Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17730 and ABZR87_RS17735 are separated by 228 nucleotides ABZR87_RS17735 and ABZR87_RS17740 are separated by 22 nucleotides ABZR87_RS17740 and ABZR87_RS17745 overlap by 4 nucleotides
ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800
_RS17730
ABZR87_RS17735: ABZR87_RS17735 - ABC transporter substrate-binding protein, at 341,029 to 342,078
_RS17735
ABZR87_RS17740: ABZR87_RS17740 - ABC transporter ATP-binding protein, at 342,101 to 343,015
_RS17740
ABZR87_RS17745: ABZR87_RS17745 - ABC transporter permease, at 343,012 to 343,800
_RS17745
Position (kb) 341
342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 340.070 kb on - strand at 340.154 kb on + strand, within ABZR87_RS17730 at 340.220 kb on + strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.221 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.293 kb on - strand, within ABZR87_RS17730 at 340.302 kb on - strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.676 kb on + strand, within ABZR87_RS17730 at 340.773 kb on - strand at 340.822 kb on - strand at 340.822 kb on - strand at 340.829 kb on + strand at 340.831 kb on + strand at 340.832 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.847 kb on - strand at 340.872 kb on - strand at 340.872 kb on - strand at 340.924 kb on - strand at 340.970 kb on + strand at 340.970 kb on + strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.971 kb on - strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.973 kb on + strand at 340.974 kb on - strand at 340.974 kb on - strand at 341.216 kb on - strand, within ABZR87_RS17735 at 341.216 kb on - strand, within ABZR87_RS17735 at 341.245 kb on + strand, within ABZR87_RS17735 at 341.246 kb on - strand, within ABZR87_RS17735 at 341.266 kb on + strand, within ABZR87_RS17735 at 341.296 kb on + strand, within ABZR87_RS17735 at 341.296 kb on + strand, within ABZR87_RS17735 at 341.296 kb on + strand, within ABZR87_RS17735 at 341.297 kb on - strand, within ABZR87_RS17735 at 341.297 kb on - strand, within ABZR87_RS17735 at 341.393 kb on - strand, within ABZR87_RS17735 at 341.464 kb on + strand, within ABZR87_RS17735 at 341.465 kb on - strand, within ABZR87_RS17735 at 341.465 kb on - strand, within ABZR87_RS17735 at 341.465 kb on - strand, within ABZR87_RS17735 at 341.737 kb on + strand, within ABZR87_RS17735 at 341.774 kb on - strand, within ABZR87_RS17735 at 341.938 kb on + strand, within ABZR87_RS17735 at 341.938 kb on + strand, within ABZR87_RS17735 at 341.938 kb on + strand, within ABZR87_RS17735 at 341.938 kb on + strand, within ABZR87_RS17735 at 341.939 kb on - strand, within ABZR87_RS17735 at 341.939 kb on - strand, within ABZR87_RS17735 at 341.939 kb on - strand, within ABZR87_RS17735 at 341.977 kb on + strand at 341.978 kb on - strand at 341.978 kb on - strand at 341.980 kb on + strand at 341.980 kb on + strand at 341.980 kb on + strand at 341.980 kb on + strand at 341.981 kb on - strand at 341.981 kb on - strand at 342.043 kb on + strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.065 kb on - strand at 342.140 kb on + strand at 342.141 kb on - strand at 342.147 kb on + strand at 342.147 kb on + strand at 342.148 kb on - strand at 342.307 kb on + strand, within ABZR87_RS17740 at 342.307 kb on + strand, within ABZR87_RS17740 at 342.308 kb on - strand, within ABZR87_RS17740 at 342.371 kb on + strand, within ABZR87_RS17740 at 342.569 kb on + strand, within ABZR87_RS17740 at 342.569 kb on + strand, within ABZR87_RS17740
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 340,070 - +0.8 340,154 + ABZR87_RS17730 0.11 -1.4 340,220 + ABZR87_RS17730 0.20 +0.6 340,221 - ABZR87_RS17730 0.20 +1.3 340,221 - ABZR87_RS17730 0.20 +1.0 340,221 - ABZR87_RS17730 0.20 -1.5 340,293 - ABZR87_RS17730 0.30 -0.6 340,293 - ABZR87_RS17730 0.30 +1.9 340,293 - ABZR87_RS17730 0.30 -0.5 340,302 - ABZR87_RS17730 0.31 +0.7 340,676 + ABZR87_RS17730 0.83 -3.4 340,676 + ABZR87_RS17730 0.83 -2.5 340,676 + ABZR87_RS17730 0.83 -3.0 340,773 - -3.7 340,822 - +1.2 340,822 - +0.7 340,829 + -0.5 340,831 + -0.3 340,832 - +0.3 340,847 - +2.2 340,847 - -1.3 340,847 - -1.3 340,872 - -0.9 340,872 - -1.4 340,924 - +0.3 340,970 + -0.6 340,970 + +1.5 340,971 - +1.7 340,971 - +1.4 340,971 - -2.5 340,973 + -2.6 340,973 + -1.0 340,973 + +1.1 340,973 + -2.9 340,974 - +0.9 340,974 - +1.6 341,216 - ABZR87_RS17735 0.18 -3.4 341,216 - ABZR87_RS17735 0.18 -0.3 341,245 + ABZR87_RS17735 0.21 +1.1 341,246 - ABZR87_RS17735 0.21 +1.2 341,266 + ABZR87_RS17735 0.23 +2.4 341,296 + ABZR87_RS17735 0.25 -1.7 341,296 + ABZR87_RS17735 0.25 +0.4 341,296 + ABZR87_RS17735 0.25 -0.4 341,297 - ABZR87_RS17735 0.26 +1.5 341,297 - ABZR87_RS17735 0.26 +0.4 341,393 - ABZR87_RS17735 0.35 +0.6 341,464 + ABZR87_RS17735 0.41 +0.4 341,465 - ABZR87_RS17735 0.42 +1.6 341,465 - ABZR87_RS17735 0.42 -2.6 341,465 - ABZR87_RS17735 0.42 -0.3 341,737 + ABZR87_RS17735 0.67 -2.6 341,774 - ABZR87_RS17735 0.71 -1.9 341,938 + ABZR87_RS17735 0.87 -0.4 341,938 + ABZR87_RS17735 0.87 +0.7 341,938 + ABZR87_RS17735 0.87 -2.5 341,938 + ABZR87_RS17735 0.87 -2.1 341,939 - ABZR87_RS17735 0.87 +0.8 341,939 - ABZR87_RS17735 0.87 +2.7 341,939 - ABZR87_RS17735 0.87 -2.9 341,977 + -2.5 341,978 - +0.4 341,978 - +0.8 341,980 + -1.8 341,980 + +1.3 341,980 + +0.6 341,980 + -2.8 341,981 - +3.6 341,981 - -3.8 342,043 + +1.7 342,044 - -3.0 342,044 - -3.2 342,044 - +0.4 342,044 - -0.3 342,065 - -2.3 342,140 + +0.9 342,141 - +1.0 342,147 + -3.2 342,147 + -0.0 342,148 - +2.5 342,307 + ABZR87_RS17740 0.23 +1.3 342,307 + ABZR87_RS17740 0.23 +1.2 342,308 - ABZR87_RS17740 0.23 +0.8 342,371 + ABZR87_RS17740 0.30 +2.1 342,569 + ABZR87_RS17740 0.51 +1.8 342,569 + ABZR87_RS17740 0.51 -1.3
Or see this region's nucleotide sequence