Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16355

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16350 and ABZR87_RS16355 are separated by 205 nucleotidesABZR87_RS16355 and ABZR87_RS16360 are separated by 127 nucleotidesABZR87_RS16360 and ABZR87_RS16365 are separated by 52 nucleotides ABZR87_RS16350: ABZR87_RS16350 - LysR family transcriptional regulator, at 20,036 to 20,908 _RS16350 ABZR87_RS16355: ABZR87_RS16355 - quinone oxidoreductase, at 21,114 to 22,112 _RS16355 ABZR87_RS16360: ABZR87_RS16360 - YciI family protein, at 22,240 to 22,557 _RS16360 ABZR87_RS16365: ABZR87_RS16365 - ClcB-like voltage-gated chloride channel protein, at 22,610 to 24,013 _RS16365 Position (kb) 21 22 23Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 20.292 kb on - strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.418 kb on + strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.629 kb on + strand, within ABZR87_RS16350at 20.629 kb on + strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.887 kb on - strandat 21.088 kb on + strandat 21.252 kb on + strand, within ABZR87_RS16355at 21.253 kb on - strand, within ABZR87_RS16355at 21.253 kb on - strand, within ABZR87_RS16355at 21.322 kb on + strand, within ABZR87_RS16355at 21.322 kb on + strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.529 kb on + strand, within ABZR87_RS16355at 21.552 kb on - strand, within ABZR87_RS16355at 21.942 kb on + strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.963 kb on + strand, within ABZR87_RS16355at 22.029 kb on - strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.033 kb on - strandat 22.033 kb on - strandat 22.033 kb on - strandat 22.149 kb on - strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.215 kb on - strandat 22.215 kb on - strandat 22.246 kb on + strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.264 kb on + strandat 22.264 kb on + strandat 22.265 kb on - strandat 22.265 kb on - strandat 22.331 kb on - strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.555 kb on + strandat 22.556 kb on - strandat 22.556 kb on - strandat 22.578 kb on + strandat 22.578 kb on + strandat 22.579 kb on - strandat 22.579 kb on - strandat 22.798 kb on + strand, within ABZR87_RS16365at 22.798 kb on + strand, within ABZR87_RS16365at 22.799 kb on - strand, within ABZR87_RS16365at 22.885 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.992 kb on + strand, within ABZR87_RS16365at 22.993 kb on - strand, within ABZR87_RS16365

