Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05220

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05210 and PGA1_c05220 are separated by 7 nucleotidesPGA1_c05220 and PGA1_c05230 are separated by 111 nucleotides PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548 _c05210 PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674 _c05220 PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519 _c05230 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 514.562 kb on - strand, within PGA1_c05210at 514.564 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.592 kb on - strand, within PGA1_c05210at 514.613 kb on + strand, within PGA1_c05210at 514.621 kb on - strand, within PGA1_c05210at 514.628 kb on - strand, within PGA1_c05210at 514.656 kb on + strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.758 kb on - strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.775 kb on + strand, within PGA1_c05210at 514.778 kb on - strand, within PGA1_c05210at 514.800 kb on - strand, within PGA1_c05210at 514.850 kb on + strand, within PGA1_c05210at 514.857 kb on + strand, within PGA1_c05210at 514.891 kb on - strand, within PGA1_c05210at 514.931 kb on + strand, within PGA1_c05210at 514.962 kb on - strand, within PGA1_c05210at 514.974 kb on + strand, within PGA1_c05210at 515.029 kb on - strand, within PGA1_c05210at 515.069 kb on + strand, within PGA1_c05210at 515.195 kb on + strand, within PGA1_c05210at 515.197 kb on + strand, within PGA1_c05210at 515.203 kb on - strand, within PGA1_c05210at 515.223 kb on + strand, within PGA1_c05210at 515.226 kb on - strand, within PGA1_c05210at 515.231 kb on - strand, within PGA1_c05210at 515.277 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.311 kb on + strand, within PGA1_c05210at 515.398 kb on - strand, within PGA1_c05210at 515.431 kb on + strand, within PGA1_c05210at 515.445 kb on + strandat 515.446 kb on + strandat 515.499 kb on - strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.516 kb on + strandat 515.533 kb on + strandat 515.554 kb on - strandat 515.614 kb on + strandat 515.633 kb on + strandat 515.642 kb on + strandat 515.719 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.747 kb on + strand, within PGA1_c05220at 515.750 kb on - strand, within PGA1_c05220at 515.800 kb on + strand, within PGA1_c05220at 515.862 kb on + strand, within PGA1_c05220at 515.870 kb on - strand, within PGA1_c05220at 515.882 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.948 kb on + strand, within PGA1_c05220at 515.953 kb on + strand, within PGA1_c05220at 515.956 kb on - strand, within PGA1_c05220at 516.004 kb on + strand, within PGA1_c05220at 516.010 kb on + strand, within PGA1_c05220at 516.018 kb on - strand, within PGA1_c05220at 516.039 kb on - strand, within PGA1_c05220at 516.077 kb on + strand, within PGA1_c05220at 516.204 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.257 kb on + strand, within PGA1_c05220at 516.372 kb on - strand, within PGA1_c05220at 516.431 kb on + strand, within PGA1_c05220at 516.441 kb on - strand, within PGA1_c05220at 516.587 kb on + strandat 516.592 kb on + strandat 516.711 kb on - strandat 516.751 kb on + strandat 516.768 kb on + strandat 516.783 kb on + strandat 516.783 kb on - strandat 516.791 kb on - strandat 516.815 kb on + strandat 516.829 kb on + strandat 516.837 kb on - strandat 516.945 kb on - strandat 516.958 kb on - strandat 516.962 kb on + strand, within PGA1_c05230at 516.969 kb on + strand, within PGA1_c05230at 516.970 kb on - strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.033 kb on + strand, within PGA1_c05230at 517.041 kb