Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02180

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02175 and ABZR87_RS02180 are separated by 12 nucleotidesABZR87_RS02180 and ABZR87_RS02185 are separated by 68 nucleotides ABZR87_RS02175: ABZR87_RS02175 - FUSC family protein, at 465,408 to 467,624 _RS02175 ABZR87_RS02180: ABZR87_RS02180 - M61 family metallopeptidase, at 467,637 to 469,499 _RS02180 ABZR87_RS02185: ABZR87_RS02185 - MDR family oxidoreductase, at 469,568 to 470,584 _RS02185 Position (kb) 467 468 469 470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 466.732 kb on + strand, within ABZR87_RS02175at 466.733 kb on - strand, within ABZR87_RS02175at 466.733 kb on - strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.774 kb on + strand, within ABZR87_RS02175at 466.775 kb on - strand, within ABZR87_RS02175at 466.870 kb on + strand, within ABZR87_RS02175at 466.871 kb on - strand, within ABZR87_RS02175at 466.871 kb on - strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.894 kb on + strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.895 kb on - strand, within ABZR87_RS02175at 466.900 kb on + strand, within ABZR87_RS02175at 466.900 kb on + strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 466.901 kb on - strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.062 kb on + strand, within ABZR87_RS02175at 467.063 kb on - strand, within ABZR87_RS02175at 467.087 kb on - strand, within ABZR87_RS02175at 467.087 kb on - strand, within ABZR87_RS02175at 467.101 kb on + strand, within ABZR87_RS02175at 467.133 kb on - strand, within ABZR87_RS02175at 467.133 kb on - strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.174 kb on + strand, within ABZR87_RS02175at 467.175 kb on - strand, within ABZR87_RS02175at 467.175 kb on - strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.176 kb on + strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.177 kb on - strand, within ABZR87_RS02175at 467.363 kb on - strand, within ABZR87_RS02175at 467.562 kb on - strandat 467.581 kb on + strandat 467.581 kb on + strandat 467.581 kb on + strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.582 kb on - strandat 467.591 kb on - strandat 467.617 kb on + strandat 467.617 kb on + strandat 467.618 kb on - strandat 467.618 kb on - strandat 467.630 kb on + strandat 467.962 kb on + strand, within ABZR87_RS02180at 468.184 kb on + strand, within ABZR87_RS02180at 468.184 kb on + strand, within ABZR87_RS02180at 468.185 kb on - strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.199 kb on + strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.200 kb on - strand, within ABZR87_RS02180at 468.204 kb on + strand, within ABZR87_RS02180at 468.304 kb on + strand, within ABZR87_RS02180at 468.304 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.307 kb on + strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.308 kb on - strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.346 kb on + strand, within ABZR87_RS02180at 468.347 