Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00265 and ABZR87_RS00270 are separated by 9 nucleotides ABZR87_RS00270 and ABZR87_RS00275 are separated by 1 nucleotides
ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318
_RS00265
ABZR87_RS00270: ABZR87_RS00270 - sensor domain-containing diguanylate cyclase, at 54,328 to 55,992
_RS00270
ABZR87_RS00275: ABZR87_RS00275 - NAD-dependent epimerase/dehydratase family protein, at 55,994 to 56,995
_RS00275
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 53.366 kb on - strand, within ABZR87_RS00265 at 53.395 kb on + strand, within ABZR87_RS00265 at 53.396 kb on - strand, within ABZR87_RS00265 at 53.725 kb on + strand, within ABZR87_RS00265 at 53.726 kb on - strand, within ABZR87_RS00265 at 53.798 kb on - strand, within ABZR87_RS00265 at 53.806 kb on + strand, within ABZR87_RS00265 at 53.807 kb on - strand, within ABZR87_RS00265 at 53.807 kb on - strand, within ABZR87_RS00265 at 53.807 kb on - strand, within ABZR87_RS00265 at 53.807 kb on - strand, within ABZR87_RS00265 at 53.807 kb on - strand, within ABZR87_RS00265 at 53.895 kb on + strand, within ABZR87_RS00265 at 53.895 kb on + strand, within ABZR87_RS00265 at 53.895 kb on + strand, within ABZR87_RS00265 at 53.895 kb on + strand, within ABZR87_RS00265 at 53.896 kb on - strand, within ABZR87_RS00265 at 54.371 kb on + strand at 54.371 kb on + strand at 54.371 kb on + strand at 54.918 kb on + strand, within ABZR87_RS00270 at 55.090 kb on - strand, within ABZR87_RS00270 at 55.090 kb on - strand, within ABZR87_RS00270 at 55.090 kb on - strand, within ABZR87_RS00270 at 55.152 kb on - strand, within ABZR87_RS00270 at 55.181 kb on + strand, within ABZR87_RS00270 at 55.190 kb on + strand, within ABZR87_RS00270 at 55.190 kb on + strand, within ABZR87_RS00270 at 55.190 kb on + strand, within ABZR87_RS00270 at 55.190 kb on + strand, within ABZR87_RS00270 at 55.367 kb on + strand, within ABZR87_RS00270 at 55.383 kb on - strand, within ABZR87_RS00270 at 55.383 kb on - strand, within ABZR87_RS00270 at 55.383 kb on - strand, within ABZR87_RS00270 at 55.383 kb on - strand, within ABZR87_RS00270 at 55.473 kb on + strand, within ABZR87_RS00270 at 55.473 kb on + strand, within ABZR87_RS00270 at 55.473 kb on + strand, within ABZR87_RS00270 at 55.474 kb on - strand, within ABZR87_RS00270 at 55.474 kb on - strand, within ABZR87_RS00270 at 55.475 kb on + strand, within ABZR87_RS00270 at 55.475 kb on + strand, within ABZR87_RS00270 at 55.475 kb on + strand, within ABZR87_RS00270 at 55.475 kb on + strand, within ABZR87_RS00270 at 55.475 kb on + strand, within ABZR87_RS00270 at 55.476 kb on - strand, within ABZR87_RS00270 at 55.476 kb on - strand, within ABZR87_RS00270 at 55.476 kb on - strand, within ABZR87_RS00270 at 55.544 kb on + strand, within ABZR87_RS00270 at 55.544 kb on + strand, within ABZR87_RS00270 at 55.544 kb on + strand, within ABZR87_RS00270 at 55.544 kb on + strand, within ABZR87_RS00270 at 55.544 kb on + strand, within ABZR87_RS00270 at 55.545 kb on - strand, within ABZR87_RS00270 at 55.545 kb on - strand, within ABZR87_RS00270 at 55.571 kb on + strand, within ABZR87_RS00270 at 55.571 kb on + strand, within ABZR87_RS00270 at 55.571 kb on + strand, within ABZR87_RS00270 at 55.571 kb on + strand, within ABZR87_RS00270 at 55.572 kb on - strand, within ABZR87_RS00270 at 56.193 kb on + strand, within ABZR87_RS00275 at 56.310 kb on + strand, within ABZR87_RS00275 at 56.310 kb on + strand, within ABZR87_RS00275 at 56.311 kb on - strand, within ABZR87_RS00275 at 56.311 kb on - strand, within ABZR87_RS00275 at 56.311 kb on - strand, within ABZR87_RS00275 at 56.382 kb on + strand, within ABZR87_RS00275 at 56.382 kb on + strand, within ABZR87_RS00275 at 56.382 kb on + strand, within ABZR87_RS00275 at 56.383 kb on - strand, within ABZR87_RS00275 at 56.383 kb on - strand, within ABZR87_RS00275 at 56.383 kb on - strand, within