Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00015

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00010 and ABZR87_RS00015 are separated by 2 nucleotidesABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotidesABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotides ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076 _RS00010 ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 Position (kb) 5 6 7Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4.107 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.318 kb on - strand, within ABZR87_RS00010at 4.701 kb on - strandat 4.701 kb on - strandat 4.701 kb on - strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.949 kb on - strandat 5.013 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.135 kb on - strandat 5.288 kb on - strand, within ABZR87_RS00015at 5.466 kb on + strand, within ABZR87_RS00015at 5.467 kb on - strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.515 kb on + strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.699 kb on - strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.765 kb on - strand, within ABZR87_RS00015at 5.812 kb on + strand, within ABZR87_RS00015at 5.820 kb on - strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.835 kb on - strand, within ABZR87_RS00015at 5.978 kb on - strand, within ABZR87_RS00015at 6.091 kb on + strand, within ABZR87_RS00015at 6.092 kb on - strand, within ABZR87_RS00015at 6.107 kb on + strand, within ABZR87_RS00015at 6.107 kb on + strand, within ABZR87_RS00015at 6.108 kb on - strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.232 kb on + strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.323 kb on - strand, within ABZR87_RS00015at 6.325 kb on + strand, within ABZR87_RS00015at 6.464 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.670 kb on + strand, within ABZR87_RS00015at 6.740 kb on - strandat 6.740 kb on - strandat 6.811 kb on + strandat 6.812 kb on - strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.919 kb on - strandat 6.919 kb on - strandat 6.928 kb on + strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.965 kb on + strandat 6.965 kb on + strandat 6.966 kb on - strandat 7.031 kb on + strandat 7.036 kb on + strandat 7.036 kb on + strandat 7.037 kb on - strandat 7.097 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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4,107 + ABZR87_RS00010 0.75 +2.2
4,317 + ABZR87_RS00010 0.81 -3.1
4,317 + ABZR87_RS00010 0.81 -0.2
4,318 - ABZR87_RS00010 0.81 +0.7
4,701 - -2.2
4,701 - +1.2
4,701 - +0.6
4,850 + +0.6
4,850 + -1.8
4,850 + -3.1
4,850 + +0.2
4,850 + +2.1
4,850 + -0.6
4,850 + +1.0
4,851 - +1.6
4,851 - +1.8
4,851 - +1.3
4,851 - +1.5
4,851 - +2.6
4,949 - -1.8
5,013 + -2.9
5,134 + -0.2
5,134 + -0.8
5,134 + -0.1
5,134 + -0.8
5,135 - -3.4
5,288 - ABZR87_RS00015 0.12 +0.1
5,466 + ABZR87_RS00015 0.22 +0.9
5,467 - ABZR87_RS00015 0.22 +1.1
5,513 + ABZR87_RS00015 0.24 -0.8
5,513 + ABZR87_RS00015 0.24 -0.2
5,515 + ABZR87_RS00015 0.24 +4.3
5,516 - ABZR87_RS00015 0.24 +0.8
5,516 - ABZR87_RS00015 0.24 +0.4
5,695 + ABZR87_RS00015 0.34 +0.4
5,695 + ABZR87_RS00015 0.34 -0.3
5,698 + ABZR87_RS00015 0.35 -1.7
5,698 + ABZR87_RS00015 0.35 +1.1
