Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0456

Experiment: BHIS with Ciprofloxacin Hydrochloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0455 and BT0456 overlap by 4 nucleotidesBT0456 and BT0457 are separated by 11 nucleotides BT0455: BT0455 - sialidase (Neuraminidase) (NCBI ptt file), at 557,455 to 559,089 BT0455 BT0456: BT0456 - beta-hexosaminidase precursor (NCBI ptt file), at 559,086 to 561,098 BT0456 BT0457: BT0457 - sialic acid-specific 9-O-acetylesterase (NCBI ptt file), at 561,110 to 563,188 BT0457 Position (kb) 559 560 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 558.112 kb on + strand, within BT0455at 558.113 kb on - strand, within BT0455at 558.113 kb on - strand, within BT0455at 558.124 kb on + strand, within BT0455at 558.127 kb on - strand, within BT0455at 558.129 kb on + strand, within BT0455at 558.130 kb on - strand, within BT0455at 558.130 kb on - strand, within BT0455at 558.152 kb on - strand, within BT0455at 558.156 kb on - strand, within BT0455at 558.276 kb on + strand, within BT0455at 558.277 kb on - strand, within BT0455at 558.426 kb on + strand, within BT0455at 558.451 kb on - strand, within BT0455at 558.595 kb on - strand, within BT0455at 558.595 kb on - strand, within BT0455at 558.659 kb on + strand, within BT0455at 558.798 kb on - strand, within BT0455at 558.802 kb on - strand, within BT0455at 558.835 kb on - strand, within BT0455at 558.847 kb on - strand, within BT0455at 558.852 kb on + strand, within BT0455at 558.898 kb on - strand, within BT0455at 558.907 kb on - strand, within BT0455at 558.985 kb on - strandat 559.138 kb on - strandat 559.139 kb on + strandat 559.142 kb on - strandat 559.142 kb on - strandat 559.284 kb on - strandat 559.311 kb on - strand, within BT0456at 559.319 kb on - strand, within BT0456at 559.345 kb on + strand, within BT0456at 559.345 kb on + strand, within BT0456at 559.411 kb on + strand, within BT0456at 559.447 kb on + strand, within BT0456at 559.448 kb on - strand, within BT0456at 559.497 kb on - strand, within BT0456at 559.499 kb on + strand, within BT0456at 559.547 kb on - strand, within BT0456at 559.558 kb on - strand, within BT0456at 559.723 kb on - strand, within BT0456at 559.761 kb on - strand, within BT0456at 559.923 kb on - strand, within BT0456at 559.981 kb on - strand, within BT0456at 560.032 kb on - strand, within BT0456at 560.153 kb on - strand, within BT0456at 560.153 kb on - strand, within BT0456at 560.169 kb on - strand, within BT0456at 560.261 kb on + strand, within BT0456at 560.338 kb on - strand, within BT0456at 560.423 kb on - strand, within BT0456at 560.464 kb on - strand, within BT0456at 560.566 kb on - strand, within BT0456at 560.566 kb on - strand, within BT0456at 560.567 kb on + strand, within BT0456at 560.568 kb on - strand, within BT0456at 560.571 kb on + strand, within BT0456at 560.616 kb on - strand, within BT0456at 560.633 kb on - strand, within BT0456at 560.689 kb on - strand, within BT0456at 560.689 kb on - strand, within BT0456at 560.695 kb on - strand, within BT0456at 560.700 kb on + strand, within BT0456at 560.862 kb on - strand, within BT0456at 560.943 kb on - strandat 561.002 kb on - strandat 561.031 kb on + strandat 561.108 kb on - strandat 561.126 kb on + strandat 561.152 kb on - strandat 561.215 kb on + strandat 561.242 kb on - strandat 561.347 kb on + strand, within BT0457at 561.348 kb on - strand, within BT0457at 561.394 kb on + strandat 561.424 kb on + strand, within BT0457at 561.425 kb on - strandat 561.539 kb on - strand, within BT0457at 561.539 kb on - strand, within BT0457at 561.539 kb on - strand, within BT0457at 561.539 kb on - strand, within BT0457at 561.700 kb on - strand, within BT0457at 561.724 kb on + strand, within BT0457at 561.744 kb on - strand, within BT0457at 561.793 kb on + strand, within BT0457at 561.871 kb on - strand, within BT0457at 561.961 kb on + strand, within BT0457

