Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0372

Experiment: MoLS4 with L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0371 and DVU0372 are separated by 299 nucleotidesDVU0372 and DVU0373 are separated by 57 nucleotides DVU0371: DVU0371 - conserved hypothetical protein (TIGR), at 418,412 to 419,836 DVU0371 DVU0372: DVU0372 - membrane protein, putative (TIGR), at 420,136 to 420,828 DVU0372 DVU0373: DVU0373 - CoA-binding domain protein (TIGR), at 420,886 to 423,198 DVU0373 Position (kb) 420 421Strain fitness (log2 ratio) -1 0 1 2at 419.211 kb on - strand, within DVU0371at 419.238 kb on - strand, within DVU0371at 419.240 kb on + strand, within DVU0371at 419.353 kb on + strand, within DVU0371at 419.426 kb on + strand, within DVU0371at 419.426 kb on + strand, within DVU0371at 419.470 kb on + strand, within DVU0371at 419.485 kb on + strand, within DVU0371at 419.495 kb on + strand, within DVU0371at 419.579 kb on - strand, within DVU0371at 419.608 kb on - strand, within DVU0371at 419.651 kb on + strand, within DVU0371at 419.656 kb on - strand, within DVU0371at 419.659 kb on - strand, within DVU0371at 419.663 kb on + strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.671 kb on - strand, within DVU0371at 419.749 kb on - strandat 419.778 kb on - strandat 419.793 kb on - strandat 419.793 kb on - strandat 419.793 kb on - strandat 419.808 kb on - strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.935 kb on + strandat 419.945 kb on + strandat 419.950 kb on - strandat 419.952 kb on + strandat 419.953 kb on - strandat 419.953 kb on - strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.104 kb on + strandat 420.115 kb on + strandat 420.125 kb on + strandat 420.140 kb on - strandat 420.237 kb on - strand, within DVU0372at 420.280 kb on - strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.306 kb on + strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.314 kb on - strand, within DVU0372at 420.319 kb on - strand, within DVU0372at 420.397 kb on - strand, within DVU0372at 420.433 kb on + strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.441 kb on - strand, within DVU0372at 420.446 kb on - strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.468 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.483 kb on + strand, within DVU0372at 420.593 kb on + strand, within DVU0372at 420.599 kb on - strand, within DVU0372at 420.601 kb on - strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.605 kb on + strand, within DVU0372at 420.613 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.644 kb on - strand, within DVU0372at 420.660 kb on + strand, within DVU0372at 420.678 kb on - strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.706 kb on + strand, within DVU0372at 420.718 kb on + strand, within DVU0372at 420.726 kb on - strand, within DVU0372at 420.853 kb on - strandat 421.052 kb on - strandat 421.068 kb on - strandat 421.081 kb on + strandat 421.112 kb on + strandat 421.136 kb on + strand, within DVU0373at 421.168 kb on + strand, within DVU0373at 421.226 kb on + strand, within DVU0373at 421.234 kb on - strand, within DVU0373at 421.240 kb on - strand, within DVU0373at 421.293 kb on - strand, within DVU0373at 421.301 kb on + strand, within DVU0373at 421.630 kb on + strand, within DVU0373at 421.639 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.663 kb on + strand, within DVU0373at 421.735 kb on - strand, within DVU0373at 421.774 kb on + strand, within DVU0373at 421.782 kb on - strand, within DVU0373at 421.803 kb on - strand, within DVU0373at 421.814 kb on + strand, within DVU0373at 421.814 kb on + strand, within DVU0373at 421.824 kb on - strand, within DVU0373

