Experiment: Growth in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02586 and CCNA_02587 are separated by 26 nucleotides CCNA_02587 and CCNA_02588 are separated by 119 nucleotides
CCNA_02586: CCNA_02586 - phosphoribosylformylglycinamidine synthase II, at 2,734,094 to 2,736,313
_02586
CCNA_02587: CCNA_02587 - PAS-family sensor histidine kinase, at 2,736,340 to 2,738,157
_02587
CCNA_02588: CCNA_02588 - aminopeptidase, at 2,738,277 to 2,739,206
_02588
Position (kb)
2736
2737
2738
2739 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2735.394 kb on + strand at 2735.450 kb on + strand, within CCNA_02586 at 2735.453 kb on - strand, within CCNA_02586 at 2735.465 kb on + strand, within CCNA_02586 at 2735.481 kb on - strand, within CCNA_02586 at 2735.490 kb on + strand, within CCNA_02586 at 2735.562 kb on + strand, within CCNA_02586 at 2735.627 kb on + strand, within CCNA_02586 at 2735.658 kb on - strand, within CCNA_02586 at 2735.760 kb on + strand, within CCNA_02586 at 2735.778 kb on + strand, within CCNA_02586 at 2735.786 kb on - strand, within CCNA_02586 at 2735.795 kb on + strand, within CCNA_02586 at 2735.795 kb on + strand, within CCNA_02586 at 2735.823 kb on + strand, within CCNA_02586 at 2735.823 kb on + strand, within CCNA_02586 at 2735.852 kb on + strand, within CCNA_02586 at 2735.889 kb on + strand, within CCNA_02586 at 2735.957 kb on + strand, within CCNA_02586 at 2736.043 kb on - strand, within CCNA_02586 at 2736.068 kb on - strand, within CCNA_02586 at 2736.074 kb on + strand, within CCNA_02586 at 2736.093 kb on + strand at 2736.110 kb on + strand at 2736.238 kb on - strand at 2736.276 kb on - strand at 2736.315 kb on + strand at 2736.323 kb on - strand at 2736.323 kb on - strand at 2736.338 kb on + strand at 2736.346 kb on - strand at 2736.348 kb on + strand at 2736.365 kb on - strand at 2736.395 kb on + strand at 2736.442 kb on - strand at 2736.458 kb on + strand at 2736.466 kb on - strand at 2736.577 kb on - strand, within CCNA_02587 at 2736.625 kb on + strand, within CCNA_02587 at 2736.668 kb on + strand, within CCNA_02587 at 2736.681 kb on - strand, within CCNA_02587 at 2736.692 kb on + strand, within CCNA_02587 at 2736.697 kb on + strand, within CCNA_02587 at 2736.705 kb on - strand, within CCNA_02587 at 2736.705 kb on - strand, within CCNA_02587 at 2736.715 kb on + strand, within CCNA_02587 at 2736.811 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.883 kb on + strand, within CCNA_02587 at 2736.886 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.891 kb on - strand, within CCNA_02587 at 2736.934 kb on - strand, within CCNA_02587 at 2736.947 kb on - strand, within CCNA_02587 at 2736.960 kb on + strand, within CCNA_02587 at 2736.973 kb on + strand, within CCNA_02587 at 