Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05860

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05855 and ABZR87_RS05860 are separated by 4 nucleotidesABZR87_RS05860 and ABZR87_RS05865 are separated by 19 nucleotides ABZR87_RS05855: ABZR87_RS05855 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,248,631 to 1,250,103 _RS05855 ABZR87_RS05860: ABZR87_RS05860 - homoserine kinase, at 1,250,108 to 1,251,103 _RS05860 ABZR87_RS05865: ABZR87_RS05865 - threonine synthase, at 1,251,123 to 1,252,535 _RS05865 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.198 kb on + strand, within ABZR87_RS05855at 1249.199 kb on - strand, within ABZR87_RS05855at 1249.199 kb on - strand, within ABZR87_RS05855at 1249.202 kb on + strand, within ABZR87_RS05855at 1249.202 kb on + strand, within ABZR87_RS05855at 1249.202 kb on + strand, within ABZR87_RS05855at 1249.202 kb on + strand, within ABZR87_RS05855at 1249.203 kb on - strand, within ABZR87_RS05855at 1249.203 kb on - strand, within ABZR87_RS05855at 1249.203 kb on - strand, within ABZR87_RS05855at 1249.220 kb on - strand, within ABZR87_RS05855at 1249.220 kb on - strand, within ABZR87_RS05855at 1249.302 kb on + strand, within ABZR87_RS05855at 1249.302 kb on + strand, within ABZR87_RS05855at 1249.302 kb on + strand, within ABZR87_RS05855at 1249.303 kb on - strand, within ABZR87_RS05855at 1249.303 kb on - strand, within ABZR87_RS05855at 1249.303 kb on - strand, within ABZR87_RS05855at 1249.371 kb on - strand, within ABZR87_RS05855at 1249.371 kb on - strand, within ABZR87_RS05855at 1249.411 kb on + strand, within ABZR87_RS05855at 1249.718 kb on + strand, within ABZR87_RS05855at 1249.718 kb on + strand, within ABZR87_RS05855at 1249.719 kb on - strand, within ABZR87_RS05855at 1249.754 kb on + strand, within ABZR87_RS05855at 1249.754 kb on + strand, within ABZR87_RS05855at 1249.754 kb on + strand, within ABZR87_RS05855at 1249.754 kb on + strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.755 kb on - strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.766 kb on + strand, within ABZR87_RS05855at 1249.767 kb on - strand, within ABZR87_RS05855at 1249.767 kb on - strand, within ABZR87_RS05855at 1249.767 kb on - strand, within ABZR87_RS05855at 1249.767 kb on - strand, within ABZR87_RS05855at 1249.767 kb on - strand, within ABZR87_RS05855at 1249.801 kb on - strand, within ABZR87_RS05855at 1249.810 kb on + strand, within ABZR87_RS05855at 1249.811 kb on - strand, within ABZR87_RS05855at 1249.811 kb on - strand, within ABZR87_RS05855at 1249.811 kb on - strand, within ABZR87_RS05855at 1249.811 kb on - strand, within ABZR87_RS05855at 1249.859 kb on + strand, within ABZR87_RS05855at 1249.860 kb on - strand, within ABZR87_RS05855at 1249.860 kb on - strand, within ABZR87_RS05855at 1249.899 kb on + strand, within ABZR87_RS05855at 1249.899 kb on + strand, within