kb on - strand, within ABZR87_RS02180at 468.349 kb on + strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.350 kb on - strand, within ABZR87_RS02180at 468.448 kb on + strand, within ABZR87_RS02180at 468.449 kb on - strand, within ABZR87_RS02180at 468.449 kb on - strand, within ABZR87_RS02180at 468.496 kb on + strand, within ABZR87_RS02180at 468.496 kb on + strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.497 kb on - strand, within ABZR87_RS02180at 468.499 kb on + strand, within ABZR87_RS02180at 468.499 kb on + strand, within ABZR87_RS02180at 468.500 kb on - strand, within ABZR87_RS02180at 468.500 kb on - strand, within ABZR87_RS02180at 468.560 kb on - strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.610 kb on + strand, within ABZR87_RS02180at 468.611 kb on - strand, within ABZR87_RS02180at 468.643 kb on + strand, within ABZR87_RS02180at 468.644 kb on - strand, within ABZR87_RS02180at 468.696 kb on + strand, within ABZR87_RS02180at 468.734 kb on - strand, within ABZR87_RS02180at 468.767 kb on - strand, within ABZR87_RS02180at 468.767 kb on - strand, within ABZR87_RS02180at 468.894 kb on - strand, within ABZR87_RS02180at 468.982 kb on + strand, within ABZR87_RS02180at 468.982 kb on + strand, within ABZR87_RS02180at 468.982 kb on + strand, within ABZR87_RS02180at 468.983 kb on - strand, within ABZR87_RS02180at 468.998 kb on - strand, within ABZR87_RS02180at 468.998 kb on - strand, within ABZR87_RS02180at 468.998 kb on - strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.228 kb on + strand, within ABZR87_RS02180at 469.229 kb on - strand, within ABZR87_RS02180at 469.229 kb on - strand, within ABZR87_RS02180at 469.229 kb on - strand, within ABZR87_RS02180at 469.229 kb on - strand, within ABZR87_RS02180at 469.229 kb on - strand, within ABZR87_RS02180at 469.237 kb on + strand, within ABZR87_RS02180at 469.237 kb on + strand, within ABZR87_RS02180at 469.369 kb on + strandat 469.369 kb on + strandat 469.369 kb on + strandat 469.369 kb on + strandat 469.369 kb on + strandat 469.370 kb on - strandat 469.370 kb on - strandat 469.370 kb on - strandat 469.370 kb on - strandat 469.483 kb on + strandat 469.483 kb on + strandat 469.484 kb on - strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.511 kb on + strandat 469.512 kb on - strandat 469.512 kb on - strandat 469.512 kb on - strandat 469.512 kb on - strandat 469.512 kb on - strandat 469.512 kb on - strandat 469.849 kb on - strand, within ABZR87_RS02185at 470.163 kb on + strand, within ABZR87_RS02185at 470.164 kb on - strand, within ABZR87_RS02185at 470.164 kb on - strand, within ABZR87_RS02185at 470.387 kb on + strand, within ABZR87_RS02185at 470.387 kb on + strand, within ABZR87_RS02185at 470.388 kb on - strand, within ABZR87_RS02185at 470.427 kb on + strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185at 470.428 kb on - strand, within ABZR87_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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466,732 + ABZR87_RS02175 0.60 +0.0
