Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01065

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotidesABZR87_RS01065 and ABZR87_RS01070 are separated by 102 nucleotidesABZR87_RS01070 and ABZR87_RS01075 are separated by 261 nucleotides ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065 ABZR87_RS01070: ABZR87_RS01070 - hypothetical protein, at 214,765 to 215,211 _RS01070 ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122 _RS01075 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 211.984 kb on + strandat 211.985 kb on - strandat 211.985 kb on - strandat 211.987 kb on - strandat 211.988 kb on + strandat 211.991 kb on - strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 212.943 kb on + strandat 212.944 kb on - strandat 212.944 kb on - strandat 213.027 kb on + strandat 213.028 kb on - strandat 213.028 kb on - strandat 213.032 kb on + strandat 213.188 kb on + strand, within ABZR87_RS01065at 213.581 kb on + strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.808 kb on + strand, within ABZR87_RS01065at 213.809 kb on - strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.015 kb on + strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.016 kb on - strand, within ABZR87_RS01065at 214.017 kb on + strand, within ABZR87_RS01065at 214.018 kb on - strand, within ABZR87_RS01065at 214.018 kb on - strand, within ABZR87_RS01065at 214.018 kb on - strand, within ABZR87_RS01065at 214.018 kb on - strand, within ABZR87_RS01065at 214.018 kb on - strand, within ABZR87_RS01065at 214.669 kb on - strandat 214.669 kb on - strandat 214.669 kb on - strandat 214.734 kb on + strandat 214.734 kb on + strandat 214.915 kb on - strand, within ABZR87_RS01070at 215.066 kb on + strand, within ABZR87_RS01070at 215.066 kb on + strand, within ABZR87_RS01070at 215.067 kb on - strand, within ABZR87_RS01070at 215.067 kb on - strand, within ABZR87_RS01070at 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.296 kb on - strandat 215.296 kb on - strandat 215.296 kb on - strandat 215.387 kb on + strandat 215.387 kb on + strandat 215.388 kb on - strandat 215.403 kb on + strandat 215.403 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.597 kb on - strandat 215.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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211,984 + -0.2
211,985 - -1.4
211,985 - -1.5
211,987 - -3.0
211,988 + +3.1
211,991 - -0.2
211,997 + +0.5
211,997 + -2.5
211,997 + -0.5
211,997 + -2.1
212,943 + -1.5
212,944 - -3.2
212,944 - -1.1
213,027 + -3.3
213,028 - +1.5
213,028 - +0.6
213,032 + -2.5
213,188 + ABZR87_RS01065 0.14 +2.0
213,581 + ABZR87_RS01065 0.37 +0.6
213,582 - ABZR87_RS01065 0.37 +0.8
213,582 - ABZR87_RS01065 0.37 -2.0
213,582 - ABZR87_RS01065 0.37 +0.0
213,702 + ABZR87_RS01065 0.44 -2.8
213,702 + ABZR87_RS01065 0.44 -0.2
213,703 - ABZR87_RS01065 0.44 +0.3
213,703 - ABZR87_RS01065 0.44 -1.9
213,703 - ABZR87_RS01065 0.44 +0.8
213,808 + ABZR87_RS01065 0.50 -1.5
213,809 - ABZR87_RS01065 0.50 -1.1
214,015 + ABZR87_RS01065 0.62 -3.7
214,015 + ABZR87_RS01065 0.62 -0.6
214,015 + ABZR87_RS01065 0.62 -3.7
214,015 + ABZR87_RS01065 0.62 -2.7
214,015 + ABZR87_RS01065 0.62 +2.1
214,015 + ABZR87_RS01065 0.62 -2.4
214,016 - ABZR87_RS01065 0.62 +0.4
214,016 - ABZR87_RS01065 0.62 -0.0
214,016 - ABZR87_RS01065 0.62 +1.7
214,016 - ABZR87_RS01065 0.62 +2.7
214,016 - ABZR87_RS01065 0.62 -0.4
214,016 - ABZR87_RS01065 0.62 -3.0
214,016 - ABZR87_RS01065 0.62 +1.2
214,016 - ABZR87_RS01065 0.62 -1.8
214,017 + ABZR87_RS01065 0.62 +0.6
214,018 - ABZR87_RS01065 0.62 -2.7
214,018 - ABZR87_RS01065 0.62 +2.2
214,018 - ABZR87_RS01065 0.62 -0.8
214,018 - ABZR87_RS01065 0.62 +0.1
214,018 - ABZR87_RS01065 0.62 +1.2
214,669 - -0.8
214,669 - -0.1
214,669 - +0.8
214,734 + -1.5
214,734 + -0.9
214,915 - ABZR87_RS01070 0.34 +3.4
215,066 + ABZR87_RS01070 0.67 +1.5
215,066 + ABZR87_RS01070 0.67 +1.5
215,067 - ABZR87_RS01070 0.68 +1.1
215,067 - ABZR87_RS01070 0.68 +1.1
215,295 + -1.9
215,295 + +1.5
215,295 + +1.5
215,296 - +0.6
215,296 - -1.5
215,296 - -3.4
215,387 + -2.8
215,387 + +0.0
215,388 - -1.0
215,403 + +2.5
215,403 + +1.1
215,596 + -0.7
215,596 + -1.5
215,596 + +1.7
215,596 + +0.7
215,596 + -0.1
215,596 + +0.7
215,597 - +2.2
215,597 - -2.9

Or see this region's nucleotide sequence