ABZR87_RS05855at 1249.900 kb on - strand, within ABZR87_RS05855at 1249.900 kb on - strand, within ABZR87_RS05855at 1250.062 kb on - strandat 1250.091 kb on - strandat 1250.091 kb on - strandat 1250.091 kb on - strandat 1250.195 kb on + strandat 1250.195 kb on + strandat 1250.195 kb on + strandat 1250.195 kb on + strandat 1250.195 kb on + strandat 1250.195 kb on + strandat 1250.196 kb on - strandat 1250.196 kb on - strandat 1250.196 kb on - strandat 1250.228 kb on + strand, within ABZR87_RS05860at 1250.228 kb on + strand, within ABZR87_RS05860at 1250.228 kb on + strand, within ABZR87_RS05860at 1250.228 kb on + strand, within ABZR87_RS05860at 1250.319 kb on + strand, within ABZR87_RS05860at 1250.319 kb on + strand, within ABZR87_RS05860at 1250.319 kb on + strand, within ABZR87_RS05860at 1250.320 kb on - strand, within ABZR87_RS05860at 1250.390 kb on + strand, within ABZR87_RS05860at 1250.402 kb on + strand, within ABZR87_RS05860at 1250.402 kb on + strand, within ABZR87_RS05860at 1250.402 kb on + strand, within ABZR87_RS05860at 1250.402 kb on + strand, within ABZR87_RS05860at 1250.403 kb on - strand, within ABZR87_RS05860at 1250.403 kb on - strand, within ABZR87_RS05860at 1250.403 kb on - strand, within ABZR87_RS05860at 1250.437 kb on - strand, within ABZR87_RS05860at 1250.437 kb on - strand, within ABZR87_RS05860at 1250.488 kb on + strand, within ABZR87_RS05860at 1250.488 kb on + strand, within ABZR87_RS05860at 1250.488 kb on + strand, within ABZR87_RS05860at 1250.488 kb on + strand, within ABZR87_RS05860at 1250.488 kb on + strand, within ABZR87_RS05860at 1250.489 kb on - strand, within ABZR87_RS05860at 1250.559 kb on + strand, within ABZR87_RS05860at 1250.674 kb on - strand, within ABZR87_RS05860at 1250.891 kb on + strand, within ABZR87_RS05860at 1250.892 kb on - strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.903 kb on + strand, within ABZR87_RS05860at 1250.904 kb on - strand, within ABZR87_RS05860at 1250.904 kb on - strand, within ABZR87_RS05860at 1250.904 kb on - strand, within ABZR87_RS05860at 1250.913 kb on + strand, within ABZR87_RS05860at 1250.913 kb on + strand, within ABZR87_RS05860at 1250.988 kb on + strand, within ABZR87_RS05860at 1250.988 kb on + strand, within ABZR87_RS05860at 1250.988 kb on + strand, within ABZR87_RS05860at 1250.989 kb on - strand, within ABZR87_RS05860at 1250.989 kb on - strand, within ABZR87_RS05860at 1250.989 kb on - strand, within ABZR87_RS05860at 1251.014 kb on + strandat 1251.014 kb on + strandat 1251.015 kb on - strandat 1251.091 kb on + strandat 1251.091 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.148 kb on + strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.149 kb on - strandat 1251.392 kb on + strand, within ABZR87_RS05865at 1251.392 kb on + strand, within ABZR87_RS05865at 1251.393 kb on - strand, within ABZR87_RS05865at 1251.393 kb on - strand, within ABZR87_RS05865at 1251.403 kb on - strand, within ABZR87_RS05865at 1251.448 kb on + strand, within ABZR87_RS05865at 1251.448 kb on + strand, within ABZR87_RS05865at 1251.449 kb on - strand, within ABZR87_RS05865at 1251.449 kb on - strand, within ABZR87_RS05865at 1251.449 kb on - strand, within ABZR87_RS05865at 1251.594 kb on - strand, within ABZR87_RS05865at 1251.594 kb on - strand, within ABZR87_RS05865at 1251.594 kb on - strand, within ABZR87_RS05865at 1251.594 kb on - strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.614 kb on + strand, within ABZR87_RS05865at 1251.615 kb on - strand, within ABZR87_RS05865at 1251.615 kb on - strand, within ABZR87_RS05865at 1251.615 kb on - strand, within ABZR87_RS05865at 1251.615 kb on - strand, within ABZR87_RS05865at 1251.615 kb on - strand, within ABZR87_RS05865at 1251.699 kb on + strand, within ABZR87_RS05865at 1251.699 kb on + strand, within ABZR87_RS05865at 1251.797 kb on + strand, within ABZR87_RS05865at 1251.798 kb on - strand, within ABZR87_RS05865at 1251.832 kb on + strand, within ABZR87_RS05865at 1251.832 kb on + strand, within ABZR87_RS05865at 1251.833 kb on - strand, within ABZR87_RS05865at 1251.835 kb on + strand, within ABZR87_RS05865at 1251.836 kb on - strand, within ABZR87_RS05865at 1251.836 kb on - strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.892 kb on + strand, within ABZR87_RS05865at 1251.893 kb on - strand, within ABZR87_RS05865at 1252.084 kb on + strand, within ABZR87_RS05865at 1252.084 kb on + strand, within ABZR87_RS05865at 1252.084 kb on + strand, within ABZR87_RS05865at 1252.084 kb on + strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865at 1252.085 kb on - strand, within ABZR87_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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1,249,198 + ABZR87_RS05855 0.38 +0.8
1,249,198 + ABZR87_RS05855 0.38 +0.6
1,249,198 + ABZR87_RS05855 0.38 -0.8
1,249,198 + ABZR87_RS05855 0.38 -0.6
1,249,198 + ABZR87_RS05855 0.38 +1.2
1,249,198 + ABZR87_RS05855 0.38 +2.3
1,249,199 - ABZR87_RS05855 0.39 +0.7
1,249,199 - ABZR87_RS05855 0.39 +1.4
1,249,202 + ABZR87_RS05855 0.39 +1.5
1,249,202 + ABZR87_RS05855 0.39 -0.5
1,249,202 + ABZR87_RS05855 0.39 -0.3
1,249,202 + ABZR87_RS05855 0.39 +1.4
1,249,203 - ABZR87_RS05855 0.39 -3.8
1,249,203 - ABZR87_RS05855 0.39 -3.5
1,249,203 - ABZR87_RS05855 0.39 +2.0
1,249,220 - ABZR87_RS05855 0.40 +1.4
1,249,220 - ABZR87_RS05855 0.40 -0.6
1,249,302 + ABZR87_RS05855 0.46 -0.3
1,249,302 + ABZR87_RS05855 0.46 +1.5
1,249,302 + ABZR87_RS05855 0.46 +4.6
1,249,303 - ABZR87_RS05855 0.46 +1.8
1,249,303 - ABZR87_RS05855 0.46 +0.5
1,249,303 - ABZR87_RS05855 0.46 -0.8
1,249,371 - ABZR87_RS05855 0.50 +3.9
1,249,371 - ABZR87_RS05855 0.50 -0.3
1,249,411 + ABZR87_RS05855 0.53 +1.1
1,249,718 + ABZR87_RS05855 0.74 -1.7
1,249,718 + ABZR87_RS05855 0.74 -1.8