466,733 - ABZR87_RS02175 0.60 +2.3
466,733 - ABZR87_RS02175 0.60 -0.7
466,774 + ABZR87_RS02175 0.62 -2.9
466,774 + ABZR87_RS02175 0.62 -2.9
466,774 + ABZR87_RS02175 0.62 -2.5
466,775 - ABZR87_RS02175 0.62 -2.6
466,870 + ABZR87_RS02175 0.66 -0.6
466,871 - ABZR87_RS02175 0.66 -0.1
466,871 - ABZR87_RS02175 0.66 -3.2
466,894 + ABZR87_RS02175 0.67 +0.3
466,894 + ABZR87_RS02175 0.67 -2.4
466,894 + ABZR87_RS02175 0.67 -1.0
466,894 + ABZR87_RS02175 0.67 +0.5
466,894 + ABZR87_RS02175 0.67 +0.4
466,895 - ABZR87_RS02175 0.67 -0.4
466,895 - ABZR87_RS02175 0.67 -3.4
466,895 - ABZR87_RS02175 0.67 -0.3
466,895 - ABZR87_RS02175 0.67 -0.5
466,895 - ABZR87_RS02175 0.67 -0.8
466,895 - ABZR87_RS02175 0.67 -2.6
466,900 + ABZR87_RS02175 0.67 +1.0
466,900 + ABZR87_RS02175 0.67 -2.6
466,901 - ABZR87_RS02175 0.67 -3.3
466,901 - ABZR87_RS02175 0.67 -0.5
466,901 - ABZR87_RS02175 0.67 +0.7
466,901 - ABZR87_RS02175 0.67 -2.1
467,062 + ABZR87_RS02175 0.75 +0.3
467,062 + ABZR87_RS02175 0.75 -1.4
467,062 + ABZR87_RS02175 0.75 +1.8
467,062 + ABZR87_RS02175 0.75 -2.5
467,062 + ABZR87_RS02175 0.75 -2.5
467,063 - ABZR87_RS02175 0.75 +0.2
467,087 - ABZR87_RS02175 0.76 -0.3
467,087 - ABZR87_RS02175 0.76 -3.0
467,101 + ABZR87_RS02175 0.76 -2.1
467,133 - ABZR87_RS02175 0.78 +0.4
467,133 - ABZR87_RS02175 0.78 -2.6
467,174 + ABZR87_RS02175 0.80 +1.0
467,174 + ABZR87_RS02175 0.80 +1.0
467,174 + ABZR87_RS02175 0.80 +1.4
467,174 + ABZR87_RS02175 0.80 +1.1
467,175 - ABZR87_RS02175 0.80 -1.1
467,175 - ABZR87_RS02175 0.80 -3.2
467,176 + ABZR87_RS02175 0.80 -3.2
467,176 + ABZR87_RS02175 0.80 -0.6
467,176 + ABZR87_RS02175 0.80 +0.6
467,176 + ABZR87_RS02175 0.80 -1.6
467,176 + ABZR87_RS02175 0.80 +1.7
467,176 + ABZR87_RS02175 0.80 +1.2
467,176 + ABZR87_RS02175 0.80 -4.1
467,176 + ABZR87_RS02175 0.80 +0.4
467,177 - ABZR87_RS02175 0.80 +1.5
467,177 - ABZR87_RS02175 0.80 -0.5
467,177 - ABZR87_RS02175 0.80 +2.1
467,363 - ABZR87_RS02175 0.88 -0.5
467,562 - -1.6
467,581 + -2.8
467,581 + -0.6
467,581 + +0.2
467,582 - +1.0
467,582 - -0.9
467,582 - -3.0
467,582 - -2.6
467,591 - -0.6
467,617 + -2.6
467,617 + +0.9
467,618 - +0.2
467,618 - -2.1
467,630 + +0.9
467,962 + ABZR87_RS02180 0.17 -0.4
468,184 + ABZR87_RS02180 0.29 -3.3
468,184 + ABZR87_RS02180 0.29 +0.3
468,185 - ABZR87_RS02180 0.29 +0.8
468,199 + ABZR87_RS02180 0.30 -3.4
468,199 + ABZR87_RS02180 0.30 -2.4
468,199 + ABZR87_RS02180 0.30 -2.7
468,199 + ABZR87_RS02180 0.30 -2.6
468,199 + ABZR87_RS02180 0.30 -3.1
468,199 + ABZR87_RS02180 0.30 -2.5
468,200 - ABZR87_RS02180 0.30 -2.9
468,200 - ABZR87_RS02180 0.30 -1.9
468,200 - ABZR87_RS02180 0.30 -3.4
468,204 + ABZR87_RS02180 0.30 -3.0
468,304 + ABZR87_RS02180 0.36 -3.2
468,304 + ABZR87_RS02180 0.36 -2.2
468,307 + ABZR87_RS02180 0.36 -1.2
468,307 + ABZR87_RS02180 0.36 -3.3
468,307 + ABZR87_RS02180 0.36 -2.1
468,307 + ABZR87_RS02180 0.36 -4.3
468,307 + ABZR87_RS02180 0.36 -3.1
468,307 + ABZR87_RS02180 0.36 -3.4
468,307 + ABZR87_RS02180 0.36 -2.9
468,307 + ABZR87_RS02180 0.36 -0.8
468,307 + ABZR87_RS02180 0.36 -3.5
