Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15780

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15770 and ABZR87_RS15775 are separated by 84 nucleotidesABZR87_RS15775 and ABZR87_RS15780 overlap by 8 nucleotidesABZR87_RS15780 and ABZR87_RS15785 are separated by 22 nucleotides ABZR87_RS15770: ABZR87_RS15770 - branched-chain amino acid ABC transporter permease, at 3,329,767 to 3,330,636 _RS15770 ABZR87_RS15775: ABZR87_RS15775 - 4-carboxymuconolactone decarboxylase, at 3,330,721 to 3,331,119 _RS15775 ABZR87_RS15780: ABZR87_RS15780 - 3-oxoadipate enol-lactonase, at 3,331,112 to 3,331,924 _RS15780 ABZR87_RS15785: ABZR87_RS15785 - 3-carboxy-cis,cis-muconate cycloisomerase, at 3,331,947 to 3,333,308 _RS15785 Position (kb) 3331 3332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3330.268 kb on + strand, within ABZR87_RS15770at 3330.303 kb on - strand, within ABZR87_RS15770at 3330.374 kb on + strand, within ABZR87_RS15770at 3330.374 kb on + strand, within ABZR87_RS15770at 3330.375 kb on - strand, within ABZR87_RS15770at 3330.494 kb on + strand, within ABZR87_RS15770at 3330.495 kb on - strand, within ABZR87_RS15770at 3330.597 kb on - strandat 3330.723 kb on - strandat 3330.809 kb on + strand, within ABZR87_RS15775at 3330.809 kb on + strand, within ABZR87_RS15775at 3330.809 kb on + strand, within ABZR87_RS15775at 3330.990 kb on - strand, within ABZR87_RS15775at 3331.101 kb on - strandat 3331.174 kb on - strandat 3331.224 kb on + strand, within ABZR87_RS15780at 3331.224 kb on + strand, within ABZR87_RS15780at 3331.224 kb on + strand, within ABZR87_RS15780at 3331.484 kb on - strand, within ABZR87_RS15780at 3331.526 kb on - strand, within ABZR87_RS15780at 3331.668 kb on + strand, within ABZR87_RS15780at 3331.669 kb on - strand, within ABZR87_RS15780at 3331.669 kb on - strand, within ABZR87_RS15780at 3331.669 kb on - strand, within ABZR87_RS15780at 3331.813 kb on + strand, within ABZR87_RS15780at 3331.813 kb on + strand, within ABZR87_RS15780at 3331.814 kb on - strand, within ABZR87_RS15780at 3331.814 kb on - strand, within ABZR87_RS15780at 3331.814 kb on - strand, within ABZR87_RS15780at 3331.814 kb on - strand, within ABZR87_RS15780at 3331.814 kb on - strand, within ABZR87_RS15780at 3331.890 kb on + strandat 3331.891 kb on - strandat 3332.012 kb on - strandat 3332.012 kb on - strandat 3332.066 kb on + strandat 3332.094 kb on + strand, within ABZR87_RS15785at 3332.094 kb on + strand, within ABZR87_RS15785at 3332.095 kb on - strand, within ABZR87_RS15785at 3332.121 kb on + strand, within ABZR87_RS15785at 3332.121 kb on + strand, within ABZR87_RS15785at 3332.122 kb on - strand, within ABZR87_RS15785at 3332.225 kb on + strand, within ABZR87_RS15785at 3332.232 kb on + strand, within ABZR87_RS15785at 3332.233 kb on - strand, within ABZR87_RS15785at 3332.466 kb on - strand, within ABZR87_RS15785at 3332.466 kb on - strand, within ABZR87_RS15785at 3332.466 kb on - strand, within ABZR87_RS15785at 3332.873 kb on + strand, within ABZR87_RS15785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
3,330,268 + ABZR87_RS15770 0.58 +1.0
3,330,303 - ABZR87_RS15770 0.62 +0.6
3,330,374 + ABZR87_RS15770 0.70 -2.6
3,330,374 + ABZR87_RS15770 0.70 +1.2
3,330,375 - ABZR87_RS15770 0.70 +0.0
3,330,494 + ABZR87_RS15770 0.84 +0.8
3,330,495 - ABZR87_RS15770 0.84 -0.8
3,330,597 - +0.4
3,330,723 - -4.6
3,330,809 + ABZR87_RS15775 0.22 +1.8
3,330,809 + ABZR87_RS15775 0.22 -0.2
3,330,809 + ABZR87_RS15775 0.22 -2.8
3,330,990 - ABZR87_RS15775 0.67 +0.0
3,331,101 - -1.4
3,331,174 - +4.3
3,331,224 + ABZR87_RS15780 0.14 -1.7
3,331,224 + ABZR87_RS15780 0.14 +0.6
3,331,224 + ABZR87_RS15780 0.14 -0.3
3,331,484 - ABZR87_RS15780 0.46 -3.5
3,331,526 - ABZR87_RS15780 0.51 -0.4
3,331,668 + ABZR87_RS15780 0.68 +1.1
3,331,669 - ABZR87_RS15780 0.69 -0.9
3,331,669 - ABZR87_RS15780 0.69 +2.5
3,331,669 - ABZR87_RS15780 0.69 +0.7
3,331,813 + ABZR87_RS15780 0.86 +0.6
3,331,813 + ABZR87_RS15780 0.86 +0.9
3,331,814 - ABZR87_RS15780 0.86 +0.0
3,331,814 - ABZR87_RS15780 0.86 -1.0
3,331,814 - ABZR87_RS15780 0.86 -2.1
3,331,814 - ABZR87_RS15780 0.86 -2.8
3,331,814 - ABZR87_RS15780 0.86 -2.3
3,331,890 + +1.4
3,331,891 - -0.2
3,332,012 - -1.3
3,332,012 - -4.3
3,332,066 + +1.4
3,332,094 + ABZR87_RS15785 0.11 -0.7
3,332,094 + ABZR87_RS15785 0.11 -3.2
3,332,095 - ABZR87_RS15785 0.11 -4.6
3,332,121 + ABZR87_RS15785 0.13 +0.3
3,332,121 + ABZR87_RS15785 0.13 -0.6
3,332,122 - ABZR87_RS15785 0.13 -1.5
3,332,225 + ABZR87_RS15785 0.20 +0.6
3,332,232 + ABZR87_RS15785 0.21 -1.8
3,332,233 - ABZR87_RS15785 0.21 -2.0
3,332,466 - ABZR87_RS15785 0.38 +0.6
3,332,466 - ABZR87_RS15785 0.38 +0.8
3,332,466 - ABZR87_RS15785 0.38 +2.3
3,332,873 + ABZR87_RS15785 0.68 +0.1

Or see this region's nucleotide sequence