2736.981 kb on - strand, within CCNA_02587 at 2737.090 kb on + strand, within CCNA_02587 at 2737.105 kb on + strand, within CCNA_02587 at 2737.105 kb on + strand, within CCNA_02587 at 2737.110 kb on + strand, within CCNA_02587 at 2737.172 kb on + strand, within CCNA_02587 at 2737.172 kb on + strand, within CCNA_02587 at 2737.172 kb on + strand, within CCNA_02587 at 2737.178 kb on + strand, within CCNA_02587 at 2737.180 kb on - strand, within CCNA_02587 at 2737.180 kb on - strand, within CCNA_02587 at 2737.210 kb on + strand, within CCNA_02587 at 2737.251 kb on + strand, within CCNA_02587 at 2737.265 kb on + strand, within CCNA_02587 at 2737.273 kb on - strand, within CCNA_02587 at 2737.292 kb on + strand, within CCNA_02587 at 2737.314 kb on - strand, within CCNA_02587 at 2737.324 kb on + strand, within CCNA_02587 at 2737.329 kb on + strand, within CCNA_02587 at 2737.329 kb on + strand, within CCNA_02587 at 2737.337 kb on - strand, within CCNA_02587 at 2737.378 kb on + strand, within CCNA_02587 at 2737.378 kb on + strand, within CCNA_02587 at 2737.397 kb on - strand, within CCNA_02587 at 2737.498 kb on - strand, within CCNA_02587 at 2737.509 kb on - strand, within CCNA_02587 at 2737.575 kb on - strand, within CCNA_02587 at 2737.577 kb on + strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.580 kb on - strand, within CCNA_02587 at 2737.586 kb on - strand, within CCNA_02587 at 2737.592 kb on + strand, within CCNA_02587 at 2737.600 kb on - strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.610 kb on + strand, within CCNA_02587 at 2737.618 kb on - strand, within CCNA_02587 at 2737.618 kb on - strand, within CCNA_02587 at 2737.620 kb on + strand, within CCNA_02587 at 2737.634 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.656 kb on + strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.664 kb on - strand, within CCNA_02587 at 2737.677 kb on - strand, within CCNA_02587 at 2737.727 kb on + strand, within CCNA_02587 at 2737.727 kb on + strand, within CCNA_02587 at 2737.735 kb on - strand, within CCNA_02587 at 2737.744 kb on + strand, within CCNA_02587 at 2737.759 kb on - strand, within CCNA_02587 at 2737.761 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.778 kb on + strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.786 kb on - strand, within CCNA_02587 at 2737.792 kb on + strand, within CCNA_02587 at 2737.839 kb on + strand, within CCNA_02587 at 2737.862 kb on + strand, within CCNA_02587 at 2737.878 kb on - strand, within CCNA_02587 at 2737.919 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.925 kb on + strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.933 kb on - strand, within CCNA_02587 at 2737.940 kb on - strand, within CCNA_02587 at 2737.946 kb on + strand, within