468,308 - ABZR87_RS02180 0.36 -2.1
468,308 - ABZR87_RS02180 0.36 -0.6
468,308 - ABZR87_RS02180 0.36 +0.3
468,346 + ABZR87_RS02180 0.38 +0.1
468,346 + ABZR87_RS02180 0.38 -1.1
468,346 + ABZR87_RS02180 0.38 -0.9
468,347 - ABZR87_RS02180 0.38 -1.4
468,349 + ABZR87_RS02180 0.38 -2.7
468,350 - ABZR87_RS02180 0.38 -3.3
468,350 - ABZR87_RS02180 0.38 -0.1
468,350 - ABZR87_RS02180 0.38 -2.0
468,448 + ABZR87_RS02180 0.44 -2.6
468,449 - ABZR87_RS02180 0.44 -2.0
468,449 - ABZR87_RS02180 0.44 -1.8
468,496 + ABZR87_RS02180 0.46 -4.1
468,496 + ABZR87_RS02180 0.46 -2.5
468,497 - ABZR87_RS02180 0.46 -3.5
468,497 - ABZR87_RS02180 0.46 -4.2
468,497 - ABZR87_RS02180 0.46 -1.3
468,497 - ABZR87_RS02180 0.46 -4.1
468,497 - ABZR87_RS02180 0.46 -3.6
468,499 + ABZR87_RS02180 0.46 -1.9
468,499 + ABZR87_RS02180 0.46 -1.6
468,500 - ABZR87_RS02180 0.46 -3.2
468,500 - ABZR87_RS02180 0.46 -2.9
468,560 - ABZR87_RS02180 0.50 -1.7
468,610 + ABZR87_RS02180 0.52 -1.8
468,610 + ABZR87_RS02180 0.52 -2.7
468,610 + ABZR87_RS02180 0.52 -4.5
468,611 - ABZR87_RS02180 0.52 -0.7
468,643 + ABZR87_RS02180 0.54 -4.0
468,644 - ABZR87_RS02180 0.54 -3.0
468,696 + ABZR87_RS02180 0.57 -2.2
468,734 - ABZR87_RS02180 0.59 -2.6
468,767 - ABZR87_RS02180 0.61 -1.1
468,767 - ABZR87_RS02180 0.61 -2.6
468,894 - ABZR87_RS02180 0.67 +0.2
468,982 + ABZR87_RS02180 0.72 -2.8
468,982 + ABZR87_RS02180 0.72 -3.2
468,982 + ABZR87_RS02180 0.72 -4.1
468,983 - ABZR87_RS02180 0.72 -2.1
468,998 - ABZR87_RS02180 0.73 -1.2
468,998 - ABZR87_RS02180 0.73 -0.1
468,998 - ABZR87_RS02180 0.73 -1.8
469,228 + ABZR87_RS02180 0.85 -1.9
469,228 + ABZR87_RS02180 0.85 -2.6
469,228 + ABZR87_RS02180 0.85 -2.9
469,228 + ABZR87_RS02180 0.85 -4.0
469,228 + ABZR87_RS02180 0.85 -1.9
469,228 + ABZR87_RS02180 0.85 -3.2
469,228 + ABZR87_RS02180 0.85 -3.4
469,229 - ABZR87_RS02180 0.85 -1.3
469,229 - ABZR87_RS02180 0.85 -3.3
469,229 - ABZR87_RS02180 0.85 -1.4
469,229 - ABZR87_RS02180 0.85 -3.8
469,229 - ABZR87_RS02180 0.85 -2.1
469,237 + ABZR87_RS02180 0.86 -1.6
469,237 + ABZR87_RS02180 0.86 -2.4
469,369 + -1.4
469,369 + -3.0
469,369 + +0.1
469,369 + -3.8
469,369 + -2.1
469,370 - -1.4
469,370 - -0.4
469,370 - -0.6
469,370 - -0.6
469,483 + -3.0
469,483 + -1.1
469,484 - +0.7
469,511 + +1.1
469,511 + -1.9
469,511 + +4.2
469,511 + +2.8
469,511 + +2.1
469,511 + +2.8
469,511 + -1.4
469,511 + +1.8
469,512 - +2.5
469,512 - +1.7
469,512 - +2.9
469,512 - +2.9
469,512 - +4.7
469,512 - +3.3
469,849 - ABZR87_RS02185 0.28 +2.4
470,163 + ABZR87_RS02185 0.59 +1.1
470,164 - ABZR87_RS02185 0.59 +1.3
470,164 - ABZR87_RS02185 0.59 +2.4
470,387 + ABZR87_RS02185 0.81 -0.3
470,387 + ABZR87_RS02185 0.81 +0.3
470,388 - ABZR87_RS02185 0.81 +0.5
470,427 + ABZR87_RS02185 0.84 -0.1
470,428 - ABZR87_RS02185 0.85 -1.3
470,428 - ABZR87_RS02185 0.85 -3.1
470,428 - ABZR87_RS02185 0.85 -0.6
470,428 - ABZR87_RS02185 0.85 +0.5
470,428 - ABZR87_RS02185 0.85 +1.4
470,428 - ABZR87_RS02185 0.85 -0.6
470,428 - ABZR87_RS02185 0.85 +1.0

Or see this region's nucleotide sequence