Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02900 and PGA1_c02910 are separated by 3 nucleotides PGA1_c02910 and PGA1_c02920 are separated by 15 nucleotides PGA1_c02920 and PGA1_c02930 overlap by 4 nucleotides PGA1_c02930 and PGA1_c02940 are separated by 77 nucleotides
PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739
_c02900
PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204
_c02910
PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534
_c02920
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.610 kb on + strand, within PGA1_c02900 at 280.618 kb on - strand, within PGA1_c02900 at 280.776 kb on - strand at 280.776 kb on - strand at 280.839 kb on + strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.913 kb on + strand, within PGA1_c02910 at 281.024 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.251 kb on - strand at 281.251 kb on - strand at 281.299 kb on + strand, within PGA1_c02920 at 281.322 kb on + strand, within PGA1_c02920 at 281.340 kb on - strand, within PGA1_c02920 at 281.385 kb on + strand, within PGA1_c02920 at 281.390 kb on + strand, within PGA1_c02920 at 281.411 kb on + strand, within PGA1_c02920 at 281.522 kb on - strand at 281.524 kb on + strand at 281.527 kb on - strand at 281.536 kb on + strand at 281.548 kb on + strand at 281.566 kb on - strand at 281.725 kb on - strand, within PGA1_c02930 at 281.857 kb on + strand, within PGA1_c02930 at 281.941 kb on + strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.998 kb on - strand, within PGA1_c02930 at 282.022 kb on - strand, within PGA1_c02930 at 282.031 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.297 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.416 kb on + strand, within PGA1_c02930 at 282.424 kb on - strand, within PGA1_c02930 at 282.536 kb on - strand, within PGA1_c02930 at 282.538 kb on + strand, within PGA1_c02930 at 282.596 kb on + strand, within PGA1_c02930 at 282.600 kb on + strand, within PGA1_c02930 at 282.744 kb on - strand, within PGA1_c02930 at 282.794 kb on - strand, within PGA1_c02930 at 282.856 kb on + strand, within PGA1_c02930 at 282.872 kb on - strand, within PGA1_c02930 at 282.966 kb on - strand, within PGA1_c02930 at 282.979 kb on - strand, within PGA1_c02930 at 283.227 kb on + strand, within PGA1_c02930 at 283.237 kb on + strand, within PGA1_c02930 at 283.243 kb on + strand, within PGA1_c02930 at 283.285 kb on + strand at 283.293 kb on - strand at 283.305 kb on + strand at 283.383 kb on - strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.464 kb on - strand at 283.464 kb on - strand at 283.488 kb on - strand at 283.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 280,610 + PGA1_c02900 0.47 +1.6 280,618 - PGA1_c02900 0.50 +1.4 280,776 - +0.5 280,776 - -1.0 280,839 + PGA1_c02910 0.21 +0.3 280,847 - PGA1_c02910 0.23 +1.0 280,847 - PGA1_c02910 0.23 -0.4 280,913 + PGA1_c02910 0.37 +2.0 281,024 + PGA1_c02910 0.61 +1.4 281,056 + PGA1_c02910 0.68 +0.2 281,056 + PGA1_c02910 0.68 -0.2 281,251 - -0.5 281,251 - +0.2 281,299 + PGA1_c02920 0.25 -0.6 281,322 + PGA1_c02920 0.32 +0.1 281,340 - PGA1_c02920 0.38 -1.8 281,385 + PGA1_c02920 0.52 -0.3 281,390 + PGA1_c02920 0.54 -2.8 281,411 + PGA1_c02920 0.61 -0.4 281,522 - -1.1 281,524 + -1.5 281,527 - +0.4 281,536 + -3.3 281,548 + -0.7 281,566 - +1.9 281,725 - PGA1_c02930 0.10 -2.4 281,857 + PGA1_c02930 0.17 -2.8 281,941 + PGA1_c02930 0.21 -0.3 281,993 - PGA1_c02930 0.24 -2.1 281,993 - PGA1_c02930 0.24 +0.7 281,998 - PGA1_c02930 0.24 -0.8 282,022 - PGA1_c02930 0.26 -0.8 282,031 + PGA1_c02930 0.26 -1.0 282,052 + PGA1_c02930 0.27 -3.2 282,052 + PGA1_c02930 0.27 -1.8 282,297 - PGA1_c02930 0.40 -1.8 282,370 - PGA1_c02930 0.44 +1.5 282,370 - PGA1_c02930 0.44 -3.1 282,370 - PGA1_c02930 0.44 -1.3 282,416 + PGA1_c02930 0.46 -3.4 282,424 - PGA1_c02930 0.47 -1.8 282,536 - PGA1_c02930 0.53 -2.2 282,538 + PGA1_c02930 0.53 -1.1 282,596 + PGA1_c02930 0.56 -2.1 282,600 + PGA1_c02930 0.56 -1.7 282,744 - PGA1_c02930 0.63 -1.7 282,794 - PGA1_c02930 0.66 -2.1 282,856 + PGA1_c02930 0.69 -1.5 282,872 - PGA1_c02930 0.70 -2.0 282,966 - PGA1_c02930 0.75 -1.1 282,979 - PGA1_c02930 0.76 -1.5 283,227 + PGA1_c02930 0.89 -2.0 283,237 + PGA1_c02930 0.89 -2.0 283,243 + PGA1_c02930 0.90 -1.2 283,285 + -2.6 283,293 - -1.3 283,305 + -2.8 283,383 - -2.0 283,456 + -1.9 283,456 + -1.2 283,456 + -1.7 283,456 + -0.9 283,464 - +0.6 283,464 - -1.6 283,488 - -0.7 283,490 + -0.8
Or see this region's nucleotide sequence