Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36350

Experiment: Cytidine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (N)
3,801,247	+		PGA1_c36340	0.39	+0.5
3,801,322	-		PGA1_c36340	0.44	+0.5
3,801,390	+		PGA1_c36340	0.48	+0.3
3,801,390	+		PGA1_c36340	0.48	-0.1
3,801,408	-		PGA1_c36340	0.49	+0.3
3,801,428	+		PGA1_c36340	0.51	+1.2
3,801,458	+		PGA1_c36340	0.53	+0.3
3,801,466	-		PGA1_c36340	0.53	+0.9
3,801,480	+		PGA1_c36340	0.54	-0.3
3,801,493	+		PGA1_c36340	0.55	-0.2
3,801,513	-		PGA1_c36340	0.56	-1.5
3,801,559	-		PGA1_c36340	0.59	-1.1
3,801,559	-		PGA1_c36340	0.59	-0.7
3,801,589	-		PGA1_c36340	0.61	-0.1
3,801,604	-		PGA1_c36340	0.62	+0.5
3,801,606	+		PGA1_c36340	0.62	+0.6
3,801,606	+		PGA1_c36340	0.62	+0.6
3,801,606	+		PGA1_c36340	0.62	+0.7
3,801,606	+		PGA1_c36340	0.62	-0.3
3,801,606	+		PGA1_c36340	0.62	-0.2
3,801,606	+		PGA1_c36340	0.62	+0.1
3,801,607	+		PGA1_c36340	0.62	-0.1
3,801,614	-		PGA1_c36340	0.63	+0.2
3,801,614	-		PGA1_c36340	0.63	-0.6
3,801,614	-		PGA1_c36340	0.63	-0.6
3,801,615	-		PGA1_c36340	0.63	+0.6
3,801,615	-		PGA1_c36340	0.63	-1.7
3,801,632	+		PGA1_c36340	0.64	-0.1
3,801,663	+		PGA1_c36340	0.66	+0.0
3,801,663	+		PGA1_c36340	0.66	+0.3
3,801,673	+		PGA1_c36340	0.67	+0.1
3,801,681	-		PGA1_c36340	0.67	-1.6
3,801,681	-		PGA1_c36340	0.67	-0.6
3,801,710	-		PGA1_c36340	0.69	+0.6
3,801,710	-		PGA1_c36340	0.69	+0.4
3,801,715	-		PGA1_c36340	0.69	+0.9
3,801,843	+		PGA1_c36340	0.78	-0.2
3,801,843	+		PGA1_c36340	0.78	-0.6
3,801,918	+		PGA1_c36340	0.83	+1.6
3,801,926	-		PGA1_c36340	0.83	+0.4
3,801,960	+		PGA1_c36340	0.86	+0.7
3,802,017	+		PGA1_c36340	0.89	-1.9
3,802,030	-				-2.2
3,802,053	+				+0.5
3,802,121	-				-0.8
3,802,149	+				+0.0
3,802,149	+				-0.7
3,802,157	-				+0.1
3,802,159	+				-0.2
3,802,208	-				+0.7
3,802,211	+				-0.6
3,802,403	+		PGA1_c36350	0.19	+1.3
3,802,403	+		PGA1_c36350	0.19	+0.0
3,802,403	+		PGA1_c36350	0.19	-0.5
3,802,423	+		PGA1_c36350	0.20	-1.1
3,802,437	-		PGA1_c36350	0.21	-0.1
3,802,460	+		PGA1_c36350	0.23	-0.6
3,802,538	-		PGA1_c36350	0.30	-0.9
3,802,572	+		PGA1_c36350	0.33	-0.2
3,802,628	+		PGA1_c36350	0.37	-0.6
3,802,633	+		PGA1_c36350	0.38	-0.3
3,802,645	+		PGA1_c36350	0.39	+0.7
3,802,675	+		PGA1_c36350	0.41	+0.4
3,802,704	-		PGA1_c36350	0.43	+0.2
3,802,764	+		PGA1_c36350	0.48	-1.0
3,802,806	+		PGA1_c36350	0.52	-0.1
3,802,814	-		PGA1_c36350	0.53	-0.7
3,802,876	-		PGA1_c36350	0.58	-0.0
3,802,947	+		PGA1_c36350	0.63	-1.1
3,802,957	-		PGA1_c36350	0.64	+0.3
3,802,989	-		PGA1_c36350	0.67	-0.8
3,803,008	+		PGA1_c36350	0.68	-0.2
3,803,045	-		PGA1_c36350	0.72	-0.1
3,803,068	+		PGA1_c36350	0.73	-0.3
3,803,092	+		PGA1_c36350	0.75	-0.8
3,803,100	-		PGA1_c36350	0.76	-1.0
3,803,170	-		PGA1_c36350	0.82	-0.2
3,803,186	+		PGA1_c36350	0.83	-0.3
3,803,186	+		PGA1_c36350	0.83	-0.3
3,803,191	+		PGA1_c36350	0.84	-0.0
3,803,191	+		PGA1_c36350	0.84	+1.2
3,803,194	-		PGA1_c36350	0.84	+0.3
3,803,194	-		PGA1_c36350	0.84	-0.5
3,803,194	-		PGA1_c36350	0.84	-0.4
