Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16790

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16780 and ABZR87_RS16785 are separated by 53 nucleotidesABZR87_RS16785 and ABZR87_RS16790 are separated by 37 nucleotidesABZR87_RS16790 and ABZR87_RS16795 are separated by 141 nucleotidesABZR87_RS16795 and ABZR87_RS16800 are separated by 171 nucleotides ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865 _RS16780 ABZR87_RS16785: ABZR87_RS16785 - outer membrane protein assembly factor BamE, at 123,919 to 124,308 _RS16785 ABZR87_RS16790: ABZR87_RS16790 - DUF4019 domain-containing protein, at 124,346 to 124,819 _RS16790 ABZR87_RS16795: ABZR87_RS16795 - VOC family protein, at 124,961 to 125,440 _RS16795 ABZR87_RS16800: ABZR87_RS16800 - RidA family protein, at 125,612 to 126,010 _RS16800 Position (kb) 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 123.389 kb on - strandat 123.507 kb on + strandat 123.581 kb on + strandat 123.581 kb on + strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.582 kb on - strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.731 kb on + strandat 123.732 kb on - strandat 123.760 kb on + strandat 123.830 kb on + strandat 123.831 kb on - strandat 123.918 kb on + strandat 123.918 kb on + strandat 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.108 kb on + strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.109 kb on - strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.168 kb on + strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.169 kb on - strand, within ABZR87_RS16785at 124.214 kb on - strand, within ABZR87_RS16785at 124.244 kb on + strand, within ABZR87_RS16785at 124.306 kb on + strandat 124.306 kb on + strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.307 kb on - strandat 124.496 kb on + strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.497 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.638 kb on - strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.639 kb on + strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.640 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.671 kb on - strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.760 kb on + strand, within ABZR87_RS16790at 124.761 kb on - strand, within ABZR87_RS16790at 124.772 kb on + strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.773 kb on - strandat 124.948 kb on - strandat 125.319 kb on + strand, within ABZR87_RS16795at 125.320 kb on - strand, within ABZR87_RS16795at 125.377 kb on - strand, within ABZR87_RS16795at 125.409 kb on + strandat 125.409 kb on + strandat 125.409 kb on + strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.410 kb on - strandat 125.568 kb on + strandat 125.569 kb on - strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.595 kb on + strandat 125.596 kb on - strandat 125.596 kb on - strandat 125.665 kb on - strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800at 125.770 kb on + strand, within ABZR87_RS16800

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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123,389 - -0.8
123,507 + -2.9
123,581 + -2.5
123,581 + -3.5
123,582 - -2.0
123,582 - -1.0
123,582 - +1.3
123,582 - +2.4
123,582 - -1.5
123,731 + +0.6
123,731 + -2.7
123,731 + +0.2
123,731 + -1.2
123,731 + -1.2
123,732 - +1.3
123,760 + -0.8
123,830 + +0.6
123,831 - -3.4
123,918 + -2.2
123,918 + -2.0
124,108 + ABZR87_RS16785 0.48 +0.3
124,108 + ABZR87_RS16785 0.48 -1.9
124,108 + ABZR87_RS16785 0.48 -0.7
124,108 + ABZR87_RS16785 0.48 +0.6
124,109 - ABZR87_RS16785 0.49 +1.8
124,109 - ABZR87_RS16785 0.49 +0.6
124,109 - ABZR87_RS16785 0.49 -1.8
124,168 + ABZR87_RS16785 0.64 -3.1
124,168 + ABZR87_RS16785 0.64 +0.5
124,168 + ABZR87_RS16785 0.64 -0.2
124,168 + ABZR87_RS16785 0.64 -1.2
124,168 + ABZR87_RS16785 0.64 -1.5
124,169 - ABZR87_RS16785 0.64 +0.7
124,169 - ABZR87_RS16785 0.64 -2.2
124,214 - ABZR87_RS16785 0.76 +0.5
124,244 + ABZR87_RS16785 0.83 -3.7
124,306 + +1.2
124,306 + -0.6
124,307 - +2.3
124,307 - -1.8
124,307 - -2.0
124,307 - +0.3
124,496 + ABZR87_RS16790 0.32 -1.5
124,497 - ABZR87_RS16790 0.32 +0.2
124,497 - ABZR87_RS16790 0.32 +2.1
124,638 - ABZR87_RS16790 0.62 +0.6
124,638 - ABZR87_RS16790 0.62 -3.0
124,638 - ABZR87_RS16790 0.62 +1.7
124,638 - ABZR87_RS16790 0.62 -0.7
124,638 - ABZR87_RS16790 0.62 -3.0
124,638 - ABZR87_RS16790 0.62 -0.4
124,639 + ABZR87_RS16790 0.62 +1.5
124,639 + ABZR87_RS16790 0.62 +1.2
124,639 + ABZR87_RS16790 0.62 +2.1
124,640 - ABZR87_RS16790 0.62 +2.0
124,640 - ABZR87_RS16790 0.62 -0.2
124,640 - ABZR87_RS16790 0.62 -2.4
124,640 - ABZR87_RS16790 0.62 +0.1
124,640 - ABZR87_RS16790 0.62 +0.1
124,640 - ABZR87_RS16790 0.62 +0.1
124,671 - ABZR87_RS16790 0.69 -2.9
124,671 - ABZR87_RS16790 0.69 +2.5
124,671 - ABZR87_RS16790 0.69 +2.7
124,760 + ABZR87_RS16790 0.87 +0.8
124,760 + ABZR87_RS16790 0.87 -1.8
124,760 + ABZR87_RS16790 0.87 -0.3
124,760 + ABZR87_RS16790 0.87 +1.1
124,761 - ABZR87_RS16790 0.88 -1.3
124,772 + -0.6
124,773 - +2.4
124,773 - -2.0
124,773 - +1.4
124,773 - -2.5
124,948 - +0.2
125,319 + ABZR87_RS16795 0.75 +1.6
125,320 - ABZR87_RS16795 0.75 +1.4
125,377 - ABZR87_RS16795 0.87 -3.4
125,409 + -1.8
125,409 + +0.9
125,409 + -0.9
125,410 - +1.4
125,410 - +0.2
125,410 - +0.2
125,568 + +1.1
125,569 - -0.9
125,595 + -3.4
125,595 + +3.8
125,595 + +3.0
125,596 - -0.8
125,596 - +0.9
125,665 - ABZR87_RS16800 0.13 +1.2
125,770 + ABZR87_RS16800 0.40 +1.6
125,770 + ABZR87_RS16800 0.40 +0.8

Or see this region's nucleotide sequence