1,249,719 - ABZR87_RS05855 0.74 +0.9
1,249,754 + ABZR87_RS05855 0.76 -0.9
1,249,754 + ABZR87_RS05855 0.76 +1.1
1,249,754 + ABZR87_RS05855 0.76 +0.6
1,249,754 + ABZR87_RS05855 0.76 +0.2
1,249,755 - ABZR87_RS05855 0.76 +1.4
1,249,755 - ABZR87_RS05855 0.76 +0.1
1,249,755 - ABZR87_RS05855 0.76 -2.0
1,249,755 - ABZR87_RS05855 0.76 -2.8
1,249,755 - ABZR87_RS05855 0.76 -2.4
1,249,755 - ABZR87_RS05855 0.76 -2.0
1,249,766 + ABZR87_RS05855 0.77 +1.5
1,249,766 + ABZR87_RS05855 0.77 -0.3
1,249,766 + ABZR87_RS05855 0.77 +0.6
1,249,766 + ABZR87_RS05855 0.77 +1.1
1,249,766 + ABZR87_RS05855 0.77 -2.5
1,249,766 + ABZR87_RS05855 0.77 -2.0
1,249,766 + ABZR87_RS05855 0.77 -3.2
1,249,767 - ABZR87_RS05855 0.77 +0.7
1,249,767 - ABZR87_RS05855 0.77 +0.5
1,249,767 - ABZR87_RS05855 0.77 +0.8
1,249,767 - ABZR87_RS05855 0.77 +0.7
1,249,767 - ABZR87_RS05855 0.77 +3.6
1,249,801 - ABZR87_RS05855 0.79 -2.0
1,249,810 + ABZR87_RS05855 0.80 +2.1
1,249,811 - ABZR87_RS05855 0.80 -0.2
1,249,811 - ABZR87_RS05855 0.80 -0.2
1,249,811 - ABZR87_RS05855 0.80 +0.5
1,249,811 - ABZR87_RS05855 0.80 +1.2
1,249,859 + ABZR87_RS05855 0.83 +1.0
1,249,860 - ABZR87_RS05855 0.83 -0.1
1,249,860 - ABZR87_RS05855 0.83 +0.5
1,249,899 + ABZR87_RS05855 0.86 -1.8
1,249,899 + ABZR87_RS05855 0.86 +0.9
1,249,900 - ABZR87_RS05855 0.86 -0.0
1,249,900 - ABZR87_RS05855 0.86 +1.3
1,250,062 - -0.2
1,250,091 - +0.8
1,250,091 - -4.0
1,250,091 - -2.9
1,250,195 + -2.2
1,250,195 + +2.0
1,250,195 + -0.2
1,250,195 + +1.2
1,250,195 + -1.2
1,250,195 + -2.5
1,250,196 - -3.7
1,250,196 - -1.2
1,250,196 - +0.8
1,250,228 + ABZR87_RS05860 0.12 +0.4
1,250,228 + ABZR87_RS05860 0.12 -0.4
1,250,228 + ABZR87_RS05860 0.12 +0.6
1,250,228 + ABZR87_RS05860 0.12 -1.9
1,250,319 + ABZR87_RS05860 0.21 +2.4
1,250,319 + ABZR87_RS05860 0.21 -3.8
1,250,319 + ABZR87_RS05860 0.21 -4.2
1,250,320 - ABZR87_RS05860 0.21 -0.2
1,250,390 + ABZR87_RS05860 0.28 +0.9
1,250,402 + ABZR87_RS05860 0.30 -0.8
1,250,402 + ABZR87_RS05860 0.30 +1.3
1,250,402 + ABZR87_RS05860 0.30 +0.9
1,250,402 + ABZR87_RS05860 0.30 +2.1
1,250,403 - ABZR87_RS05860 0.30 -2.7
1,250,403 - ABZR87_RS05860 0.30 +0.6
1,250,403 - ABZR87_RS05860 0.30 -3.8
1,250,437 - ABZR87_RS05860 0.33 -2.7
1,250,437 - ABZR87_RS05860 0.33 -2.2
1,250,488 + ABZR87_RS05860 0.38 -1.2
1,250,488 + ABZR87_RS05860 0.38 +2.0
1,250,488 + ABZR87_RS05860 0.38 -3.2
1,250,488 + ABZR87_RS05860 0.38 -1.1
1,250,488 + ABZR87_RS05860 0.38 +1.1
1,250,489 - ABZR87_RS05860 0.38 -3.6
1,250,559 + ABZR87_RS05860 0.45 -2.8
1,250,674 - ABZR87_RS05860 0.57 -0.5
1,250,891 + ABZR87_RS05860 0.79 +1.6
1,250,892 - ABZR87_RS05860 0.79 -3.4
1,250,903 + ABZR87_RS05860 0.80 -2.8
1,250,903 + ABZR87_RS05860 0.80 -0.2
1,250,903 + ABZR87_RS05860 0.80 -3.0
1,250,903 + ABZR87_RS05860 0.80 -3.0
1,250,903 + ABZR87_RS05860 0.80 +1.1
1,250,903 + ABZR87_RS05860 0.80 -0.3
1,250,903 + ABZR87_RS05860 0.80 -2.7
