Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09580

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09575 and ABZR87_RS09580 are separated by 0 nucleotidesABZR87_RS09580 and ABZR87_RS09585 are separated by 190 nucleotidesABZR87_RS09585 and ABZR87_RS09590 are separated by 126 nucleotides ABZR87_RS09575: ABZR87_RS09575 - PA0069 family radical SAM protein, at 2,034,095 to 2,035,219 _RS09575 ABZR87_RS09580: ABZR87_RS09580 - TM2 domain-containing protein, at 2,035,220 to 2,035,675 _RS09580 ABZR87_RS09585: ABZR87_RS09585 - hypothetical protein, at 2,035,866 to 2,036,039 _RS09585 ABZR87_RS09590: ABZR87_RS09590 - hypothetical protein, at 2,036,166 to 2,036,555 _RS09590 Position (kb) 2035 2036Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2034.330 kb on - strand, within ABZR87_RS09575at 2034.357 kb on - strand, within ABZR87_RS09575at 2034.357 kb on - strand, within ABZR87_RS09575at 2034.357 kb on - strand, within ABZR87_RS09575at 2034.357 kb on - strand, within ABZR87_RS09575at 2034.383 kb on + strand, within ABZR87_RS09575at 2034.383 kb on + strand, within ABZR87_RS09575at 2034.383 kb on + strand, within ABZR87_RS09575at 2034.383 kb on + strand, within ABZR87_RS09575at 2034.383 kb on + strand, within ABZR87_RS09575at 2034.384 kb on - strand, within ABZR87_RS09575at 2034.384 kb on - strand, within ABZR87_RS09575at 2034.384 kb on - strand, within ABZR87_RS09575at 2034.384 kb on - strand, within ABZR87_RS09575at 2034.479 kb on + strand, within ABZR87_RS09575at 2034.480 kb on - strand, within ABZR87_RS09575at 2034.480 kb on - strand, within ABZR87_RS09575at 2034.480 kb on - strand, within ABZR87_RS09575at 2034.507 kb on + strand, within ABZR87_RS09575at 2034.521 kb on + strand, within ABZR87_RS09575at 2034.521 kb on + strand, within ABZR87_RS09575at 2034.522 kb on - strand, within ABZR87_RS09575at 2034.522 kb on - strand, within ABZR87_RS09575at 2034.881 kb on + strand, within ABZR87_RS09575at 2034.882 kb on + strand, within ABZR87_RS09575at 2034.882 kb on - strand, within ABZR87_RS09575at 2034.890 kb on + strand, within ABZR87_RS09575at 2034.891 kb on - strand, within ABZR87_RS09575at 2034.891 kb on - strand, within ABZR87_RS09575at 2034.891 kb on - strand, within ABZR87_RS09575at 2034.891 kb on - strand, within ABZR87_RS09575at 2034.891 kb on - strand, within ABZR87_RS09575at 2035.013 kb on + strand, within ABZR87_RS09575at 2035.014 kb on - strand, within ABZR87_RS09575at 2035.014 kb on - strand, within ABZR87_RS09575at 2035.014 kb on - strand, within ABZR87_RS09575at 2035.082 kb on + strand, within ABZR87_RS09575at 2035.082 kb on + strand, within ABZR87_RS09575at 2035.082 kb on + strand, within ABZR87_RS09575at 2035.083 kb on - strand, within