Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02875

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02870 and ABZR87_RS02875 are separated by 99 nucleotidesABZR87_RS02875 and ABZR87_RS02880 overlap by 4 nucleotides ABZR87_RS02870: ABZR87_RS02870 - MFS transporter, at 595,003 to 596,256 _RS02870 ABZR87_RS02875: ABZR87_RS02875 - LysR family transcriptional regulator, at 596,356 to 597,276 _RS02875 ABZR87_RS02880: ABZR87_RS02880 - DNA helicase RecQ, at 597,273 to 599,186 _RS02880 Position (kb) 596 597 598Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 595.594 kb on + strand, within ABZR87_RS02870at 595.594 kb on + strand, within ABZR87_RS02870at 595.595 kb on - strand, within ABZR87_RS02870at 595.622 kb on + strand, within ABZR87_RS02870at 595.622 kb on + strand, within ABZR87_RS02870at 595.623 kb on - strand, within ABZR87_RS02870at 595.623 kb on - strand, within ABZR87_RS02870at 595.643 kb on + strand, within ABZR87_RS02870at 595.730 kb on + strand, within ABZR87_RS02870at 595.730 kb on + strand, within ABZR87_RS02870at 595.731 kb on - strand, within ABZR87_RS02870at 595.731 kb on - strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.981 kb on + strand, within ABZR87_RS02870at 595.981 kb on + strand, within ABZR87_RS02870at 596.143 kb on - strandat 596.290 kb on + strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.312 kb on + strandat 596.313 kb on - strandat 596.317 kb on + strandat 596.332 kb on + strandat 596.332 kb on + strandat 596.333 kb on - strandat 596.343 kb on + strandat 596.343 kb on + strandat 596.355 kb on + strandat 596.355 kb on + strandat 596.355 kb on + strandat 596.356 kb on - strandat 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.867 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.939 kb on - strand, within ABZR87_RS02875at 596.950 kb on + strand, within ABZR87_RS02875at 596.951 kb on - strand, within ABZR87_RS02875at 597.082 kb on + strand, within ABZR87_RS02875at 597.082 kb on + strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.100 kb on - strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.275 kb on - strandat 597.430 kb on + strandat 597.430 kb on + strandat 597.430 kb on + strandat 597.430 kb on + strandat 597.430 kb on + strandat 597.431 kb on - strandat 597.431 kb on - strandat 597.431 kb on - strandat 597.431 kb on - strandat 597.431 kb on - strandat 597.431 kb on - strandat 597.705 kb on + strand, within ABZR87_RS02880at 597.705 kb on + strand, within ABZR87_RS02880at 597.705 kb on + strand, within ABZR87_RS02880at 597.705 kb on + strand, within ABZR87_RS02880at 597.706 kb on - strand, within ABZR87_RS02880at 597.706 kb on - strand, within ABZR87_RS02880at 597.862 kb on + strand, within ABZR87_RS02880at 597.863 kb on - strand, within ABZR87_RS02880at 597.929 kb on + strand, within ABZR87_RS02880at 597.929 kb on + strand, within ABZR87_RS02880at 597.930 kb on - strand, within ABZR87_RS02880at 597.930 kb on - strand, within ABZR87_RS02880at 597.930 kb on - strand, within ABZR87_RS02880at 597.930 kb on - strand, within ABZR87_RS02880at 597.967 kb on + strand, within ABZR87_RS02880at 597.968 kb on - strand, within ABZR87_RS02880at 597.968 kb on - strand, within ABZR87_RS02880at 598.042 kb on - strand, within ABZR87_RS02880at 598.115 kb on - strand, within ABZR87_RS02880at 598.171 kb on + strand, within ABZR87_RS02880at 598.171 kb on + strand, within ABZR87_RS02880at 598.172 kb on - strand, within ABZR87_RS02880at 598.172 kb on - strand, within ABZR87_RS02880at 598.172 kb on - strand, within ABZR87_RS02880at 598.172 kb on - strand, within ABZR87_RS02880at 598.174 kb on + strand, within ABZR87_RS02880at 598.174 kb on + strand, within ABZR87_RS02880at 598.174 kb on + strand, within ABZR87_RS02880at 598.175 kb on - strand, within ABZR87_RS02880at 598.175 kb on - strand, within ABZR87_RS02880at 598.175 kb on - strand, within ABZR87_RS02880