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Phenylalanine (N)
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419,211 - DVU0371 0.56 -0.2
419,238 - DVU0371 0.58 -0.3
419,240 + DVU0371 0.58 -0.1
419,353 + DVU0371 0.66 -0.5
419,426 + DVU0371 0.71 -0.1
419,426 + DVU0371 0.71 -0.4
419,470 + DVU0371 0.74 +0.8
419,485 + DVU0371 0.75 +0.1
419,495 + DVU0371 0.76 -0.1
419,579 - DVU0371 0.82 +0.2
419,608 - DVU0371 0.84 +0.1
419,651 + DVU0371 0.87 -0.1
419,656 - DVU0371 0.87 -0.0
419,659 - DVU0371 0.88 -0.0
419,663 + DVU0371 0.88 -0.4
419,671 - DVU0371 0.88 -0.2
419,671 - DVU0371 0.88 +0.4
419,671 - DVU0371 0.88 +0.3
419,749 - -0.0
419,778 - +0.3
419,793 - -1.0
419,793 - +0.4
419,793 - -0.1
419,808 - -1.2
419,878 + +0.4
419,878 + +0.8
419,935 + -0.4
419,945 + +0.1
419,950 - +0.1
419,952 + +0.1
419,953 - -0.2
419,953 - -0.2
420,104 + -0.2
420,104 + -1.6
420,104 + -0.3
420,115 + -1.0
420,125 + -0.3
420,140 - -1.1
420,237 - DVU0372 0.15 -0.2
420,280 - DVU0372 0.21 -0.1
420,306 + DVU0372 0.25 -0.4
420,306 + DVU0372 0.25 +0.9
420,306 + DVU0372 0.25 +1.6
420,306 + DVU0372 0.25 +0.1
420,314 - DVU0372 0.26 +0.4
420,314 - DVU0372 0.26 -0.5
420,319 - DVU0372 0.26 +0.8
420,397 - DVU0372 0.38 +0.1
420,433 + DVU0372 0.43 +0.3
420,441 - DVU0372 0.44 +1.0
420,441 - DVU0372 0.44 +1.1
420,441 - DVU0372 0.44 -0.2
420,446 - DVU0372 0.45 +0.2
420,468 + DVU0372 0.48 -0.1
420,468 + DVU0372 0.48 +0.5
420,483 + DVU0372 0.50 +0.6
420,483 + DVU0372 0.50 +0.3
420,593 + DVU0372 0.66 -0.0
420,599 - DVU0372 0.67 +1.1
420,601 - DVU0372 0.67 -0.6
420,605 + DVU0372 0.68 -1.4
420,605 + DVU0372 0.68 +0.6
420,613 - DVU0372 0.69 -0.7
420,644 - DVU0372 0.73 -0.3
420,644 - DVU0372 0.73 +0.3
420,660 + DVU0372 0.76 -0.1
420,678 - DVU0372 0.78 +1.7
420,706 + DVU0372 0.82 +1.5
420,706 + DVU0372 0.82 -0.1
420,718 + DVU0372 0.84 +0.5
420,726 - DVU0372 0.85 +1.6
420,853 - +0.3
421,052 - +0.6
421,068 - -0.5
421,081 + -0.1
421,112 + -0.4
421,136 + DVU0373 0.11 +1.1
421,168 + DVU0373 0.12 +2.1
421,226 + DVU0373 0.15 +0.7
421,234 - DVU0373 0.15 -1.6
421,240 - DVU0373 0.15 +0.8
421,293 - DVU0373 0.18 -0.8
421,301 + DVU0373 0.18 +0.8
421,630 + DVU0373 0.32 -0.4
421,639 + DVU0373 0.33 -0.6
421,663 + DVU0373 0.34 +0.2
421,663 + DVU0373 0.34 -0.0
421,663 + DVU0373 0.34 -0.1
421,735 - DVU0373 0.37 -0.3
421,774 + DVU0373 0.38 -0.0
421,782 - DVU0373 0.39 +0.0
421,803 - DVU0373 0.40 -0.5
421,814 + DVU0373 0.40 -0.1
421,814 + DVU0373 0.40 +0.1
421,824 - DVU0373 0.41 +0.2

Or see this region's nucleotide sequence