Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01140

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01135 and ABZR87_RS01140 are separated by 17 nucleotidesABZR87_RS01140 and ABZR87_RS01145 are separated by 22 nucleotides ABZR87_RS01135: ABZR87_RS01135 - FAD-linked oxidase C-terminal domain-containing protein, at 235,898 to 237,397 _RS01135 ABZR87_RS01140: ABZR87_RS01140 - ion transporter, at 237,415 to 238,359 _RS01140 ABZR87_RS01145: ABZR87_RS01145 - glycolate oxidase subunit GlcE, at 238,382 to 239,515 _RS01145 Position (kb) 237 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 236.745 kb on - strand, within ABZR87_RS01135at 236.948 kb on + strand, within ABZR87_RS01135at 236.948 kb on + strand, within ABZR87_RS01135at 236.948 kb on + strand, within ABZR87_RS01135at 236.948 kb on + strand, within ABZR87_RS01135at 236.949 kb on - strand, within ABZR87_RS01135at 236.949 kb on - strand, within ABZR87_RS01135at 236.949 kb on - strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.951 kb on + strand, within ABZR87_RS01135at 236.952 kb on - strand, within ABZR87_RS01135at 236.952 kb on - strand, within ABZR87_RS01135at 236.952 kb on - strand, within ABZR87_RS01135at 237.026 kb on + strand, within ABZR87_RS01135at 237.026 kb on + strand, within ABZR87_RS01135at 237.026 kb on + strand, within ABZR87_RS01135at 237.026 kb on + strand, within ABZR87_RS01135at 237.027 kb on - strand, within ABZR87_RS01135at 237.395 kb on + strandat 237.436 kb on - strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.456 kb on + strandat 237.457 kb on - strandat 237.457 kb on - strandat 237.476 kb on - strandat 237.476 kb on - strandat 237.517 kb on + strand, within ABZR87_RS01140at 237.517 kb on + strand, within ABZR87_RS01140at 237.517 kb on + strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.518 kb on - strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.629 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.697 kb on + strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.698 kb on - strand, within ABZR87_RS01140at 237.736 kb on + strand, within ABZR87_RS01140at 237.737 kb on - strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.817 kb on + strand, within ABZR87_RS01140at 237.818 kb on - strand, within ABZR87_RS01140at 237.818 kb on - strand, within ABZR87_RS01140at 237.880 kb on + strand, within ABZR87_RS01140at 237.881 kb on - strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.991 kb on + strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 237.992 kb on - strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.042 kb on + strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.043 kb on - strand, within ABZR87_RS01140at 238.489 kb on + strandat 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.568 kb on + strand, within ABZR87_RS01145at 238.569 kb on - strand, within ABZR87_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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236,745 - ABZR87_RS01135 0.56 +2.3
