Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08660

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS08650 and ABZR87_RS08655 are separated by 12 nucleotidesABZR87_RS08655 and ABZR87_RS08660 are separated by 3 nucleotidesABZR87_RS08660 and ABZR87_RS08665 are separated by 33 nucleotidesABZR87_RS08665 and ABZR87_RS08670 overlap by 14 nucleotides ABZR87_RS08650: ABZR87_RS08650 - dTDP-4-dehydrorhamnose reductase, at 1,838,667 to 1,839,584 _RS08650 ABZR87_RS08655: ABZR87_RS08655 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,839,597 to 1,840,469 _RS08655 ABZR87_RS08660: ABZR87_RS08660 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,840,473 to 1,841,021 _RS08660 ABZR87_RS08665: ABZR87_RS08665 - GNAT family N-acetyltransferase, at 1,841,055 to 1,841,792 _RS08665 ABZR87_RS08670: ABZR87_RS08670 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,841,779 to 1,842,900 _RS08670 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1839.524 kb on + strandat 1839.524 kb on + strandat 1839.532 kb on + strandat 1839.532 kb on + strandat 1839.533 kb on - strandat 1839.596 kb on + strandat 1839.596 kb on + strandat 1839.597 kb on - strandat 1839.597 kb on - strandat 1839.597 kb on - strandat 1839.612 kb on - strandat 1839.651 kb on - strandat 1839.702 kb on + strand, within ABZR87_RS08655at 1839.702 kb on + strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.703 kb on - strand, within ABZR87_RS08655at 1839.706 kb on - strand, within ABZR87_RS08655at 1839.736 kb on + strand, within ABZR87_RS08655at 1839.743 kb on + strand, within ABZR87_RS08655at 1839.744 kb on - strand, within ABZR87_RS08655at 1839.759 kb on - strand, within ABZR87_RS08655at 1839.771 kb on - strand, within ABZR87_RS08655at 1839.816 kb on - strand, within ABZR87_RS08655at 1839.828 kb on + strand, within ABZR87_RS08655at 1839.829 kb on - strand, within ABZR87_RS08655at 1839.829 kb on - strand, within ABZR87_RS08655at 1839.829 kb on - strand, within ABZR87_RS08655at 1839.872 kb on + strand, within ABZR87_RS08655at 1839.926 kb on + strand, within ABZR87_RS08655at 1840.002 kb on + strand, within ABZR87_RS08655at 1840.002 kb on + strand, within ABZR87_RS08655at 1840.068 kb on - strand, within ABZR87_RS08655at 1840.068 kb on - strand, within ABZR87_RS08655at 1840.120 kb on - strand, within ABZR87_RS08655at 1840.380 kb on - strand, within ABZR87_RS08655at 1840.382 kb on + strandat 1840.431 kb on + strandat 1840.504 kb on + strandat 1840.505 kb on - strandat 1840.505 kb on - strandat 1840.561 kb on - strand, within ABZR87_RS08660at 1840.581 kb on - strand, within ABZR87_RS08660at 1840.600 kb on + strand, within ABZR87_RS08660at 1840.622 kb on + strand, within ABZR87_RS08660at 1840.623 kb on - strand, within ABZR87_RS08660at 1840.720 kb on + strand, within ABZR87_RS08660at 1840.721 kb on - strand, within ABZR87_RS08660at 1840.721 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.725 kb on - strand, within ABZR87_RS08660at 1840.777 kb on + strand, within ABZR87_RS08660at 1840.840 kb on + strand, within ABZR87_RS08660at 1840.841 kb on - strand, within ABZR87_RS08660at 1840.841 kb on - strand, within ABZR87_RS08660at 1840.864 kb on - strand, within ABZR87_RS08660at 1840.878 kb on + strand, within ABZR87_RS08660at 1840.879 kb on - strand, within ABZR87_RS08660at 1840.879 kb on - strand, within ABZR87_RS08660at 1840.880 kb on - strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.881 kb on + strand, within ABZR87_RS08660at 1840.882 kb on - strand, within ABZR87_RS08660at 1840.882 kb on - strand, within ABZR87_RS08660at 1840.904 kb on + strand, within ABZR87_RS08660at 1840.996 kb on + strandat 1840.997 kb on - strandat 1841.019 kb on + strandat 1841.019 kb on + strandat 1841.020 kb on - strandat 1841.044 kb on + strandat 1841.065 kb on - strandat 1841.065 kb on - strandat 1841.068 kb on + strandat 1841.168 kb on + strand, within ABZR87_RS08665at 1841.168 kb on + strand, within ABZR87_RS08665at 1841.169 kb on - strand, within ABZR87_RS08665at 1841.234 kb on + strand, within ABZR87_RS08665at 1841.234 kb on + strand, within ABZR87_RS08665at 1841.235 kb on - strand, within ABZR87_RS08665at 1841.235 kb on - strand, within ABZR87_RS08665at 1841.255 kb on + strand, within ABZR87_RS08665at 1841.255 kb on + strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.256 kb on - strand, within ABZR87_RS08665at 1841.265 kb on + strand, within ABZR87_RS08665at 1841.265 kb on + strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.266 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.285 kb on - strand, within ABZR87_RS08665at 1841.292 kb on + strand, within ABZR87_RS08665at 1841.389 kb on - strand, within ABZR87_RS08665at 1841.445 kb on + strand, within ABZR87_RS08665at 1841.446 kb on - strand, within ABZR87_RS08665at 1841.617 kb on - strand, within ABZR87_RS08665at 1841.660 kb on + strand, within ABZR87_RS08665at 1841.693 kb on + strand, within ABZR87_RS08665at 1841.705 kb on - strand, within ABZR87_RS08665at 1841.705 kb on - strand, within ABZR87_RS08665at 1841.755 kb on - strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.824 kb on + strandat 1841.825 kb on - strandat 1841.855 kb on + strandat 1841.856 kb on - strandat 1841.919 kb on + strand, within ABZR87_RS08670at 1841.981 kb on + strand, within ABZR87_RS08670at 1842.001 kb on - strand, within ABZR87_RS08670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
1,839,524 + -2.0
1,839,524 + -2.9
1,839,532 + -3.3
1,839,532 + -4.3
1,839,533 - -2.4
1,839,596 + -1.0
1,839,596 + -2.0
1,839,597 - -0.4
1,839,597 - -1.7
1,839,597 - -0.4
1,839,612 - -1.7
1,839,651 - -1.0
1,839,702 + ABZR87_RS08655 0.12 -0.4
1,839,702 + ABZR87_RS08655 0.12 -1.4
1,839,703 - ABZR87_RS08655 0.12 -0.4
1,839,703 - ABZR87_RS08655 0.12 +0.6
1,839,703 - ABZR87_RS08655 0.12 -2.0
1,839,703 - ABZR87_RS08655 0.12 -0.4
1,839,703 - ABZR87_RS08655 0.12 -2.6
1,839,703 - ABZR87_RS08655 0.12 -1.7
1,839,703 - ABZR87_RS08655 0.12 -1.0
1,839,706 - ABZR87_RS08655 0.12 -2.6
1,839,736 + ABZR87_RS08655 0.16 -0.4
1,839,743 + ABZR87_RS08655 0.17 -2.0
1,839,744 - ABZR87_RS08655 0.17 -2.0
1,839,759 - ABZR87_RS08655 0.19 -3.4
1,839,771 - ABZR87_RS08655 0.20 +3.1
1,839,816 - ABZR87_RS08655 0.25 -2.6
1,839,828 + ABZR87_RS08655 0.26 +0.6
1,839,829 - ABZR87_RS08655 0.27 -0.4
1,839,829 - ABZR87_RS08655 0.27 -2.4
1,839,829 - ABZR87_RS08655 0.27 -2.0
