Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02490

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02480 and ABZR87_RS02485 are separated by 8 nucleotidesABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotidesABZR87_RS02490 and ABZR87_RS02495 overlap by 4 nucleotides ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475 _RS02480 ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107 _RS02485 ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753 _RS02490 ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874 _RS02495 Position (kb) 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 527.175 kb on - strand, within ABZR87_RS02480at 527.470 kb on - strandat 527.470 kb on - strandat 527.480 kb on + strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.481 kb on - strandat 527.485 kb on + strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.486 kb on - strandat 527.497 kb on - strandat 527.905 kb on - strand, within ABZR87_RS02485at 528.165 kb on - strandat 528.165 kb on - strandat 528.165 kb on - strandat 528.857 kb on + strandat 528.858 kb on - strandat 528.869 kb on + strand, within ABZR87_RS02495at 528.870 kb on - strand, within ABZR87_RS02495at 529.095 kb on - strand, within ABZR87_RS02495at 529.096 kb on + strand, within ABZR87_RS02495at 529.096 kb on + strand, within ABZR87_RS02495at 529.096 kb on + strand, within ABZR87_RS02495at 529.096 kb on + strand, within ABZR87_RS02495at 529.097 kb on - strand, within ABZR87_RS02495at 529.151 kb on - strand, within ABZR87_RS02495at 529.258 kb on + strand, within ABZR87_RS02495at 529.259 kb on - strand, within ABZR87_RS02495at 529.259 kb on - strand, within ABZR87_RS02495at 529.259 kb on - strand, within ABZR87_RS02495at 529.375 kb on + strand, within ABZR87_RS02495at 529.375 kb on + strand, within ABZR87_RS02495at 529.375 kb on + strand, within ABZR87_RS02495at 529.375 kb on + strand, within ABZR87_RS02495at 529.375 kb on + strand, within ABZR87_RS02495at 529.376 kb on - strand, within ABZR87_RS02495at 529.376 kb on - strand, within ABZR87_RS02495at 529.376 kb on - strand, within ABZR87_RS02495at 529.453 kb on - strand, within ABZR87_RS02495at 529.495 kb on + strand, within ABZR87_RS02495at 529.495 kb on + strand, within ABZR87_RS02495at 529.496 kb on - strand, within ABZR87_RS02495at 529.496 kb on - strand, within ABZR87_RS02495at 529.496 kb on - strand, within ABZR87_RS02495at 529.496 kb on - strand, within ABZR87_RS02495at 529.496 kb on - strand, within ABZR87_RS02495at 529.735 kb on + strand, within ABZR87_RS02495at 529.736 kb on - strand, within ABZR87_RS02495at 529.736 kb on - strand, within ABZR87_RS02495at 529.736 kb on - strand, within ABZR87_RS02495

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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527,175 - ABZR87_RS02480 0.54 -0.0
527,470 - -2.0
527,470 - -1.4
527,480 + -1.4
527,481 - -0.6
527,481 - -1.9
527,481 - -1.0
527,481 - -1.4
527,481 - -2.4
527,481 - -2.1
527,481 - -1.0
527,481 - -2.9
527,485 + -2.4
527,486 - -3.0
527,486 - -1.0
527,486 - -1.9
527,486 - -2.4
527,486 - -2.4
527,497 - +0.5
527,905 - ABZR87_RS02485 0.67 -1.9
528,165 - +0.5
528,165 - -0.5
528,165 - -3.6
528,857 + -2.1
528,858 - -2.0
528,869 + ABZR87_RS02495 0.11 -1.8
528,870 - ABZR87_RS02495 0.11 -1.6
529,095 - ABZR87_RS02495 0.31 +1.3
529,096 + ABZR87_RS02495 0.31 -2.5
529,096 + ABZR87_RS02495 0.31 -3.1
529,096 + ABZR87_RS02495 0.31 -3.6
529,096 + ABZR87_RS02495 0.31 -3.0
529,097 - ABZR87_RS02495 0.31 +1.2
529,151 - ABZR87_RS02495 0.36 +1.5
529,258 + ABZR87_RS02495 0.45 +0.2
529,259 - ABZR87_RS02495 0.45 +1.5
529,259 - ABZR87_RS02495 0.45 -1.8
529,259 - ABZR87_RS02495 0.45 -1.1
529,375 + ABZR87_RS02495 0.56 -0.8
529,375 + ABZR87_RS02495 0.56 -3.0
529,375 + ABZR87_RS02495 0.56 -3.4
529,375 + ABZR87_RS02495 0.56 -3.0
529,375 + ABZR87_RS02495 0.56 +1.8
529,376 - ABZR87_RS02495 0.56 -3.0
529,376 - ABZR87_RS02495 0.56 +1.3
529,376 - ABZR87_RS02495 0.56 -0.2
529,453 - ABZR87_RS02495 0.62 +0.4
529,495 + ABZR87_RS02495 0.66 -4.4
529,495 + ABZR87_RS02495 0.66 -1.9
529,496 - ABZR87_RS02495 0.66 -2.6
529,496 - ABZR87_RS02495 0.66 +1.3
529,496 - ABZR87_RS02495 0.66 -1.8
529,496 - ABZR87_RS02495 0.66 -0.0
529,496 - ABZR87_RS02495 0.66 -2.8
529,735 + ABZR87_RS02495 0.88 -1.8
529,736 - ABZR87_RS02495 0.88 +0.5
529,736 - ABZR87_RS02495 0.88 +1.8
529,736 - ABZR87_RS02495 0.88 -3.6

Or see this region's nucleotide sequence