ABZR87_RS09575at 2035.083 kb on - strand, within ABZR87_RS09575at 2035.112 kb on + strandat 2035.121 kb on + strandat 2035.263 kb on + strandat 2035.264 kb on - strandat 2035.264 kb on - strandat 2035.338 kb on - strand, within ABZR87_RS09580at 2035.416 kb on + strand, within ABZR87_RS09580at 2035.416 kb on + strand, within ABZR87_RS09580at 2035.434 kb on + strand, within ABZR87_RS09580at 2035.434 kb on + strand, within ABZR87_RS09580at 2035.435 kb on - strand, within ABZR87_RS09580at 2035.435 kb on - strand, within ABZR87_RS09580at 2035.588 kb on - strand, within ABZR87_RS09580at 2035.588 kb on - strand, within ABZR87_RS09580at 2035.588 kb on - strand, within ABZR87_RS09580at 2035.669 kb on + strandat 2035.669 kb on + strandat 2035.670 kb on - strandat 2035.670 kb on - strandat 2035.670 kb on - strandat 2035.670 kb on - strandat 2035.675 kb on + strandat 2035.675 kb on + strandat 2035.676 kb on - strandat 2035.721 kb on + strandat 2035.722 kb on - strandat 2035.722 kb on - strandat 2035.722 kb on - strandat 2035.774 kb on + strandat 2035.774 kb on + strandat 2035.774 kb on + strandat 2035.775 kb on - strandat 2035.837 kb on + strandat 2035.867 kb on + strandat 2035.867 kb on + strandat 2035.867 kb on + strandat 2035.868 kb on - strandat 2035.868 kb on - strandat 2035.951 kb on + strand, within ABZR87_RS09585at 2036.007 kb on - strand, within ABZR87_RS09585at 2036.096 kb on + strandat 2036.096 kb on + strandat 2036.096 kb on + strandat 2036.097 kb on - strandat 2036.107 kb on + strandat 2036.107 kb on + strandat 2036.107 kb on + strandat 2036.107 kb on + strandat 2036.108 kb on - strandat 2036.108 kb on - strandat 2036.559 kb on + strandat 2036.559 kb on + strandat 2036.559 kb on + strandat 2036.559 kb on + strandat 2036.559 kb on + strandat 2036.559 kb on + strandat 2036.560 kb on - strandat 2036.560 kb on - strandat 2036.560 kb on - strandat 2036.560 kb on - strandat 2036.560 kb on - strandat 2036.560 kb on - strandat 2036.654 kb on + strandat 2036.654 kb on + strandat 2036.654 kb on + strandat 2036.654 kb on + strandat 2036.654 kb on + strandat 2036.655 kb on - strandat 2036.655 kb on - strandat 2036.655 kb on - strandat 2036.655 kb on - strandat 2036.655 kb on - strandat 2036.655 kb on - strandat 2036.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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2,034,330 - ABZR87_RS09575 0.21 -3.0
2,034,357 - ABZR87_RS09575 0.23 -3.6
2,034,357 - ABZR87_RS09575 0.23 -0.3
2,034,357 - ABZR87_RS09575 0.23 -0.2
2,034,357 - ABZR87_RS09575 0.23 -0.8
2,034,383 + ABZR87_RS09575 0.26 -2.6
2,034,383 + ABZR87_RS09575 0.26 +0.6
2,034,383 + ABZR87_RS09575 0.26 -0.4
2,034,383 + ABZR87_RS09575 0.26 +1.6
2,034,383 + ABZR87_RS09575 0.26 +0.3