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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595,594 + ABZR87_RS02870 0.47 +0.5
595,594 + ABZR87_RS02870 0.47 -4.1
595,595 - ABZR87_RS02870 0.47 -1.1
595,622 + ABZR87_RS02870 0.49 +0.4
595,622 + ABZR87_RS02870 0.49 +1.8
595,623 - ABZR87_RS02870 0.49 -0.4
595,623 - ABZR87_RS02870 0.49 +0.3
595,643 + ABZR87_RS02870 0.51 +1.9
595,730 + ABZR87_RS02870 0.58 -3.3
595,730 + ABZR87_RS02870 0.58 +2.0
595,731 - ABZR87_RS02870 0.58 -3.2
595,731 - ABZR87_RS02870 0.58 +0.1
595,795 + ABZR87_RS02870 0.63 -0.6
595,795 + ABZR87_RS02870 0.63 +1.1
595,795 + ABZR87_RS02870 0.63 +2.2
595,795 + ABZR87_RS02870 0.63 +1.4
595,795 + ABZR87_RS02870 0.63 +0.7
595,796 - ABZR87_RS02870 0.63 -2.6
595,796 - ABZR87_RS02870 0.63 +2.5
595,796 - ABZR87_RS02870 0.63 +0.5
595,796 - ABZR87_RS02870 0.63 -0.5
595,796 - ABZR87_RS02870 0.63 +0.9
595,796 - ABZR87_RS02870 0.63 -0.1
595,796 - ABZR87_RS02870 0.63 +2.9
595,981 + ABZR87_RS02870 0.78 -2.8
595,981 + ABZR87_RS02870 0.78 -2.6
596,143 - +1.6
596,290 + +1.9
596,291 - -1.1
596,291 - +0.5
596,291 - -2.1
596,291 - -1.8
596,291 - -0.5
596,291 - -2.8
596,291 - -0.2
596,291 - -0.1
596,291 - +0.7
596,312 + +2.2
596,313 - +1.8
596,317 + +1.3
596,332 + +0.8
596,332 + +0.6
596,333 - +0.9
596,343 + +0.1
596,343 + -0.0
596,355 + +1.1
596,355 + +0.5
596,355 + -2.6
596,356 - -1.6
596,847 + ABZR87_RS02875 0.53 -0.3
596,847 + ABZR87_RS02875 0.53 +3.0
596,847 + ABZR87_RS02875 0.53 +1.3
596,847 + ABZR87_RS02875 0.53 -3.6
596,848 - ABZR87_RS02875 0.53 -4.2
596,848 - ABZR87_RS02875 0.53 +0.6
596,848 - ABZR87_RS02875 0.53 -3.6
596,848 - ABZR87_RS02875 0.53 +1.0
596,851 + ABZR87_RS02875 0.54 -2.2
596,851 + ABZR87_RS02875 0.54 -1.1
596,851 + ABZR87_RS02875 0.54 -0.3
596,852 - ABZR87_RS02875 0.54 +0.4
596,852 - ABZR87_RS02875 0.54 +0.8
596,852 - ABZR87_RS02875 0.54 +1.0
596,852 - ABZR87_RS02875 0.54 +0.7
596,867 - ABZR87_RS02875 0.55 +0.4
596,930 - ABZR87_RS02875 0.62 +0.4
596,930 - ABZR87_RS02875 0.62 +0.4
596,930 - ABZR87_RS02875 0.62 +1.3
596,938 + ABZR87_RS02875 0.63 -0.2
596,938 + ABZR87_RS02875 0.63 -2.2
596,938 + ABZR87_RS02875 0.63 -1.1
596,938 + ABZR87_RS02875 0.63 -0.9
596,939 - ABZR87_RS02875 0.63 -0.7
596,950 + ABZR87_RS02875 0.64 -1.1
596,951 - ABZR87_RS02875 0.65 +1.9
597,082 + ABZR87_RS02875 0.79 -0.1
597,082 + ABZR87_RS02875 0.79 -3.6
597,083 - ABZR87_RS02875 0.79 +0.5
597,083 - ABZR87_RS02875 0.79 +0.2
597,083 - ABZR87_RS02875 0.79 +0.1
597,100 - ABZR87_RS02875 0.81 +1.9
597,136 + ABZR87_RS02875 0.85 +0.9
597,136 + ABZR87_RS02875 0.85 -0.6
597,136 + ABZR87_RS02875 0.85 +0.4
597,136 + ABZR87_RS02875 0.85 -1.0
597,136 + ABZR87_RS02875 0.85 +1.6
597,136 + ABZR87_RS02875 0.85 +1.8
597,275 - -0.3
597,430 + -0.2
597,430 + +0.3
597,430 + +1.4
597,430 + +1.0
597,430 + -4.4
597,431 - -0.9
597,431 - +4.1
597,431 - -3.9
597,431 - +0.3
597,431 - +1.2
597,431 - -0.1
597,705 + ABZR87_RS02880 0.23 +0.7
597,705 + ABZR87_RS02880 0.23 +3.1
597,705 + ABZR87_RS02880 0.23 -3.0
597,705 + ABZR87_RS02880 0.23 +1.3
597,706 - ABZR87_RS02880 0.23 -3.4
597,706 - ABZR87_RS02880 0.23 +1.4
597,862 + ABZR87_RS02880 0.31 +0.8
597,863 - ABZR87_RS02880 0.31 +3.0
597,929 + ABZR87_RS02880 0.34 +0.9
597,929 + ABZR87_RS02880 0.34 +0.1
597,930 - ABZR87_RS02880 0.34 -2.1
597,930 - ABZR87_RS02880 0.34 -3.0
597,930 - ABZR87_RS02880 0.34 -3.9
597,930 - ABZR87_RS02880 0.34 +1.2
597,967 + ABZR87_RS02880 0.36 -1.2
597,968 - ABZR87_RS02880 0.36 -2.2
597,968 - ABZR87_RS02880 0.36 -2.4
598,042 - ABZR87_RS02880 0.40 -2.4
598,115 - ABZR87_RS02880 0.44 -1.2
598,171 + ABZR87_RS02880 0.47 +1.3
598,171 + ABZR87_RS02880 0.47 -0.7
598,172 - ABZR87_RS02880 0.47 -2.4
598,172 - ABZR87_RS02880 0.47 -3.0
598,172 - ABZR87_RS02880 0.47 -0.1
598,172 - ABZR87_RS02880 0.47 -4.3
598,174 + ABZR87_RS02880 0.47 +2.1
598,174 + ABZR87_RS02880 0.47 +1.4
598,174 + ABZR87_RS02880 0.47 +0.1
598,175 - ABZR87_RS02880 0.47 -0.4
598,175 - ABZR87_RS02880 0.47 -1.4
598,175 - ABZR87_RS02880 0.47 +1.6

Or see this region's nucleotide sequence