Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10535 and ABZR87_RS10540 are separated by 10 nucleotides ABZR87_RS10540 and ABZR87_RS10545 are separated by 118 nucleotides ABZR87_RS10545 and ABZR87_RS10550 are separated by 61 nucleotides
ABZR87_RS10535: ABZR87_RS10535 - tryptophan--tRNA ligase, at 2,228,893 to 2,230,095
_RS10535
ABZR87_RS10540: ABZR87_RS10540 - class I SAM-dependent methyltransferase, at 2,230,106 to 2,230,672
_RS10540
ABZR87_RS10545: ABZR87_RS10545 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,230,791 to 2,231,675
_RS10545
ABZR87_RS10550: ABZR87_RS10550 - outer membrane protein assembly factor BamC, at 2,231,737 to 2,232,933
_RS10550
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2230.087 kb on + strand at 2230.088 kb on - strand at 2230.088 kb on - strand at 2230.096 kb on + strand at 2230.097 kb on - strand at 2230.132 kb on + strand at 2230.133 kb on - strand at 2230.394 kb on + strand, within ABZR87_RS10540 at 2230.395 kb on - strand, within ABZR87_RS10540 at 2230.395 kb on - strand, within ABZR87_RS10540 at 2230.457 kb on + strand, within ABZR87_RS10540 at 2230.457 kb on + strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.458 kb on - strand, within ABZR87_RS10540 at 2230.571 kb on + strand, within ABZR87_RS10540 at 2230.571 kb on + strand, within ABZR87_RS10540 at 2230.572 kb on - strand, within ABZR87_RS10540 at 2230.608 kb on - strand, within ABZR87_RS10540 at 2230.662 kb on - strand at 2230.693 kb on + strand at 2230.693 kb on + strand at 2230.745 kb on + strand at 2230.746 kb on - strand at 2230.760 kb on + strand at 2231.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 2,230,087 + -2.1 2,230,088 - +0.3 2,230,088 - +0.0 2,230,096 + -1.1 2,230,097 - +0.8 2,230,132 + +0.6 2,230,133 - +1.3 2,230,394 + ABZR87_RS10540 0.51 -4.0 2,230,395 - ABZR87_RS10540 0.51 +0.7 2,230,395 - ABZR87_RS10540 0.51 -0.2 2,230,457 + ABZR87_RS10540 0.62 -0.9 2,230,457 + ABZR87_RS10540 0.62 +0.7 2,230,458 - ABZR87_RS10540 0.62 -2.5 2,230,458 - ABZR87_RS10540 0.62 -1.0 2,230,458 - ABZR87_RS10540 0.62 -1.3 2,230,571 + ABZR87_RS10540 0.82 +0.4 2,230,571 + ABZR87_RS10540 0.82 +0.5 2,230,572 - ABZR87_RS10540 0.82 -0.2 2,230,608 - ABZR87_RS10540 0.89 +1.3 2,230,662 - -3.2 2,230,693 + -4.0 2,230,693 + -2.3 2,230,745 + -1.8 2,230,746 - -1.1 2,230,760 + +3.4 2,231,702 + +0.8
Or see this region's nucleotide sequence