5,699 - ABZR87_RS00015 0.35 +0.7
5,725 + ABZR87_RS00015 0.36 +1.2
5,725 + ABZR87_RS00015 0.36 -2.2
5,725 + ABZR87_RS00015 0.36 -0.1
5,725 + ABZR87_RS00015 0.36 -1.4
5,725 + ABZR87_RS00015 0.36 +0.5
5,725 + ABZR87_RS00015 0.36 +1.5
5,725 + ABZR87_RS00015 0.36 +0.9
5,725 + ABZR87_RS00015 0.36 -1.8
5,725 + ABZR87_RS00015 0.36 +1.3
5,725 + ABZR87_RS00015 0.36 +1.4
5,725 + ABZR87_RS00015 0.36 +1.2
5,726 - ABZR87_RS00015 0.36 -1.0
5,726 - ABZR87_RS00015 0.36 +0.9
5,726 - ABZR87_RS00015 0.36 +2.6
5,726 - ABZR87_RS00015 0.36 -1.5
5,726 - ABZR87_RS00015 0.36 -1.7
5,726 - ABZR87_RS00015 0.36 +2.8
5,726 - ABZR87_RS00015 0.36 -2.1
5,726 - ABZR87_RS00015 0.36 +2.5
5,726 - ABZR87_RS00015 0.36 +0.3
5,726 - ABZR87_RS00015 0.36 +1.6
5,726 - ABZR87_RS00015 0.36 -0.2
5,764 + ABZR87_RS00015 0.38 -2.2
5,764 + ABZR87_RS00015 0.38 +2.3
5,765 - ABZR87_RS00015 0.38 +1.4
5,812 + ABZR87_RS00015 0.41 -0.2
5,820 - ABZR87_RS00015 0.41 +1.6
5,827 + ABZR87_RS00015 0.42 -2.1
5,827 + ABZR87_RS00015 0.42 +1.0
5,827 + ABZR87_RS00015 0.42 +2.7
5,827 + ABZR87_RS00015 0.42 -4.3
5,827 + ABZR87_RS00015 0.42 +1.8
5,828 - ABZR87_RS00015 0.42 -1.8
5,828 - ABZR87_RS00015 0.42 +0.7
5,828 - ABZR87_RS00015 0.42 -2.6
5,828 - ABZR87_RS00015 0.42 -0.0
5,835 - ABZR87_RS00015 0.42 +0.9
5,978 - ABZR87_RS00015 0.50 +1.6
6,091 + ABZR87_RS00015 0.57 -0.2
6,092 - ABZR87_RS00015 0.57 +1.8
6,107 + ABZR87_RS00015 0.57 +1.0
6,107 + ABZR87_RS00015 0.57 -4.6
6,108 - ABZR87_RS00015 0.58 -1.2
6,142 + ABZR87_RS00015 0.59 +1.2
6,142 + ABZR87_RS00015 0.59 -2.1
6,142 + ABZR87_RS00015 0.59 +0.4
6,143 - ABZR87_RS00015 0.60 +1.1
6,143 - ABZR87_RS00015 0.60 +0.4
6,143 - ABZR87_RS00015 0.60 -3.9
6,232 + ABZR87_RS00015 0.64 -3.6
6,233 - ABZR87_RS00015 0.65 +1.9
6,233 - ABZR87_RS00015 0.65 -3.6
6,250 + ABZR87_RS00015 0.65 +2.3
6,250 + ABZR87_RS00015 0.65 -1.0
6,251 - ABZR87_RS00015 0.66 +1.2
6,251 - ABZR87_RS00015 0.66 +2.3
6,322 + ABZR87_RS00015 0.70 +0.1
6,322 + ABZR87_RS00015 0.70 -2.4
6,323 - ABZR87_RS00015 0.70 -2.1
6,325 + ABZR87_RS00015 0.70 +3.4
6,464 + ABZR87_RS00015 0.77 -3.6
6,494 + ABZR87_RS00015 0.79 -1.8
6,494 + ABZR87_RS00015 0.79 -2.7
6,577 + ABZR87_RS00015 0.84 -0.2
6,577 + ABZR87_RS00015 0.84 +1.2
6,578 - ABZR87_RS00015 0.84 +2.1
6,578 - ABZR87_RS00015 0.84 -0.9
6,631 + ABZR87_RS00015 0.87 -2.7
6,631 + ABZR87_RS00015 0.87 +1.7
6,631 + ABZR87_RS00015 0.87 -2.4
6,631 + ABZR87_RS00015 0.87 -0.8
6,631 + ABZR87_RS00015 0.87 -2.2
6,632 - ABZR87_RS00015 0.87 +2.2
6,632 - ABZR87_RS00015 0.87 -4.5
6,632 - ABZR87_RS00015 0.87 +0.7
6,632 - ABZR87_RS00015 0.87 +1.6
6,632 - ABZR87_RS00015 0.87 +1.6
6,632 - ABZR87_RS00015 0.87 +1.3
6,632 - ABZR87_RS00015 0.87 +1.7
6,670 + ABZR87_RS00015 0.89 -2.4
6,740 - +1.9
6,740 - -3.1
6,811 + +1.4
6,812 - +3.1
6,918 + -2.6
6,918 + +0.8
6,918 + +3.3
6,918 + -4.4
6,919 - +0.9
6,919 - -3.2
6,928 + +0.9
6,929 - -3.1
6,929 - -3.2
6,965 + -1.6
6,965 + +2.6
6,966 - +1.5
7,031 + +1.0
7,036 + +1.1
7,036 + -1.8
7,037 - -0.9
7,097 + +0.9
7,113 + -1.2
7,113 + -2.9
7,113 + +1.7
7,272 + ABZR87_RS00020 0.89 +0.8
7,272 + ABZR87_RS00020 0.89 +0.7
7,272 + ABZR87_RS00020 0.89 -2.8
7,272 + ABZR87_RS00020 0.89 -1.2
7,272 + ABZR87_RS00020 0.89 -1.8
7,278 + +0.9
7,278 + +2.2
7,278 + +0.6

Or see this region's nucleotide sequence