Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2242 and Dshi_2243 are separated by 89 nucleotides Dshi_2243 and Dshi_2244 are separated by 55 nucleotides Dshi_2244 and Dshi_2245 are separated by 261 nucleotides
Dshi_2242: Dshi_2242 - Histidinol dehydrogenase (RefSeq), at 2,365,495 to 2,366,820
_2242
Dshi_2243: Dshi_2243 - alpha/beta hydrolase fold (RefSeq), at 2,366,910 to 2,367,665
_2243
Dshi_2244: Dshi_2244 - DNA repair endonuclease mmcB (DUF1052) (from data) , at 2,367,721 to 2,368,161
_2244
Dshi_2245: Dshi_2245 - hypothetical protein (RefSeq), at 2,368,423 to 2,368,770
_2245
Position (kb)
2366
2367
2368 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2365.946 kb on - strand, within Dshi_2242 at 2365.960 kb on - strand, within Dshi_2242 at 2365.977 kb on - strand, within Dshi_2242 at 2366.004 kb on + strand, within Dshi_2242 at 2366.139 kb on - strand, within Dshi_2242 at 2366.167 kb on - strand, within Dshi_2242 at 2366.304 kb on - strand, within Dshi_2242 at 2366.314 kb on - strand, within Dshi_2242 at 2366.391 kb on - strand, within Dshi_2242 at 2366.457 kb on + strand, within Dshi_2242 at 2366.473 kb on + strand, within Dshi_2242 at 2366.499 kb on + strand, within Dshi_2242 at 2366.499 kb on + strand, within Dshi_2242 at 2366.524 kb on + strand, within Dshi_2242 at 2366.609 kb on + strand, within Dshi_2242 at 2366.618 kb on - strand, within Dshi_2242 at 2366.736 kb on - strand at 2366.803 kb on + strand at 2366.824 kb on - strand at 2366.839 kb on - strand at 2366.847 kb on - strand at 2366.930 kb on + strand at 2366.969 kb on + strand at 2366.989 kb on + strand, within Dshi_2243 at 2367.003 kb on + strand, within Dshi_2243 at 2367.007 kb on + strand, within Dshi_2243 at 2367.056 kb on - strand, within Dshi_2243 at 2367.106 kb on + strand, within Dshi_2243 at 2367.166 kb on - strand, within Dshi_2243 at 2367.171 kb on + strand, within Dshi_2243 at 2367.234 kb on - strand, within Dshi_2243 at 2367.234 kb on - strand, within Dshi_2243 at 2367.320 kb on + strand, within Dshi_2243 at 2367.328 kb on - strand, within Dshi_2243 at 2367.328 kb on - strand, within Dshi_2243 at 2367.347 kb on - strand, within Dshi_2243 at 2367.375 kb on - strand, within Dshi_2243 at 2367.399 kb on + strand, within Dshi_2243 at 2367.516 kb on - strand, within Dshi_2243 at 2367.516 kb on - strand, within Dshi_2243 at 2367.516 kb on - strand, within Dshi_2243 at 2367.521 kb on - strand, within Dshi_2243 at 2367.630 kb on + strand at 2367.661 kb on + strand at 2367.664 kb on - strand at 2367.754 kb on - strand at 2367.760 kb on + strand at 2367.765 kb on + strand, within Dshi_2244 at 2367.797 kb on - strand, within Dshi_2244 at 2367.819 kb on + strand, within Dshi_2244 at 2367.874 kb on - strand, within Dshi_2244 at 2367.879 kb on - strand, within Dshi_2244 at 2367.910 kb on + strand, within Dshi_2244 at 2367.945 kb on + strand, within Dshi_2244 at 2367.945 kb on + strand, within Dshi_2244 at 2367.945 kb on + strand, within Dshi_2244 at 2367.945 kb on + strand, within Dshi_2244 at 2367.953 kb on - strand, within Dshi_2244 at 2367.955 kb on + strand, within Dshi_2244 at 2367.958 kb on - strand, within Dshi_2244 at 2368.005 kb on + strand, within Dshi_2244 at 2368.013 kb on - strand, within Dshi_2244 at 2368.013 kb on - strand, within Dshi_2244 at 2368.013 kb on - strand, within Dshi_2244 at 2368.018 kb on - strand, within Dshi_2244 at 2368.020 kb on + strand, within Dshi_2244 at 2368.023 kb on - strand, within Dshi_2244 at 2368.038 kb on - strand, within Dshi_2244 at 2368.058 kb on + strand, within Dshi_2244 at 2368.080 kb on - strand, within Dshi_2244 at 2368.100 kb on - strand, within Dshi_2244 at 2368.102 kb on + strand, within Dshi_2244 at 2368.102 kb on + strand, within Dshi_2244 at 2368.115 kb on - strand, within Dshi_2244 at 2368.121 kb on + strand at 2368.160 kb on - strand at 2368.160 kb on - strand at 2368.176 kb on - strand at 2368.182 kb on - strand at 2368.195 kb on - strand at 2368.195 kb on - strand at 2368.200 kb on + strand at 2368.221 kb on + strand at 2368.221 kb on + strand at 2368.229 kb on - strand at 2368.229 kb on - strand at 2368.229 kb on - strand at 2368.229 kb on - strand at 2368.236 kb on - strand at 2368.238 kb on - strand at 2368.238 kb on - strand at 2368.238 kb on - strand at 2368.312 kb on + strand at 2368.317 kb on + strand at 2368.325 kb on - strand at 2368.325 kb on - strand at 2368.357 kb on - strand at 2368.408 kb on - strand at 2368.446 kb on + strand at 2368.446 kb on + strand at 2368.469 kb on - strand, within Dshi_2245 at 2368.478 kb on + strand, within Dshi_2245 at 2368.484 kb on - strand, within Dshi_2245 at 2368.487 kb on + strand, within Dshi_2245 at 2368.495 kb on - strand, within Dshi_2245 at 2368.520 kb on + strand, within Dshi_2245 at 2368.559 kb on - strand, within Dshi_2245 at 2368.594 kb on + strand, within Dshi_2245 at 2368.599 kb on - strand, within Dshi_2245 at 2368.602 kb on - strand, within Dshi_2245 at 2368.613 kb on - strand, within Dshi_2245 at 2368.630 kb on + strand, within Dshi_2245 at 2368.633 kb on - strand, within Dshi_2245 at 2368.637 kb on + strand, within Dshi_2245 at 2368.641 kb on + strand, within Dshi_2245 at 2368.641 kb on + strand, within Dshi_2245 at 2368.649 kb on - strand, within Dshi_2245 at 2368.660 kb on - strand, within Dshi_2245 at 2368.660 kb on - strand, within Dshi_2245 at 2368.664 kb on + strand, within Dshi_2245 at 2368.664 kb on + strand, within Dshi_2245 at 2368.664 kb on + strand, within Dshi_2245 at 2368.664 kb on - strand, within Dshi_2245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,365,946 - Dshi_2242 0.34 -2.4 2,365,960 - Dshi_2242 0.35 +0.1 2,365,977 - Dshi_2242 0.36 -0.2 2,366,004 + Dshi_2242 0.38 +0.7 2,366,139 - Dshi_2242 0.49 +0.3 2,366,167 - Dshi_2242 0.51 +0.7 2,366,304 - Dshi_2242 0.61 +0.7 2,366,314 - Dshi_2242 0.62 +1.2 2,366,391 - Dshi_2242 0.68 -0.1 2,366,457 + Dshi_2242 0.73 +0.3 2,366,473 + Dshi_2242 0.74 -0.8 2,366,499 + Dshi_2242 0.76 -0.9 2,366,499 + Dshi_2242 0.76 +0.3 2,366,524 + Dshi_2242 0.78 -0.2 2,366,609 + Dshi_2242 0.84 +0.3 2,366,618 - Dshi_2242 0.85 +0.4 2,366,736 - -0.3 2,366,803 + -0.7 2,366,824 - +0.2 2,366,839 - +0.4 2,366,847 - +0.2 2,366,930 + +0.5 2,366,969 + -0.4 2,366,989 + Dshi_2243 0.10 -0.2 2,367,003 + Dshi_2243 0.12 +0.9 2,367,007 + Dshi_2243 0.13 +1.7 2,367,056 - Dshi_2243 0.19 +0.2 2,367,106 + Dshi_2243 0.26 +1.3 2,367,166 - Dshi_2243 0.34 +0.5 2,367,171 + Dshi_2243 0.35 -0.2 2,367,234 - Dshi_2243 0.43 +0.3 2,367,234 - Dshi_2243 0.43 +0.5 2,367,320 + Dshi_2243 0.54 +0.4 2,367,328 - Dshi_2243 0.55 +0.2 2,367,328 - Dshi_2243 0.55 +0.3 2,367,347 - Dshi_2243 0.58 +0.1 2,367,375 - Dshi_2243 0.62 +0.8 2,367,399 + Dshi_2243 0.65 -0.4 2,367,516 - Dshi_2243 0.80 +1.2 2,367,516 - Dshi_2243 0.80 -0.6 2,367,516 - Dshi_2243 0.80 +0.1 2,367,521 - Dshi_2243 0.81 -0.2 2,367,630 + -0.4 2,367,661 + +0.2 2,367,664 - -0.2 2,367,754 - -0.1 2,367,760 + -0.3 2,367,765 + Dshi_2244 0.10 +0.4 2,367,797 - Dshi_2244 0.17 +1.7 2,367,819 + Dshi_2244 0.22 +0.3 2,367,874 - Dshi_2244 0.35 +0.2 2,367,879 - Dshi_2244 0.36 +0.4 2,367,910 + Dshi_2244 0.43 -0.5 2,367,945 + Dshi_2244 0.51 +0.5 2,367,945 + Dshi_2244 0.51 +0.7 2,367,945 + Dshi_2244 0.51 -0.3 2,367,945 + Dshi_2244 0.51 +0.8 2,367,953 - Dshi_2244 0.53 +1.7 2,367,955 + Dshi_2244 0.53 -1.0 2,367,958 - Dshi_2244 0.54 +0.4 2,368,005 + Dshi_2244 0.64 -0.5 2,368,013 - Dshi_2244 0.66 +0.4 2,368,013 - Dshi_2244 0.66 +0.8 2,368,013 - Dshi_2244 0.66 +0.1 2,368,018 - Dshi_2244 0.67 +0.2 2,368,020 + Dshi_2244 0.68 -0.7 2,368,023 - Dshi_2244 0.68 +0.8 2,368,038 - Dshi_2244 0.72 -0.2 2,368,058 + Dshi_2244 0.76 -0.6 2,368,080 - Dshi_2244 0.81 -0.2 2,368,100 - Dshi_2244 0.86 +0.1 2,368,102 + Dshi_2244 0.86 -0.6 2,368,102 + Dshi_2244 0.86 +0.7 2,368,115 - Dshi_2244 0.89 +0.1 2,368,121 + +0.7 2,368,160 - -0.1 2,368,160 - -0.1 2,368,176 - -0.3 2,368,182 - -0.0 2,368,195 - +0.3 2,368,195 - +0.3 2,368,200 + +1.0 2,368,221 + -0.3 2,368,221 + +1.1 2,368,229 - +1.7 2,368,229 - -0.0 2,368,229 - +1.1 2,368,229 - -2.3 2,368,236 - +2.1 2,368,238 - -0.7 2,368,238 - -0.1 2,368,238 - -0.7 2,368,312 + -0.2 2,368,317 + +0.7 2,368,325 - +0.5 2,368,325 - +0.5 2,368,357 - +0.4 2,368,408 - +0.8 2,368,446 + +0.2 2,368,446 + +0.2 2,368,469 - Dshi_2245 0.13 +0.2 2,368,478 + Dshi_2245 0.16 +0.0 2,368,484 - Dshi_2245 0.18 +0.8 2,368,487 + Dshi_2245 0.18 +0.1 2,368,495 - Dshi_2245 0.21 +0.3 2,368,520 + Dshi_2245 0.28 +0.5 2,368,559 - Dshi_2245 0.39 +0.3 2,368,594 + Dshi_2245 0.49 -0.2 2,368,599 - Dshi_2245 0.51 +0.3 2,368,602 - Dshi_2245 0.51 +0.6 2,368,613 - Dshi_2245 0.55 +0.1 2,368,630 + Dshi_2245 0.59 +0.9 2,368,633 - Dshi_2245 0.60 +0.3 2,368,637 + Dshi_2245 0.61 +0.3 2,368,641 + Dshi_2245 0.63 +0.4 2,368,641 + Dshi_2245 0.63 +2.7 2,368,649 - Dshi_2245 0.65 -0.0 2,368,660 - Dshi_2245 0.68 -0.1 2,368,660 - Dshi_2245 0.68 +1.5 2,368,664 + Dshi_2245 0.69 -0.0 2,368,664 + Dshi_2245 0.69 +0.1 2,368,664 + Dshi_2245 0.69 -0.0 2,368,664 - Dshi_2245 0.69 -0.4
Or see this region's nucleotide sequence