638,767 + ABZR87_RS19060 0.39 +0.6
638,768 - ABZR87_RS19060 0.39 -0.6
638,768 - ABZR87_RS19060 0.39 -0.6
638,811 + ABZR87_RS19060 0.44 -2.2
638,811 + ABZR87_RS19060 0.44 -2.6
639,237 + ABZR87_RS19060 0.90 +0.9
639,238 - ABZR87_RS19060 0.90 -3.2

Or see this region's nucleotide sequence