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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20,292 - ABZR87_RS16350 0.29 +2.8
20,316 + ABZR87_RS16350 0.32 +2.1
20,316 + ABZR87_RS16350 0.32 -3.4
20,316 + ABZR87_RS16350 0.32 -0.5
20,316 + ABZR87_RS16350 0.32 +1.1
20,316 + ABZR87_RS16350 0.32 +1.1
20,316 + ABZR87_RS16350 0.32 +4.5
20,316 + ABZR87_RS16350 0.32 +1.5
20,316 + ABZR87_RS16350 0.32 +2.4
20,316 + ABZR87_RS16350 0.32 -1.8
20,317 - ABZR87_RS16350 0.32 -2.0
20,317 - ABZR87_RS16350 0.32 -3.3
20,317 - ABZR87_RS16350 0.32 +2.6
20,317 - ABZR87_RS16350 0.32 +0.6
20,317 - ABZR87_RS16350 0.32 -2.3
20,317 - ABZR87_RS16350 0.32 -2.7
20,317 - ABZR87_RS16350 0.32 +0.8
20,418 + ABZR87_RS16350 0.44 +1.0
20,419 - ABZR87_RS16350 0.44 +0.5
20,419 - ABZR87_RS16350 0.44 +2.1
20,419 - ABZR87_RS16350 0.44 +1.0
20,419 - ABZR87_RS16350 0.44 +1.1
20,629 + ABZR87_RS16350 0.68 -1.5
20,629 + ABZR87_RS16350 0.68 +0.2
20,630 - ABZR87_RS16350 0.68 +1.4
20,630 - ABZR87_RS16350 0.68 -0.2
20,630 - ABZR87_RS16350 0.68 -1.8
20,630 - ABZR87_RS16350 0.68 -0.2
20,630 - ABZR87_RS16350 0.68 -3.4
20,887 - -3.7
21,088 + +0.8
21,252 + ABZR87_RS16355 0.14 -2.0
21,253 - ABZR87_RS16355 0.14 +3.0
21,253 - ABZR87_RS16355 0.14 -1.8
21,322 + ABZR87_RS16355 0.21 +0.1
21,322 + ABZR87_RS16355 0.21 -3.2
21,323 - ABZR87_RS16355 0.21 -1.5
21,323 - ABZR87_RS16355 0.21 +5.9
21,323 - ABZR87_RS16355 0.21 +1.4
21,408 + ABZR87_RS16355 0.29 +0.7
21,408 + ABZR87_RS16355 0.29 -0.7
21,408 + ABZR87_RS16355 0.29 -1.8
21,529 + ABZR87_RS16355 0.42 +0.6
21,552 - ABZR87_RS16355 0.44 +0.9
21,942 + ABZR87_RS16355 0.83 +1.6
21,943 - ABZR87_RS16355 0.83 +0.9
21,943 - ABZR87_RS16355 0.83 +1.4
21,943 - ABZR87_RS16355 0.83 -2.4
21,963 + ABZR87_RS16355 0.85 +1.4
22,029 - +1.0
22,032 + +1.0
22,032 + -0.2
22,032 + -0.8
22,032 + -1.0
22,032 + +1.0
22,032 + +1.0
22,033 - +0.5
22,033 - +1.4
22,033 - +1.9
22,149 - +1.1
22,214 + +1.6
22,214 + -0.1
22,214 + -0.2
22,214 + +0.8
22,214 + +1.0
22,215 - -4.2
22,215 - +1.1
22,246 + -1.0
22,247 - -3.3
22,247 - +0.7
22,247 - +1.3
22,247 - +1.0
22,264 + -0.6
22,264 + -2.6
22,265 - +2.3
22,265 - +0.5
22,331 - ABZR87_RS16360 0.29 +1.5
22,479 + ABZR87_RS16360 0.75 +0.3
22,479 + ABZR87_RS16360 0.75 -3.8
22,479 + ABZR87_RS16360 0.75 -0.4
22,479 + ABZR87_RS16360 0.75 -0.2
22,480 - ABZR87_RS16360 0.75 +0.4
22,480 - ABZR87_RS16360 0.75 -0.8
22,480 - ABZR87_RS16360 0.75 -3.5
22,480 - ABZR87_RS16360 0.75 -2.2
22,480 - ABZR87_RS16360 0.75 -0.6
22,555 + -1.0
22,556 - +3.4
22,556 - -0.7
22,578 + -2.5
22,578 + +2.0
22,579 - -0.2
22,579 - -3.6
22,798 + ABZR87_RS16365 0.13 -0.5
22,798 + ABZR87_RS16365 0.13 -2.2
22,799 - ABZR87_RS16365 0.13 +1.3
22,885 + ABZR87_RS16365 0.20 +0.8
22,937 + ABZR87_RS16365 0.23 -2.7
22,937 + ABZR87_RS16365 0.23 +0.9
22,937 + ABZR87_RS16365 0.23 -1.1
22,937 + ABZR87_RS16365 0.23 -3.5
22,937 + ABZR87_RS16365 0.23 +0.7
22,937 + ABZR87_RS16365 0.23 +0.9
22,938 - ABZR87_RS16365 0.23 -1.0
22,938 - ABZR87_RS16365 0.23 +0.2
22,938 - ABZR87_RS16365 0.23 -0.5
22,938 - ABZR87_RS16365 0.23 -1.2
22,938 - ABZR87_RS16365 0.23 +1.1
22,938 - ABZR87_RS16365 0.23 +1.6
22,939 + ABZR87_RS16365 0.23 -0.8
22,939 + ABZR87_RS16365 0.23 +2.4
22,939 + ABZR87_RS16365 0.23 +0.6
22,939 + ABZR87_RS16365 0.23 -0.8
22,939 + ABZR87_RS16365 0.23 -2.8
22,939 + ABZR87_RS16365 0.23 +1.9
22,940 - ABZR87_RS16365 0.24 +1.1
22,940 - ABZR87_RS16365 0.24 +1.4
22,940 - ABZR87_RS16365 0.24 -1.9
22,992 + ABZR87_RS16365 0.27 +0.9
22,993 - ABZR87_RS16365 0.27 -0.8

Or see this region's nucleotide sequence