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Ciprofloxacin Hydrochloride 0.025 mM
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558,112 + BT0455 0.40 +0.1
558,113 - BT0455 0.40 -2.2
558,113 - BT0455 0.40 -0.7
558,124 + BT0455 0.41 -2.2
558,127 - BT0455 0.41 -0.8
558,129 + BT0455 0.41 -1.4
558,130 - BT0455 0.41 -0.4
558,130 - BT0455 0.41 -0.9
558,152 - BT0455 0.43 +1.6
558,156 - BT0455 0.43 -1.6
558,276 + BT0455 0.50 -0.5
558,277 - BT0455 0.50 +0.6
558,426 + BT0455 0.59 +0.1
558,451 - BT0455 0.61 -0.4
558,595 - BT0455 0.70 -0.4
558,595 - BT0455 0.70 -0.9
558,659 + BT0455 0.74 -1.7
558,798 - BT0455 0.82 -1.5
558,802 - BT0455 0.82 -0.5
558,835 - BT0455 0.84 -2.4
558,847 - BT0455 0.85 -0.4
558,852 + BT0455 0.85 +2.6
558,898 - BT0455 0.88 -0.6
558,907 - BT0455 0.89 -0.4
558,985 - -0.4
559,138 - +0.6
559,139 + -0.4
559,142 - +0.3
559,142 - +0.6
559,284 - -0.3
559,311 - BT0456 0.11 +0.7
559,319 - BT0456 0.12 -0.3
559,345 + BT0456 0.13 -0.3
559,345 + BT0456 0.13 -0.3
559,411 + BT0456 0.16 +1.7
559,447 + BT0456 0.18 -1.7
559,448 - BT0456 0.18 +0.7
559,497 - BT0456 0.20 +1.7
559,499 + BT0456 0.21 -1.3
559,547 - BT0456 0.23 -1.9
559,558 - BT0456 0.23 +0.7
559,723 - BT0456 0.32 +1.2
559,761 - BT0456 0.34 +2.1
559,923 - BT0456 0.42 -0.3
559,981 - BT0456 0.44 +0.7
560,032 - BT0456 0.47 +0.2
560,153 - BT0456 0.53 +0.7
560,153 - BT0456 0.53 +0.7
560,169 - BT0456 0.54 -0.3
560,261 + BT0456 0.58 -2.3
560,338 - BT0456 0.62 +0.7
560,423 - BT0456 0.66 +0.7
560,464 - BT0456 0.68 -0.5
560,566 - BT0456 0.74 -1.3
560,566 - BT0456 0.74 -0.3
560,567 + BT0456 0.74 +0.7
560,568 - BT0456 0.74 -0.3
560,571 + BT0456 0.74 +0.7
560,616 - BT0456 0.76 -0.3
560,633 - BT0456 0.77 -0.5
560,689 - BT0456 0.80 -1.3
560,689 - BT0456 0.80 -1.3
560,695 - BT0456 0.80 -1.3
560,700 + BT0456 0.80 +2.2
560,862 - BT0456 0.88 +0.7
560,943 - -1.2
561,002 - -0.9
561,031 + -0.9
561,108 - -0.8
561,126 + +0.7
561,152 - -0.9
561,215 + +0.7
561,242 - -1.7
561,347 + BT0457 0.11 +0.7
561,348 - BT0457 0.11 -0.3
561,394 + +0.7
561,424 + BT0457 0.15 +0.7
561,425 - +0.7
561,539 - BT0457 0.21 +0.7
561,539 - BT0457 0.21 -0.9
561,539 - BT0457 0.21 -2.0
561,539 - BT0457 0.21 -1.2
561,700 - BT0457 0.28 -2.3
561,724 + BT0457 0.30 -0.7
561,744 - BT0457 0.30 -0.1
561,793 + BT0457 0.33 -0.7
561,871 - BT0457 0.37 -1.3
561,961 + BT0457 0.41 -2.8

Or see this region's nucleotide sequence