1,250,903 + ABZR87_RS05860 0.80 -2.5
1,250,904 - ABZR87_RS05860 0.80 +1.1
1,250,904 - ABZR87_RS05860 0.80 -0.7
1,250,904 - ABZR87_RS05860 0.80 +0.7
1,250,913 + ABZR87_RS05860 0.81 -2.5
1,250,913 + ABZR87_RS05860 0.81 -0.0
1,250,988 + ABZR87_RS05860 0.88 +0.1
1,250,988 + ABZR87_RS05860 0.88 +3.1
1,250,988 + ABZR87_RS05860 0.88 -1.8
1,250,989 - ABZR87_RS05860 0.88 -4.4
1,250,989 - ABZR87_RS05860 0.88 +1.2
1,250,989 - ABZR87_RS05860 0.88 -0.4
1,251,014 + -0.7
1,251,014 + +1.5
1,251,015 - -3.2
1,251,091 + +1.7
1,251,091 + +2.5
1,251,148 + +0.1
1,251,148 + -2.4
1,251,148 + +0.2
1,251,148 + -0.6
1,251,148 + -1.5
1,251,148 + +0.6
1,251,148 + +1.0
1,251,148 + +0.8
1,251,149 - +0.3
1,251,149 - +0.9
1,251,149 - -0.5
1,251,149 - -0.1
1,251,149 - +1.8
1,251,149 - +1.3
1,251,149 - +1.1
1,251,392 + ABZR87_RS05865 0.19 -2.8
1,251,392 + ABZR87_RS05865 0.19 +1.2
1,251,393 - ABZR87_RS05865 0.19 +1.5
1,251,393 - ABZR87_RS05865 0.19 +1.5
1,251,403 - ABZR87_RS05865 0.20 -0.2
1,251,448 + ABZR87_RS05865 0.23 +0.3
1,251,448 + ABZR87_RS05865 0.23 +0.6
1,251,449 - ABZR87_RS05865 0.23 -3.3
1,251,449 - ABZR87_RS05865 0.23 +1.8
1,251,449 - ABZR87_RS05865 0.23 -0.2
1,251,594 - ABZR87_RS05865 0.33 -2.7
1,251,594 - ABZR87_RS05865 0.33 -4.4
1,251,594 - ABZR87_RS05865 0.33 +0.4
1,251,594 - ABZR87_RS05865 0.33 +1.3
1,251,614 + ABZR87_RS05865 0.35 +1.3
1,251,614 + ABZR87_RS05865 0.35 -4.1
1,251,614 + ABZR87_RS05865 0.35 +1.6
1,251,614 + ABZR87_RS05865 0.35 -1.5
1,251,614 + ABZR87_RS05865 0.35 +2.4
1,251,614 + ABZR87_RS05865 0.35 -0.1
1,251,615 - ABZR87_RS05865 0.35 +3.2
1,251,615 - ABZR87_RS05865 0.35 +0.1
1,251,615 - ABZR87_RS05865 0.35 +0.4
1,251,615 - ABZR87_RS05865 0.35 +1.1
1,251,615 - ABZR87_RS05865 0.35 +1.4
1,251,699 + ABZR87_RS05865 0.41 +1.5
1,251,699 + ABZR87_RS05865 0.41 -0.8
1,251,797 + ABZR87_RS05865 0.48 -0.4
1,251,798 - ABZR87_RS05865 0.48 -0.8
1,251,832 + ABZR87_RS05865 0.50 -3.3
1,251,832 + ABZR87_RS05865 0.50 -0.9
1,251,833 - ABZR87_RS05865 0.50 +0.1
1,251,835 + ABZR87_RS05865 0.50 +2.6
1,251,836 - ABZR87_RS05865 0.50 -2.9
1,251,836 - ABZR87_RS05865 0.50 -4.1
1,251,892 + ABZR87_RS05865 0.54 -0.3
1,251,892 + ABZR87_RS05865 0.54 -0.6
1,251,892 + ABZR87_RS05865 0.54 -1.2
1,251,892 + ABZR87_RS05865 0.54 -1.5
1,251,892 + ABZR87_RS05865 0.54 -1.6
1,251,892 + ABZR87_RS05865 0.54 +0.8
1,251,892 + ABZR87_RS05865 0.54 +0.2
1,251,893 - ABZR87_RS05865 0.54 -3.3
1,252,084 + ABZR87_RS05865 0.68 -3.2
1,252,084 + ABZR87_RS05865 0.68 -2.7
1,252,084 + ABZR87_RS05865 0.68 -4.1
1,252,084 + ABZR87_RS05865 0.68 +0.6
1,252,085 - ABZR87_RS05865 0.68 +1.1
1,252,085 - ABZR87_RS05865 0.68 -2.4
1,252,085 - ABZR87_RS05865 0.68 +0.9
1,252,085 - ABZR87_RS05865 0.68 +0.8
1,252,085 - ABZR87_RS05865 0.68 +1.2
1,252,085 - ABZR87_RS05865 0.68 +1.5
1,252,085 - ABZR87_RS05865 0.68 -0.6
1,252,085 - ABZR87_RS05865 0.68 -2.2

Or see this region's nucleotide sequence