2,034,384 - ABZR87_RS09575 0.26 +0.4
2,034,384 - ABZR87_RS09575 0.26 +0.4
2,034,384 - ABZR87_RS09575 0.26 -0.8
2,034,384 - ABZR87_RS09575 0.26 +1.3
2,034,479 + ABZR87_RS09575 0.34 +0.2
2,034,480 - ABZR87_RS09575 0.34 -3.1
2,034,480 - ABZR87_RS09575 0.34 -2.2
2,034,480 - ABZR87_RS09575 0.34 +1.6
2,034,507 + ABZR87_RS09575 0.37 -4.2
2,034,521 + ABZR87_RS09575 0.38 +1.7
2,034,521 + ABZR87_RS09575 0.38 -0.4
2,034,522 - ABZR87_RS09575 0.38 +1.6
2,034,522 - ABZR87_RS09575 0.38 -1.6
2,034,881 + ABZR87_RS09575 0.70 +0.7
2,034,882 + ABZR87_RS09575 0.70 -0.6
2,034,882 - ABZR87_RS09575 0.70 +0.3
2,034,890 + ABZR87_RS09575 0.71 -2.8
2,034,891 - ABZR87_RS09575 0.71 -0.8
2,034,891 - ABZR87_RS09575 0.71 -1.8
2,034,891 - ABZR87_RS09575 0.71 -1.8
2,034,891 - ABZR87_RS09575 0.71 +1.4
2,034,891 - ABZR87_RS09575 0.71 +0.8
2,035,013 + ABZR87_RS09575 0.82 -2.5
2,035,014 - ABZR87_RS09575 0.82 +0.8
2,035,014 - ABZR87_RS09575 0.82 +0.6
2,035,014 - ABZR87_RS09575 0.82 -1.5
2,035,082 + ABZR87_RS09575 0.88 +1.7
2,035,082 + ABZR87_RS09575 0.88 +0.2
2,035,082 + ABZR87_RS09575 0.88 +0.9
2,035,083 - ABZR87_RS09575 0.88 -2.0
2,035,083 - ABZR87_RS09575 0.88 -0.2
2,035,112 + +0.6
2,035,121 + +2.3
2,035,263 + -2.9
2,035,264 - -1.0
2,035,264 - -0.7
2,035,338 - ABZR87_RS09580 0.26 +0.6
2,035,416 + ABZR87_RS09580 0.43 -3.5
2,035,416 + ABZR87_RS09580 0.43 -3.4
2,035,434 + ABZR87_RS09580 0.47 -4.0
2,035,434 + ABZR87_RS09580 0.47 +1.3
2,035,435 - ABZR87_RS09580 0.47 -3.0
2,035,435 - ABZR87_RS09580 0.47 -3.3
2,035,588 - ABZR87_RS09580 0.81 -0.6
2,035,588 - ABZR87_RS09580 0.81 -0.4
2,035,588 - ABZR87_RS09580 0.81 -1.0
2,035,669 + -3.7
2,035,669 + -2.0
2,035,670 - -1.8
2,035,670 - -0.4
2,035,670 - +0.9
2,035,670 - -2.5
2,035,675 + -2.4
2,035,675 + +0.8
2,035,676 - +0.7
2,035,721 + -0.7
2,035,722 - +1.0
2,035,722 - +0.8
2,035,722 - +1.9
2,035,774 + -0.5
2,035,774 + +0.6
2,035,774 + +2.4
2,035,775 - +1.8
2,035,837 + -1.6
2,035,867 + +0.6
2,035,867 + +2.0
2,035,867 + +0.7
2,035,868 - +0.2
2,035,868 - +0.3
2,035,951 + ABZR87_RS09585 0.49 +1.8
2,036,007 - ABZR87_RS09585 0.81 +1.2
2,036,096 + +1.1
2,036,096 + -1.3
2,036,096 + +1.5
2,036,097 - +0.4
2,036,107 + +4.6
2,036,107 + +2.2
2,036,107 + +2.8
2,036,107 + -0.2
2,036,108 - +1.2
2,036,108 - -1.0
2,036,559 + +1.1
2,036,559 + +0.5
2,036,559 + -0.2
2,036,559 + +0.6
2,036,559 + -2.9
2,036,559 + +0.3
2,036,560 - -0.8
2,036,560 - +1.4
2,036,560 - +0.5
2,036,560 - -0.3
2,036,560 - -0.7
2,036,560 - -2.0
2,036,654 + +0.0
2,036,654 + -3.4
2,036,654 + -2.8
2,036,654 + -0.3
2,036,654 + -3.9
2,036,655 - -3.2
2,036,655 - +0.9
2,036,655 - +2.9
2,036,655 - +0.6
2,036,655 - -1.4
2,036,655 - -0.3
2,036,655 - -0.5

Or see this region's nucleotide sequence