Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04215 and ABZR87_RS04220 are separated by 245 nucleotides ABZR87_RS04220 and ABZR87_RS04225 are separated by 68 nucleotides
ABZR87_RS04215: ABZR87_RS04215 - ABC transporter ATP-binding protein, at 880,526 to 881,296
_RS04215
ABZR87_RS04220: ABZR87_RS04220 - choline dehydrogenase, at 881,542 to 883,176
_RS04220
ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114
_RS04225
Position (kb) 881
882
883
884 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 880.561 kb on + strand at 880.562 kb on - strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.563 kb on + strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.564 kb on - strand at 880.603 kb on - strand, within ABZR87_RS04215 at 880.842 kb on + strand, within ABZR87_RS04215 at 880.956 kb on + strand, within ABZR87_RS04215 at 880.956 kb on + strand, within ABZR87_RS04215 at 880.957 kb on - strand, within ABZR87_RS04215 at 881.240 kb on - strand at 881.323 kb on + strand at 881.323 kb on + strand at 881.324 kb on - strand at 881.387 kb on + strand at 881.387 kb on + strand at 881.388 kb on - strand at 881.388 kb on - strand at 881.398 kb on + strand at 881.450 kb on + strand at 881.451 kb on - strand at 881.455 kb on - strand at 881.460 kb on + strand at 881.461 kb on - strand at 881.461 kb on - strand at 881.465 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.487 kb on - strand at 881.493 kb on - strand at 881.637 kb on + strand at 881.637 kb on + strand at 881.638 kb on - strand at 881.638 kb on - strand at 881.649 kb on + strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.650 kb on - strand at 881.846 kb on + strand, within ABZR87_RS04220 at 881.847 kb on - strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.861 kb on + strand, within ABZR87_RS04220 at 881.862 kb on - strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 881.948 kb on + strand, within ABZR87_RS04220 at 882.104 kb on + strand, within ABZR87_RS04220 at 882.105 kb on - strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.200 kb on + strand, within ABZR87_RS04220 at 882.201 kb on - strand, within ABZR87_RS04220 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.456 kb on - strand, within ABZR87_RS04220 at 882.476 kb on + strand, within ABZR87_RS04220 at 882.477 kb on - strand, within ABZR87_RS04220 at 882.477 kb on - strand, within ABZR87_RS04220 at 882.869 kb on + strand, within ABZR87_RS04220 at 882.870 kb on - strand, within ABZR87_RS04220 at 882.870 kb on - strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 883.022 kb on + strand at 883.022 kb on + strand at 883.022 kb on + strand at 883.022 kb on + strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.028 kb on + strand at 883.056 kb on - strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.166 kb on + strand at 883.166 kb on + strand at 883.167 kb on - strand at 883.167 kb on - strand at 883.167 kb on - strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.203 kb on + strand at 883.203 kb on + strand at 883.378 kb on + strand, within ABZR87_RS04225 at 883.378 kb on + strand, within ABZR87_RS04225 at 883.379 kb on - strand, within ABZR87_RS04225 at 883.381 kb on - strand, within ABZR87_RS04225 at 883.827 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 884.149 kb on + strand at 884.150 kb on - strand at 884.