CCNA_02587 at 2738.050 kb on - strand at 2738.053 kb on - strand at 2738.069 kb on + strand at 2738.069 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.097 kb on + strand at 2738.105 kb on - strand at 2738.120 kb on + strand at 2738.120 kb on + strand at 2738.120 kb on + strand at 2738.128 kb on - strand at 2738.128 kb on - strand at 2738.173 kb on - strand at 2738.201 kb on + strand at 2738.209 kb on - strand at 2738.257 kb on - strand at 2738.269 kb on - strand at 2738.300 kb on - strand at 2738.334 kb on - strand at 2738.339 kb on - strand at 2738.341 kb on + strand at 2738.344 kb on - strand at 2738.344 kb on - strand at 2738.362 kb on + strand at 2738.370 kb on - strand, within CCNA_02588 at 2738.388 kb on + strand, within CCNA_02588 at 2738.403 kb on + strand, within CCNA_02588 at 2738.411 kb on - strand, within CCNA_02588 at 2738.418 kb on + strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.421 kb on - strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on + strand, within CCNA_02588 at 2738.493 kb on - strand, within CCNA_02588 at 2738.509 kb on + strand, within CCNA_02588 at 2738.665 kb on - strand, within CCNA_02588 at 2738.723 kb on + strand, within CCNA_02588 at 2738.728 kb on + strand, within CCNA_02588 at 2738.729 kb on - strand, within CCNA_02588 at 2738.736 kb on - strand, within CCNA_02588 at 2738.747 kb on + strand, within CCNA_02588 at 2738.763 kb on - strand, within CCNA_02588 at 2738.824 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.840 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.892 kb on - strand, within CCNA_02588 at 2738.913 kb on + strand, within CCNA_02588 at 2738.916 kb on - strand, within CCNA_02588 at 2738.975 kb on - strand, within CCNA_02588 at 2738.986 kb on - strand, within CCNA_02588 at 2739.144 kb on - strand at 2739.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in M5G remove 2,735,394 + -0.1 2,735,450 + CCNA_02586 0.61 -2.7 2,735,453 - CCNA_02586 0.61 -2.1 2,735,465 + CCNA_02586 0.62 -3.6 2,735,481 - CCNA_02586 0.62 -1.7 2,735,490 + CCNA_02586 0.63 -3.7 2,735,562 + CCNA_02586 0.66 -0.1 2,735,627 + CCNA_02586 0.69 -1.4 2,735,658 - CCNA_02586 0.70 -0.6 2,735,760 + CCNA_02586 0.75 -2.5 2,735,778 + CCNA_02586 0.76 -3.3 2,735,786 - CCNA_02586 0.76 -2.7 2,735,795 + CCNA_02586 0.77 -1.5 2,735,795 + CCNA_02586 0.77 -2.9 2,735,823 + CCNA_02586 0.78 -1.8 2,735,823 + CCNA_02586 0.78 -1.8 2,735,852 + CCNA_02586 0.79 -0.5 2,735,889 + CCNA_02586 0.81 -4.5 2,735,957 + CCNA_02586 0.84 -3.7 2,736,043 - CCNA_02586 0.88 -2.4 2,736,068 - CCNA_02586 0.89 -2.0 2,736,074 + CCNA_02586 0.89 -0.1 2,736,093 + +0.6 2,736,110 + +1.5 2,736,238 - -2.0 2,736,276 - -1.0 2,736,315 + +1.1 2,736,323 - +0.1 2,736,323 - +0.6 2,736,338 + +0.5 2,736,346 - +0.3 