1,839,872 + ABZR87_RS08655 0.32 -2.0
1,839,926 + ABZR87_RS08655 0.38 -1.7
1,840,002 + ABZR87_RS08655 0.46 -2.0
1,840,002 + ABZR87_RS08655 0.46 -1.4
1,840,068 - ABZR87_RS08655 0.54 -1.0
1,840,068 - ABZR87_RS08655 0.54 +0.6
1,840,120 - ABZR87_RS08655 0.60 -2.0
1,840,380 - ABZR87_RS08655 0.90 -1.0
1,840,382 + -0.4
1,840,431 + -2.0
1,840,504 + -3.1
1,840,505 - -2.6
1,840,505 - -2.0
1,840,561 - ABZR87_RS08660 0.16 -2.4
1,840,581 - ABZR87_RS08660 0.20 -1.0
1,840,600 + ABZR87_RS08660 0.23 -0.4
1,840,622 + ABZR87_RS08660 0.27 -2.7
1,840,623 - ABZR87_RS08660 0.27 -2.0
1,840,720 + ABZR87_RS08660 0.45 -3.7
1,840,721 - ABZR87_RS08660 0.45 -2.9
1,840,721 - ABZR87_RS08660 0.45 -4.1
1,840,725 - ABZR87_RS08660 0.46 -1.0
1,840,725 - ABZR87_RS08660 0.46 -2.2
1,840,725 - ABZR87_RS08660 0.46 -3.0
1,840,725 - ABZR87_RS08660 0.46 -3.2
1,840,777 + ABZR87_RS08660 0.55 -1.7
1,840,840 + ABZR87_RS08660 0.67 -3.3
1,840,841 - ABZR87_RS08660 0.67 -1.0
1,840,841 - ABZR87_RS08660 0.67 -0.4
1,840,864 - ABZR87_RS08660 0.71 -2.2
1,840,878 + ABZR87_RS08660 0.74 -3.6
1,840,879 - ABZR87_RS08660 0.74 -2.6
1,840,879 - ABZR87_RS08660 0.74 -2.6
1,840,880 - ABZR87_RS08660 0.74 -3.9
1,840,881 + ABZR87_RS08660 0.74 -3.1
1,840,881 + ABZR87_RS08660 0.74 -1.7
1,840,881 + ABZR87_RS08660 0.74 -2.4
1,840,881 + ABZR87_RS08660 0.74 -2.6
1,840,881 + ABZR87_RS08660 0.74 -3.5
1,840,882 - ABZR87_RS08660 0.74 -2.4
1,840,882 - ABZR87_RS08660 0.74 -1.0
1,840,904 + ABZR87_RS08660 0.79 -1.7
1,840,996 + -3.7
1,840,997 - -2.6
1,841,019 + -0.9
1,841,019 + -3.2
1,841,020 - -2.0
1,841,044 + -0.6
1,841,065 - -2.7
1,841,065 - +0.6
1,841,068 + -1.7
1,841,168 + ABZR87_RS08665 0.15 -2.6
1,841,168 + ABZR87_RS08665 0.15 -4.1
1,841,169 - ABZR87_RS08665 0.15 -2.0
1,841,234 + ABZR87_RS08665 0.24 -2.0
1,841,234 + ABZR87_RS08665 0.24 -1.0
1,841,235 - ABZR87_RS08665 0.24 -3.8
1,841,235 - ABZR87_RS08665 0.24 -1.7
1,841,255 + ABZR87_RS08665 0.27 -1.7
1,841,255 + ABZR87_RS08665 0.27 -0.4
1,841,256 - ABZR87_RS08665 0.27 -2.6
1,841,256 - ABZR87_RS08665 0.27 -0.4
1,841,256 - ABZR87_RS08665 0.27 +0.6
1,841,256 - ABZR87_RS08665 0.27 -1.7
1,841,265 + ABZR87_RS08665 0.28 -3.8
1,841,265 + ABZR87_RS08665 0.28 -2.6
1,841,266 - ABZR87_RS08665 0.29 +0.6
1,841,266 - ABZR87_RS08665 0.29 -2.2
1,841,266 - ABZR87_RS08665 0.29 -0.4
1,841,266 - ABZR87_RS08665 0.29 -2.0
1,841,266 - ABZR87_RS08665 0.29 -1.4
1,841,266 - ABZR87_RS08665 0.29 -0.4
1,841,285 - ABZR87_RS08665 0.31 -2.2
1,841,285 - ABZR87_RS08665 0.31 -1.7
1,841,285 - ABZR87_RS08665 0.31 -2.7
1,841,285 - ABZR87_RS08665 0.31 -0.4
1,841,292 + ABZR87_RS08665 0.32 -3.7
1,841,389 - ABZR87_RS08665 0.45 -3.1
1,841,445 + ABZR87_RS08665 0.53 -1.7
1,841,446 - ABZR87_RS08665 0.53 -1.0
1,841,617 - ABZR87_RS08665 0.76 -1.0
1,841,660 + ABZR87_RS08665 0.82 +1.6
1,841,693 + ABZR87_RS08665 0.86 +1.7
1,841,705 - ABZR87_RS08665 0.88 -2.7
1,841,705 - ABZR87_RS08665 0.88 -2.0
1,841,755 - -1.0
1,841,793 + -4.2
1,841,793 + +0.6
1,841,793 + +0.6
1,841,793 + +0.6
1,841,824 + -3.4
1,841,825 - -1.4
1,841,855 + -1.7
1,841,856 - -2.9
1,841,919 + ABZR87_RS08670 0.12 -2.0
1,841,981 + ABZR87_RS08670 0.18 -1.0
1,842,001 - ABZR87_RS08670 0.20 -2.0

Or see this region's nucleotide sequence