ABZR87_RS00275 at 56.383 kb on - strand, within ABZR87_RS00275 at 56.510 kb on + strand, within ABZR87_RS00275 at 56.535 kb on + strand, within ABZR87_RS00275 at 56.535 kb on + strand, within ABZR87_RS00275 at 56.535 kb on + strand, within ABZR87_RS00275 at 56.535 kb on + strand, within ABZR87_RS00275 at 56.536 kb on - strand, within ABZR87_RS00275 at 56.536 kb on - strand, within ABZR87_RS00275 at 56.556 kb on + strand, within ABZR87_RS00275 at 56.556 kb on + strand, within ABZR87_RS00275 at 56.556 kb on + strand, within ABZR87_RS00275 at 56.557 kb on - strand, within ABZR87_RS00275 at 56.680 kb on + strand, within ABZR87_RS00275 at 56.681 kb on - strand, within ABZR87_RS00275 at 56.681 kb on - strand, within ABZR87_RS00275 at 56.681 kb on - strand, within ABZR87_RS00275 at 56.681 kb on - strand, within ABZR87_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 53,366 - ABZR87_RS00265 0.48 +1.3 53,395 + ABZR87_RS00265 0.49 -3.1 53,396 - ABZR87_RS00265 0.49 -4.3 53,725 + ABZR87_RS00265 0.67 -3.3 53,726 - ABZR87_RS00265 0.67 +2.6 53,798 - ABZR87_RS00265 0.71 -2.6 53,806 + ABZR87_RS00265 0.72 -1.6 53,807 - ABZR87_RS00265 0.72 +0.5 53,807 - ABZR87_RS00265 0.72 +0.3 53,807 - ABZR87_RS00265 0.72 +1.2 53,807 - ABZR87_RS00265 0.72 -0.8 53,807 - ABZR87_RS00265 0.72 +1.6 53,895 + ABZR87_RS00265 0.77 -0.8 53,895 + ABZR87_RS00265 0.77 +1.1 53,895 + ABZR87_RS00265 0.77 -0.3 53,895 + ABZR87_RS00265 0.77 -3.6 53,896 - ABZR87_RS00265 0.77 +0.2 54,371 + -1.0 54,371 + +1.3 54,371 + -3.8 54,918 + ABZR87_RS00270 0.35 +1.3 55,090 - ABZR87_RS00270 0.46 -1.1 55,090 - ABZR87_RS00270 0.46 -0.2 55,090 - ABZR87_RS00270 0.46 -0.2 55,152 - ABZR87_RS00270 0.49 -0.9 55,181 + ABZR87_RS00270 0.51 +0.5 55,190 + ABZR87_RS00270 0.52 -0.2 55,190 + ABZR87_RS00270 0.52 -0.8 55,190 + ABZR87_RS00270 0.52 +0.3 55,190 + ABZR87_RS00270 0.52 -3.8 55,367 + ABZR87_RS00270 0.62 +1.8 55,383 - ABZR87_RS00270 0.63 -0.6 55,383 - ABZR87_RS00270 0.63 -4.0 55,383 - ABZR87_RS00270 0.63 +2.8 55,383 - ABZR87_RS00270 0.63 -0.5 55,473 + ABZR87_RS00270 0.69 -2.1 55,473 + ABZR87_RS00270 0.69 -0.6 55,473 + ABZR87_RS00270 0.69 -3.1 55,474 - ABZR87_RS00270 0.69 -3.5 55,474 - ABZR87_RS00270 0.69 +0.9 55,475 + ABZR87_RS00270 0.69 -0.3 55,475 + ABZR87_RS00270 0.69 +1.8 55,475 + ABZR87_RS00270 0.69 -2.4 55,475 + ABZR87_RS00270 0.69 -0.8 55,475 + ABZR87_RS00270 0.69 -1.2 55,476 - ABZR87_RS00270 0.69 +1.1 55,476 - ABZR87_RS00270 0.69 -3.6 55,476 - ABZR87_RS00270 0.69 -1.3 55,544 + ABZR87_RS00270 0.73 +1.6 55,544 + ABZR87_RS00270 0.73 -1.6 55,544 + ABZR87_RS00270 0.73 +1.9 55,544 + ABZR87_RS00270 0.73 -1.8 55,544 + ABZR87_RS00270 0.73 +1.0 55,545 - ABZR87_RS00270 0.73 +0.9 55,545 - ABZR87_RS00270 0.73 -2.2 55,571 + ABZR87_RS00270 0.75 -0.8 55,571 + ABZR87_RS00270 0.75 -1.9 55,571 + ABZR87_RS00270 0.75 +1.0 55,571 + ABZR87_RS00270 0.75 -1.6 55,572 - ABZR87_RS00270 0.75 +1.0 56,193 + ABZR87_RS00275 0.20 +0.8 56,310 + ABZR87_RS00275 0.32 +1.2 56,310 + ABZR87_RS00275 0.32 -4.4 56,311 - ABZR87_RS00275 0.32 -4.2 56,311 - ABZR87_RS00275 0.32 +0.3 56,311 - ABZR87_RS00275 0.32 +1.7 56,382 + ABZR87_RS00275 0.39 -3.2 56,382 + ABZR87_RS00275 0.39 +1.8 56,382 + ABZR87_RS00275 0.39 -0.8 56,383 - ABZR87_RS00275 0.39 -0.9 56,383 - ABZR87_RS00275 0.39 +1.5 56,383 - ABZR87_RS00275 0.39 -0.8 56,383 - ABZR87_RS00275 0.39 -2.7 56,510 + ABZR87_RS00275 0.51 -0.1 56,535 + ABZR87_RS00275 0.54 +1.2 56,535 + ABZR87_RS00275 0.54 -1.1 56,535 + ABZR87_RS00275 0.54 +1.3 56,535 + ABZR87_RS00275 0.54 -2.2 56,536 - ABZR87_RS00275 0.54 +2.0 56,536 - ABZR87_RS00275 0.54 +1.7 56,556 + ABZR87_RS00275 0.56 +0.8 56,556 + ABZR87_RS00275 0.56 +0.4 56,556 + ABZR87_RS00275 0.56 +1.1 56,557 - ABZR87_RS00275 0.56 +2.8 56,680 + ABZR87_RS00275 0.68 -1.2 56,681 - ABZR87_RS00275 0.69 -3.7 56,681 - ABZR87_RS00275 0.69 +2.1 56,681 - ABZR87_RS00275 0.69 -2.9 56,681 - ABZR87_RS00275 0.69 +0.6
Or see this region's nucleotide sequence