2,736,348 + -0.3 2,736,365 - +0.3 2,736,395 + +0.3 2,736,442 - -0.1 2,736,458 + +0.3 2,736,466 - +0.5 2,736,577 - CCNA_02587 0.13 +0.6 2,736,625 + CCNA_02587 0.16 -1.0 2,736,668 + CCNA_02587 0.18 -1.0 2,736,681 - CCNA_02587 0.19 +0.3 2,736,692 + CCNA_02587 0.19 +0.2 2,736,697 + CCNA_02587 0.20 -0.4 2,736,705 - CCNA_02587 0.20 -0.3 2,736,705 - CCNA_02587 0.20 +0.9 2,736,715 + CCNA_02587 0.21 -0.6 2,736,811 + CCNA_02587 0.26 +1.2 2,736,883 + CCNA_02587 0.30 -0.2 2,736,883 + CCNA_02587 0.30 -0.6 2,736,883 + CCNA_02587 0.30 -0.1 2,736,883 + CCNA_02587 0.30 -0.7 2,736,883 + CCNA_02587 0.30 +0.0 2,736,883 + CCNA_02587 0.30 -0.4 2,736,886 - CCNA_02587 0.30 -0.4 2,736,891 - CCNA_02587 0.30 -0.4 2,736,891 - CCNA_02587 0.30 -0.2 2,736,891 - CCNA_02587 0.30 +0.1 2,736,891 - CCNA_02587 0.30 +0.5 2,736,891 - CCNA_02587 0.30 +0.2 2,736,891 - CCNA_02587 0.30 +0.0 2,736,891 - CCNA_02587 0.30 -1.0 2,736,891 - CCNA_02587 0.30 -0.3 2,736,891 - CCNA_02587 0.30 +0.1 2,736,891 - CCNA_02587 0.30 -0.5 2,736,891 - CCNA_02587 0.30 +0.6 2,736,934 - CCNA_02587 0.33 +0.3 2,736,947 - CCNA_02587 0.33 +0.2 2,736,960 + CCNA_02587 0.34 -1.3 2,736,973 + CCNA_02587 0.35 +0.5 2,736,981 - CCNA_02587 0.35 +0.6 2,737,090 + CCNA_02587 0.41 -0.7 2,737,105 + CCNA_02587 0.42 +0.0 2,737,105 + CCNA_02587 0.42 -1.3 2,737,110 + CCNA_02587 0.42 -0.2 2,737,172 + CCNA_02587 0.46 -1.6 2,737,172 + CCNA_02587 0.46 +0.4 2,737,172 + CCNA_02587 0.46 -3.0 2,737,178 + CCNA_02587 0.46 -0.8 2,737,180 - CCNA_02587 0.46 -0.1 2,737,180 - CCNA_02587 0.46 +0.7 2,737,210 + CCNA_02587 0.48 -0.4 2,737,251 + CCNA_02587 0.50 -3.0 2,737,265 + CCNA_02587 0.51 +0.8 2,737,273 - CCNA_02587 0.51 -0.1 2,737,292 + CCNA_02587 0.52 +0.6 2,737,314 - CCNA_02587 0.54 +0.1 2,737,324 + CCNA_02587 0.54 +0.4 2,737,329 + CCNA_02587 0.54 +1.9 2,737,329 + CCNA_02587 0.54 -0.9 2,737,337 - CCNA_02587 0.55 +0.6 2,737,378 + CCNA_02587 0.57 +1.0 2,737,378 + CCNA_02587 0.57 +0.4 2,737,397 - CCNA_02587 0.58 +0.0 2,737,498 - CCNA_02587 0.64 -0.0 2,737,509 - CCNA_02587 0.64 +0.3 2,737,575 - CCNA_02587 0.68 -0.7 2,737,577 + CCNA_02587 0.68 -0.1 2,737,580 - CCNA_02587 0.68 +0.3 2,737,580 - CCNA_02587 0.68 -0.5 2,737,580 - CCNA_02587 0.68 -0.5 2,737,586 - CCNA_02587 0.69 -0.0 2,737,592 + CCNA_02587 0.69 +0.6 2,737,600 - CCNA_02587 0.69 +0.7 2,737,610 + CCNA_02587 0.70 +1.5 2,737,610 + CCNA_02587 0.70 +1.0 2,737,610 + CCNA_02587 0.70 +0.1 2,737,618 - CCNA_02587 0.70 -0.5 2,737,618 - CCNA_02587 0.70 +0.7 2,737,620 + CCNA_02587 0.70 -0.6 2,737,634 + CCNA_02587 0.71 -0.1 2,737,656 + CCNA_02587 0.72 -0.3 2,737,656 + CCNA_02587 0.72 -0.5 2,737,656 + CCNA_02587 0.72 +1.0 2,737,656 + CCNA_02587 0.72 +0.0 2,737,656 + CCNA_02587 0.72 +0.8 2,737,664 - CCNA_02587 0.73 +0.1 2,737,664 - CCNA_02587 0.73 -0.1 2,737,664 - CCNA_02587 0.73 +0.1 2,737,664 - CCNA_02587 0.73 -0.3 2,737,664 - CCNA_02587 0.73 +0.3 2,737,664 - CCNA_02587 0.73 -0.1 2,737,664 - CCNA_02587 0.73 -0.7 2,737,664 - CCNA_02587 0.73 -0.2 2,737,664 - CCNA_02587 0.73 +0.5 2,737,664 - CCNA_02587 0.73 -1.0 2,737,677 - CCNA_02587 0.74 -0.4 2,737,727 + CCNA_02587 0.76 -0.1 2,737,727 + CCNA_02587 0.76 +0.5 2,737,735 - CCNA_02587 0.77 -0.4 2,737,744 + CCNA_02587 0.77 -0.3 2,737,759 - CCNA_02587 0.78 -0.5 2,737,761 + CCNA_02587 0.78 +0.3 2,737,778 + CCNA_02587 0.79 +1.1 2,737,778 + CCNA_02587 0.79 -1.3 2,737,778 + CCNA_02587 0.79 +1.6 2,737,778 + CCNA_02587 0.79 +0.2 2,737,786 - CCNA_02587 0.80 +0.5 2,737,786 - CCNA_02587 0.80 -0.4 2,737,786 - CCNA_02587 0.80 -0.2 2,737,792 + CCNA_02587 0.80 +0.1 2,737,839 + CCNA_02587 0.82 +0.2 2,737,862 + CCNA_02587 0.84 +0.4 2,737,878 - CCNA_02587 0.85 +0.3 2,737,919 + CCNA_02587 0.87 +1.3 2,737,925 + CCNA_02587 0.87 -0.8 2,737,925 + CCNA_02587 0.87 -0.4 2,737,925 + CCNA_02587 0.87 +0.0 2,737,925 + CCNA_02587 0.87 -0.2 2,737,925 + CCNA_02587 0.87 +0.7 2,737,933 - CCNA_02587 0.88 +0.5 2,737,933 - CCNA_02587 0.88 -0.3 2,737,933 - CCNA_02587 0.88 -0.3 2,737,933 - CCNA_02587 0.88 -1.0 2,737,933 - CCNA_02587 0.88 +0.9 2,737,940 - CCNA_02587 0.88 +0.0 2,737,946 + CCNA_02587 0.88 -0.8 2,738,050 - +0.3 2,738,053 - -0.1 2,738,069 + +0.9 2,738,069 + +0.2 2,738,097 + -0.6 2,738,097 + -0.3 2,738,097 + -0.5 2,738,097 + -0.1 2,738,105 - +0.2 2,738,120 + -0.7 2,738,120 + -1.4 2,738,120 + -1.1 2,738,128 - +0.2 2,738,128 - +0.8 2,738,173 - -0.2 2,738,201 + -0.2 2,738,209 - +0.6 2,738,257 - -0.4 2,738,269 - +0.3 2,738,300 - -0.4 2,738,334 - +0.4 2,738,339 - +1.0 2,738,341 + -0.4 2,738,344 - -0.0 2,738,344 - -1.0 2,738,362 + -0.7 2,738,370 - CCNA_02588 0.10 +0.8 2,738,388 + CCNA_02588 0.12 -1.5 2,738,403 + CCNA_02588 0.14 -1.2 2,738,411 - CCNA_02588 0.14 +0.9 2,738,418 + CCNA_02588 0.15 +0.4 2,738,421 - CCNA_02588 0.15 +0.4 2,738,421 - CCNA_02588 0.15 -0.3 2,738,493 + CCNA_02588 0.23 -0.9 2,738,493 + CCNA_02588 0.23 -1.1 2,738,493 - CCNA_02588 0.23 +0.5 2,738,509 + CCNA_02588 0.25 -0.9 2,738,665 - CCNA_02588 0.42 -0.2 2,738,723 + CCNA_02588 0.48 -0.5 2,738,728 + CCNA_02588 0.48 -0.6 2,738,729 - CCNA_02588 0.49 +0.3 2,738,736 - CCNA_02588 0.49 -0.2 2,738,747 + CCNA_02588 0.51 -0.4 2,738,763 - CCNA_02588 0.52 -1.1 2,738,824 - CCNA_02588 0.59 +0.2 2,738,840 - CCNA_02588 0.61 +0.3 2,738,840 - CCNA_02588 0.61 +0.1 2,738,840 - CCNA_02588 0.61 -0.3 2,738,892 - CCNA_02588 0.66 +0.2 2,738,892 - CCNA_02588 0.66 +0.4 2,738,892 - CCNA_02588 0.66 -0.0 2,738,913 + CCNA_02588 0.68 +0.7 2,738,916 - CCNA_02588 0.69 +0.3 2,738,975 - CCNA_02588 0.75 -0.7 2,738,986 - CCNA_02588 0.76 +0.1 2,739,144 - +0.0 2,739,149 - +0.2
Or see this region's nucleotide sequence