3,803,199	-		PGA1_c36350	0.84	-0.6
3,803,199	-		PGA1_c36350	0.84	+0.5
3,803,199	-		PGA1_c36350	0.84	-1.0
3,803,199	-		PGA1_c36350	0.84	-0.0
3,803,199	-		PGA1_c36350	0.84	-0.1
3,803,220	-		PGA1_c36350	0.86	+0.2
3,803,255	+		PGA1_c36350	0.89	-0.4
3,803,255	+		PGA1_c36350	0.89	+0.3
3,803,255	+		PGA1_c36350	0.89	+0.4
3,803,260	+		PGA1_c36350	0.89	-0.2
3,803,263	-		PGA1_c36350	0.89	-1.1
3,803,283	+				+0.8
3,803,316	+				+0.7
3,803,330	-				-0.7
3,803,359	+				+2.0
3,803,359	+				+0.6
3,803,499	+				+0.2
3,803,504	+				-0.3
3,803,504	+				+0.6
3,803,507	-				-0.3
3,803,507	-				+1.6
3,803,507	-				-0.8
3,803,507	-				-0.6
3,803,538	-				+0.2
3,803,618	+		PGA1_c36360	0.11	-0.4
3,803,692	+		PGA1_c36360	0.17	-0.5
3,803,704	+		PGA1_c36360	0.17	-1.1
3,803,735	+		PGA1_c36360	0.20	+1.2
3,803,735	+		PGA1_c36360	0.20	-0.9
3,803,735	+		PGA1_c36360	0.20	+1.6
3,803,735	+		PGA1_c36360	0.20	-0.2
3,803,735	+		PGA1_c36360	0.20	+1.1
3,803,735	+		PGA1_c36360	0.20	-0.8
3,803,735	+		PGA1_c36360	0.20	-0.6
3,803,735	+		PGA1_c36360	0.20	-0.1
3,803,735	-		PGA1_c36360	0.20	+0.4
3,803,743	-		PGA1_c36360	0.20	+0.2
3,803,743	-		PGA1_c36360	0.20	+0.1
3,803,743	-		PGA1_c36360	0.20	-0.1
3,803,743	-		PGA1_c36360	0.20	-0.6
3,803,743	-		PGA1_c36360	0.20	+1.5
3,803,796	+		PGA1_c36360	0.24	+0.3
3,803,796	+		PGA1_c36360	0.24	+0.2
3,803,804	-		PGA1_c36360	0.25	-0.5
3,803,804	-		PGA1_c36360	0.25	-0.1
3,803,804	-		PGA1_c36360	0.25	-1.1
3,803,804	-		PGA1_c36360	0.25	+0.0
3,803,834	-		PGA1_c36360	0.27	-0.9
3,803,849	+		PGA1_c36360	0.28	-1.0
3,803,857	-		PGA1_c36360	0.29	-1.0
3,803,857	-		PGA1_c36360	0.29	+0.7
3,803,857	-		PGA1_c36360	0.29	+0.1
3,803,857	-		PGA1_c36360	0.29	+0.5
3,803,941	-		PGA1_c36360	0.35	-0.0
3,803,955	+		PGA1_c36360	0.36	+0.1
3,803,964	+		PGA1_c36360	0.36	-2.4
3,803,964	+		PGA1_c36360	0.36	+1.1
3,803,972	-		PGA1_c36360	0.37	+0.0
3,803,987	-		PGA1_c36360	0.38	-0.9
3,804,017	+		PGA1_c36360	0.40	+0.5
3,804,018	-		PGA1_c36360	0.40	+0.1
3,804,045	-		PGA1_c36360	0.42	-0.7
3,804,071	+		PGA1_c36360	0.44	-1.1
3,804,071	+		PGA1_c36360	0.44	+0.7
3,804,087	+		PGA1_c36360	0.45	-0.7
3,804,133	+		PGA1_c36360	0.49	-0.8
3,804,153	+		PGA1_c36360	0.50	-0.8
3,804,222	+		PGA1_c36360	0.55	-0.6
3,804,222	+		PGA1_c36360	0.55	-0.3
3,804,222	+		PGA1_c36360	0.55	-1.0
3,804,222	+		PGA1_c36360	0.55	+0.1
3,804,230	-		PGA1_c36360	0.56	+1.3
3,804,230	-		PGA1_c36360	0.56	+1.5
3,804,230	-		PGA1_c36360	0.56	+0.6
3,804,230	-		PGA1_c36360	0.56	-0.1
3,804,230	-		PGA1_c36360	0.56	+0.7
3,804,230	-		PGA1_c36360	0.56	+0.2
3,804,230	-		PGA1_c36360	0.56	+0.9
3,804,230	-		PGA1_c36360	0.56	+0.0
3,804,230	-		PGA1_c36360	0.56	+0.7
3,804,230	-		PGA1_c36360	0.56	-0.5
3,804,234	+		PGA1_c36360	0.56	-0.0
3,804,242	-		PGA1_c36360	0.57	-0.3
3,804,269	+		PGA1_c36360	0.59	+0.6
3,804,308	-		PGA1_c36360	0.62	+0.0
3,804,309	-		PGA1_c36360	0.62	+0.3
3,804,309	-		PGA1_c36360	0.62	-0.1
3,804,322	+		PGA1_c36360	0.63	+0.6
3,804,374	+		PGA1_c36360	0.66	-0.4