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 880,561 + -1.4 880,562 - +0.4 880,563 + +1.8 880,563 + +2.4 880,563 + +1.0 880,563 + -0.1 880,563 + +1.7 880,563 + -2.5 880,563 + -2.2 880,563 + -0.3 880,564 - -0.7 880,564 - +2.9 880,564 - -2.2 880,564 - +2.5 880,564 - -1.1 880,564 - +0.4 880,564 - -0.5 880,564 - -1.9 880,603 - ABZR87_RS04215 0.10 -2.8 880,842 + ABZR87_RS04215 0.41 -2.5 880,956 + ABZR87_RS04215 0.56 +1.5 880,956 + ABZR87_RS04215 0.56 -3.0 880,957 - ABZR87_RS04215 0.56 -3.6 881,240 - +1.8 881,323 + -0.1 881,323 + +0.5 881,324 - +1.1 881,387 + -3.9 881,387 + -0.0 881,388 - +0.0 881,388 - +1.9 881,398 + -1.1 881,450 + +1.9 881,451 - +0.3 881,455 - +1.5 881,460 + -1.2 881,461 - +0.9 881,461 - +1.2 881,465 - +1.1 881,487 - +2.2 881,487 - +1.1 881,487 - +2.0 881,487 - +2.0 881,487 - -0.2 881,487 - -0.4 881,487 - +2.8 881,493 - +0.1 881,637 + -0.7 881,637 + -2.5 881,638 - -0.1 881,638 - -3.1 881,649 + -1.4 881,650 - -3.3 881,650 - -3.2 881,650 - -3.7 881,650 - -3.3 881,846 + ABZR87_RS04220 0.19 -3.0 881,847 - ABZR87_RS04220 0.19 -3.2 881,861 + ABZR87_RS04220 0.20 -2.1 881,861 + ABZR87_RS04220 0.20 -0.3 881,861 + ABZR87_RS04220 0.20 -2.5 881,861 + ABZR87_RS04220 0.20 -1.9 881,861 + ABZR87_RS04220 0.20 +1.2 881,861 + ABZR87_RS04220 0.20 +0.3 881,861 + ABZR87_RS04220 0.20 -4.1 881,861 + ABZR87_RS04220 0.20 +0.1 881,862 - ABZR87_RS04220 0.20 -3.9 881,948 + ABZR87_RS04220 0.25 -2.9 881,948 + ABZR87_RS04220 0.25 -0.4 881,948 + ABZR87_RS04220 0.25 -3.9 881,948 + ABZR87_RS04220 0.25 -0.7 881,948 + ABZR87_RS04220 0.25 -2.9 881,948 + ABZR87_RS04220 0.25 -2.8 882,104 + ABZR87_RS04220 0.34 -3.8 882,105 - ABZR87_RS04220 0.34 -1.7 882,200 + ABZR87_RS04220 0.40 -3.8 882,200 + ABZR87_RS04220 0.40 -3.5 882,200 + ABZR87_RS04220 0.40 -0.2 882,201 - ABZR87_RS04220 0.40 -2.4 882,455 + ABZR87_RS04220 0.56 -1.1 882,455 + ABZR87_RS04220 0.56 -2.1 882,455 + ABZR87_RS04220 0.56 -0.1 882,456 - ABZR87_RS04220 0.56 -3.2 882,476 + ABZR87_RS04220 0.57 -3.5 882,477 - ABZR87_RS04220 0.57 -1.9 882,477 - ABZR87_RS04220 0.57 -2.3 882,869 + ABZR87_RS04220 0.81 -3.6 882,870 - ABZR87_RS04220 0.81 -1.1 882,870 - ABZR87_RS04220 0.81 -2.1 882,893 + ABZR87_RS04220 0.83 -2.5 882,893 + ABZR87_RS04220 0.83 -2.9 882,893 + ABZR87_RS04220 0.83 -2.7 882,893 + ABZR87_RS04220 0.83 -2.9 882,893 + ABZR87_RS04220 0.83 -0.7 882,894 - ABZR87_RS04220 0.83 -2.3 882,894 - ABZR87_RS04220 0.83 +1.1 882,894 - ABZR87_RS04220 0.83 -1.7 882,894 - ABZR87_RS04220 0.83 +0.6 882,894 - ABZR87_RS04220 0.83 +0.0 883,022 + +0.9 883,022 + -3.8 883,022 + -5.2 883,022 + -1.9 883,023 - -2.6 883,023 - +0.9 883,023 - +0.5 883,023 - -3.5 883,028 + -1.1 883,056 - -2.1 883,160 + -0.6 883,160 + -3.2 883,160 + -1.3 883,160 + -1.1 883,160 + -2.4 883,161 - -3.3 883,161 - -0.4 883,161 - -0.1 883,161 - +3.6 883,161 - -3.2 883,161 - -1.9 883,166 + -3.0 883,166 + -2.7 883,167 - +0.7 883,167 - -3.5 883,167 - -2.5 883,170 + -3.7 883,170 + -0.1 883,170 + -1.1 883,170 + -2.4 883,170 + -3.8 883,170 + -3.9 883,171 - -2.5 883,171 - -3.5 883,171 - -3.2 883,171 - +1.9 883,171 - -2.3 883,203 + +2.4 883,203 + -0.4 883,378 + ABZR87_RS04225 0.15 -2.4 883,378 + ABZR87_RS04225 0.15 +0.5 883,379 - ABZR87_RS04225 0.15 -2.5 883,381 - ABZR87_RS04225 0.16 -0.7 883,827 + ABZR87_RS04225 0.67 -0.8 883,831 + ABZR87_RS04225 0.67 -1.1 883,831 + ABZR87_RS04225 0.67 -2.0 883,831 + ABZR87_RS04225 0.67 +0.9 883,831 + ABZR87_RS04225 0.67 -0.8 883,831 + ABZR87_RS04225 0.67 -4.2 883,832 - ABZR87_RS04225 0.67 -2.1 883,832 - ABZR87_RS04225 0.67 -2.7 883,832 - ABZR87_RS04225 0.67 -1.0 883,832 - ABZR87_RS04225 0.67 -2.5 883,832 - ABZR87_RS04225 0.67 +0.7 884,149 + -0.1 884,150 - -0.2 884,150 - -0.4
Or see this region's nucleotide sequence