Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16570

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16555 and ABZR87_RS16560 overlap by 4 nucleotidesABZR87_RS16560 and ABZR87_RS16565 are separated by 19 nucleotidesABZR87_RS16565 and ABZR87_RS16570 are separated by 143 nucleotidesABZR87_RS16570 and ABZR87_RS16575 are separated by 46 nucleotidesABZR87_RS16575 and ABZR87_RS16580 are separated by 2 nucleotides ABZR87_RS16555: ABZR87_RS16555 - AMP-binding protein, at 64,021 to 65,637 _RS16555 ABZR87_RS16560: ABZR87_RS16560 - thioesterase family protein, at 65,634 to 66,062 _RS16560 ABZR87_RS16565: ABZR87_RS16565 - RidA family protein, at 66,082 to 66,474 _RS16565 ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469 _RS16570 ABZR87_RS16575: ABZR87_RS16575 - ABC transporter ATP-binding protein, at 67,516 to 68,268 _RS16575 ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125 _RS16580 Position (kb) 66 67 68Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 65.643 kb on + strandat 65.644 kb on - strandat 65.775 kb on + strand, within ABZR87_RS16560at 65.776 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.975 kb on + strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 66.060 kb on + strandat 66.510 kb on + strandat 66.519 kb on - strandat 66.519 kb on - strandat 66.680 kb on - strandat 66.780 kb on - strand, within ABZR87_RS16570at 67.002 kb on + strand, within ABZR87_RS16570at 67.003 kb on - strand, within ABZR87_RS16570at 67.166 kb on - strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.238 kb on - strand, within ABZR87_RS16570at 67.238 kb on - strand, within ABZR87_RS16570at 67.315 kb on + strand, within ABZR87_RS16570at 67.315 kb on + strand, within ABZR87_RS16570at 67.405 kb on + strandat 67.405 kb on + strandat 67.406 kb on - strandat 67.539 kb on - strandat 67.539 kb on - strandat 67.539 kb on - strandat 67.596 kb on + strand, within ABZR87_RS16575at 67.597 kb on - strand, within ABZR87_RS16575at 67.597 kb on - strand, within ABZR87_RS16575at 67.597 kb on - strand, within ABZR87_RS16575at 67.616 kb on + strand, within ABZR87_RS16575at 67.616 kb on + strand, within ABZR87_RS16575at 67.616 kb on + strand, within ABZR87_RS16575at 67.616 kb on + strand, within ABZR87_RS16575at 67.617 kb on - strand, within ABZR87_RS16575at 67.724 kb on + strand, within ABZR87_RS16575at 67.725 kb on - strand, within ABZR87_RS16575at 67.889 kb on + strand, within ABZR87_RS16575at 67.889 kb on + strand, within ABZR87_RS16575at 67.889 kb on + strand, within ABZR87_RS16575at 68.101 kb on - strand, within ABZR87_RS16575at 68.101 kb on - strand, within ABZR87_RS16575at 68.101 kb on - strand, within ABZR87_RS16575at 68.208 kb on - strandat 68.338 kb on + strandat 68.338 kb on + strandat 68.338 kb on + strandat 68.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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65,643 + +1.1
65,644 - -2.5
65,775 + ABZR87_RS16560 0.33 -3.4
65,776 - ABZR87_RS16560 0.33 +2.4
65,885 - ABZR87_RS16560 0.59 +3.4
65,885 - ABZR87_RS16560 0.59 +0.1
65,885 - ABZR87_RS16560 0.59 +1.2
65,975 + ABZR87_RS16560 0.79 -4.3
65,988 - ABZR87_RS16560 0.83 +0.3
65,988 - ABZR87_RS16560 0.83 -0.6
65,988 - ABZR87_RS16560 0.83 -2.4
66,060 + -0.6
66,510 + +0.8
66,519 - +0.0
66,519 - -1.1
66,680 - +1.2
66,780 - ABZR87_RS16570 0.19 -1.2
67,002 + ABZR87_RS16570 0.45 +0.9
67,003 - ABZR87_RS16570 0.45 -1.3
67,166 - ABZR87_RS16570 0.64 -5.0
67,237 + ABZR87_RS16570 0.73 -3.4
67,237 + ABZR87_RS16570 0.73 +1.1
67,237 + ABZR87_RS16570 0.73 +0.4
67,238 - ABZR87_RS16570 0.73 +2.1
67,238 - ABZR87_RS16570 0.73 +0.3
67,315 + ABZR87_RS16570 0.82 +1.4
67,315 + ABZR87_RS16570 0.82 +1.9
67,405 + -1.8
67,405 + +3.2
67,406 - +1.6
67,539 - +2.3
67,539 - +1.3
67,539 - +1.7
67,596 + ABZR87_RS16575 0.11 -4.7
67,597 - ABZR87_RS16575 0.11 -0.6
67,597 - ABZR87_RS16575 0.11 +1.3
67,597 - ABZR87_RS16575 0.11 +0.3
67,616 + ABZR87_RS16575 0.13 +0.4
67,616 + ABZR87_RS16575 0.13 -0.8
67,616 + ABZR87_RS16575 0.13 -0.1
67,616 + ABZR87_RS16575 0.13 +0.8
67,617 - ABZR87_RS16575 0.13 +1.3
67,724 + ABZR87_RS16575 0.28 -0.8
67,725 - ABZR87_RS16575 0.28 -0.0
67,889 + ABZR87_RS16575 0.50 -0.6
67,889 + ABZR87_RS16575 0.50 -0.1
67,889 + ABZR87_RS16575 0.50 +1.2
68,101 - ABZR87_RS16575 0.78 +0.5
68,101 - ABZR87_RS16575 0.78 -0.2
68,101 - ABZR87_RS16575 0.78 -4.4
68,208 - -3.9
68,338 + +0.2
68,338 + -3.2
68,338 + +0.6
68,339 - +0.4

Or see this region's nucleotide sequence