236,948 + ABZR87_RS01135 0.70 +0.5
236,948 + ABZR87_RS01135 0.70 -0.9
236,948 + ABZR87_RS01135 0.70 +1.2
236,948 + ABZR87_RS01135 0.70 +0.8
236,949 - ABZR87_RS01135 0.70 -4.7
236,949 - ABZR87_RS01135 0.70 +1.1
236,949 - ABZR87_RS01135 0.70 -3.1
236,951 + ABZR87_RS01135 0.70 +0.5
236,951 + ABZR87_RS01135 0.70 +2.3
236,951 + ABZR87_RS01135 0.70 +0.1
236,951 + ABZR87_RS01135 0.70 -2.1
236,951 + ABZR87_RS01135 0.70 -0.9
236,951 + ABZR87_RS01135 0.70 -3.3
236,952 - ABZR87_RS01135 0.70 -0.2
236,952 - ABZR87_RS01135 0.70 -3.0
236,952 - ABZR87_RS01135 0.70 +0.3
237,026 + ABZR87_RS01135 0.75 +0.4
237,026 + ABZR87_RS01135 0.75 -3.6
237,026 + ABZR87_RS01135 0.75 -0.7
237,026 + ABZR87_RS01135 0.75 +0.4
237,027 - ABZR87_RS01135 0.75 -1.4
237,395 + -2.6
237,436 - -2.2
237,456 + +1.0
237,456 + -0.6
237,456 + -2.2
237,456 + -1.1
237,457 - -2.5
237,457 - -2.8
237,476 - +1.1
237,476 - -2.2
237,517 + ABZR87_RS01140 0.11 -3.6
237,517 + ABZR87_RS01140 0.11 -1.8
237,517 + ABZR87_RS01140 0.11 +1.2
237,518 - ABZR87_RS01140 0.11 -3.4
237,518 - ABZR87_RS01140 0.11 -4.1
237,518 - ABZR87_RS01140 0.11 -1.2
237,518 - ABZR87_RS01140 0.11 -1.6
237,518 - ABZR87_RS01140 0.11 -1.1
237,518 - ABZR87_RS01140 0.11 -0.2
237,518 - ABZR87_RS01140 0.11 -2.7
237,518 - ABZR87_RS01140 0.11 -4.1
237,518 - ABZR87_RS01140 0.11 -0.2
237,629 + ABZR87_RS01140 0.23 +1.8
237,629 + ABZR87_RS01140 0.23 +0.1
237,629 + ABZR87_RS01140 0.23 +1.9
237,629 + ABZR87_RS01140 0.23 +0.0
237,697 + ABZR87_RS01140 0.30 -1.7
237,697 + ABZR87_RS01140 0.30 -3.6
237,697 + ABZR87_RS01140 0.30 -1.6
237,697 + ABZR87_RS01140 0.30 -3.5
237,698 - ABZR87_RS01140 0.30 +1.1
237,698 - ABZR87_RS01140 0.30 +0.7
237,698 - ABZR87_RS01140 0.30 -1.2
237,736 + ABZR87_RS01140 0.34 -0.2
237,737 - ABZR87_RS01140 0.34 -1.4
237,817 + ABZR87_RS01140 0.43 -1.2
237,817 + ABZR87_RS01140 0.43 -2.4
237,817 + ABZR87_RS01140 0.43 -3.8
237,818 - ABZR87_RS01140 0.43 -2.7
237,818 - ABZR87_RS01140 0.43 -1.7
237,880 + ABZR87_RS01140 0.49 -1.6
237,881 - ABZR87_RS01140 0.49 -3.1
237,991 + ABZR87_RS01140 0.61 -1.8
237,991 + ABZR87_RS01140 0.61 -2.9
237,991 + ABZR87_RS01140 0.61 -3.0
237,991 + ABZR87_RS01140 0.61 -3.2
237,991 + ABZR87_RS01140 0.61 -3.3
237,992 - ABZR87_RS01140 0.61 -4.5
237,992 - ABZR87_RS01140 0.61 +1.1
237,992 - ABZR87_RS01140 0.61 +0.3
237,992 - ABZR87_RS01140 0.61 -4.1
237,992 - ABZR87_RS01140 0.61 -2.8
237,992 - ABZR87_RS01140 0.61 -2.9
238,042 + ABZR87_RS01140 0.66 -1.8
238,042 + ABZR87_RS01140 0.66 -3.9
238,042 + ABZR87_RS01140 0.66 -3.3
238,042 + ABZR87_RS01140 0.66 +1.8
238,043 - ABZR87_RS01140 0.66 +2.8
238,043 - ABZR87_RS01140 0.66 -1.8
238,043 - ABZR87_RS01140 0.66 -0.8
238,043 - ABZR87_RS01140 0.66 +0.8
238,489 + +0.8
238,568 + ABZR87_RS01145 0.16 +1.6
238,568 + ABZR87_RS01145 0.16 +1.7
238,568 + ABZR87_RS01145 0.16 -0.7
238,569 - ABZR87_RS01145 0.16 -0.8

Or see this region's nucleotide sequence