on - strand, within PGA1_c05230at 517.060 kb on - strand, within PGA1_c05230at 517.070 kb on - strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.091 kb on + strand, within PGA1_c05230at 517.110 kb on - strand, within PGA1_c05230at 517.173 kb on + strand, within PGA1_c05230at 517.180 kb on - strand, within PGA1_c05230at 517.198 kb on - strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.220 kb on - strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.256 kb on - strand, within PGA1_c05230at 517.318 kb on + strand, within PGA1_c05230at 517.365 kb on + strand, within PGA1_c05230at 517.378 kb on - strand, within PGA1_c05230at 517.503 kb on - strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.513 kb on - strand, within PGA1_c05230at 517.590 kb on - strand, within PGA1_c05230

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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514,562 - PGA1_c05210 0.12 +1.4
514,564 + PGA1_c05210 0.12 +0.5
514,584 + PGA1_c05210 0.14 +0.3
514,584 + PGA1_c05210 0.14 +2.9
514,592 - PGA1_c05210 0.14 +0.8
514,613 + PGA1_c05210 0.16 +0.5
514,621 - PGA1_c05210 0.17 +1.0
514,628 - PGA1_c05210 0.17 +1.0
514,656 + PGA1_c05210 0.20 +1.0
514,720 - PGA1_c05210 0.26 +0.6
514,720 - PGA1_c05210 0.26 +0.3
514,720 - PGA1_c05210 0.26 +0.9
514,758 - PGA1_c05210 0.29 -0.1
514,770 + PGA1_c05210 0.30 +0.5
514,770 + PGA1_c05210 0.30 -0.8
514,775 + PGA1_c05210 0.31 +0.7
514,778 - PGA1_c05210 0.31 +1.0
514,800 - PGA1_c05210 0.33 +0.0
514,850 + PGA1_c05210 0.37 +1.8
514,857 + PGA1_c05210 0.38 +1.0
514,891 - PGA1_c05210 0.41 -0.2
514,931 + PGA1_c05210 0.45 +2.0
514,962 - PGA1_c05210 0.47 +1.5
514,974 + PGA1_c05210 0.48 +0.7
515,029 - PGA1_c05210 0.53 +1.8
515,069 + PGA1_c05210 0.57 +1.0
515,195 + PGA1_c05210 0.68 +0.8
515,197 + PGA1_c05210 0.68 +0.3
515,203 - PGA1_c05210 0.69 +1.1
515,223 + PGA1_c05210 0.71 +0.1
515,226 - PGA1_c05210 0.71 -0.1
515,231 - PGA1_c05210 0.72 +0.8
515,277 + PGA1_c05210 0.76 -0.2
515,301 + PGA1_c05210 0.78 +0.6
515,301 + PGA1_c05210 0.78 -0.7
515,309 - PGA1_c05210 0.78 +1.6
515,309 - PGA1_c05210 0.78 +0.4
515,311 + PGA1_c05210 0.79 +0.7
515,398 - PGA1_c05210 0.86 +1.6
515,431 + PGA1_c05210 0.89 -0.4
515,445 + -0.5
515,446 + +0.2
515,499 - +1.9
515,506 + +0.4
515,506 + -0.3
515,506 + +2.3
515,506 + -2.0
515,506 + +0.1
515,506 + +0.9
515,506 + -0.1
515,506 + +0.2
515,514 - +0.4
515,514 - -0.3
515,514 - +0.6
515,516 + -1.4
515,533 + +0.9
515,554 - -0.1
515,614 + -0.4
515,633 + -1.0
515,642 + +0.3
515,719 + PGA1_c05220 0.15 +0.9
515,729 + PGA1_c05220 0.15 +0.2
515,729 + PGA1_c05220 0.15 -0.1
515,747 + PGA1_c05220 0.17 +0.2
515,750 - PGA1_c05220 0.17 +0.9
515,800 + PGA1_c05220 0.22 +1.3
515,862 + PGA1_c05220 0.27 +0.4
515,870 - PGA1_c05220 0.28 +0.5
515,882 + PGA1_c05220 0.29 -0.3
515,887 + PGA1_c05220 0.30 -0.6
515,887 + PGA1_c05220 0.30 -0.8
515,887 + PGA1_c05220 0.30 +1.6
515,887 + PGA1_c05220 0.30 -1.2
515,887 + PGA1_c05220 0.30 -1.8
515,887 + PGA1_c05220 0.30 +0.5
515,895 - PGA1_c05220 0.30 -0.8
515,895 - PGA1_c05220 0.30 -0.4
515,948 + PGA1_c05220 0.35 +0.9
515,953 + PGA1_c05220 0.35 +0.2
515,956 - PGA1_c05220 0.36 +0.5
516,004 + PGA1_c05220 0.40 +0.6
516,010 + PGA1_c05220 0.41 +0.1
516,018 - PGA1_c05220 0.41 +1.3
516,039 - PGA1_c05220 0.43 +1.9
516,077 + PGA1_c05220 0.47 +0.1
516,204 - PGA1_c05220 0.58 +1.2
516,209 - PGA1_c05220 0.58 +1.2
516,209 - PGA1_c05220 0.58 -0.8
516,219 + PGA1_c05220 0.59 +0.2
516,219 + PGA1_c05220 0.59 -0.5
516,257 + PGA1_c05220 0.63 +0.4
516,372 - PGA1_c05220 0.73 +1.4
516,431 + PGA1_c05220 0.78 +1.2
516,441 - PGA1_c05220 0.79 +1.1
516,587 + -2.0
516,592 + +0.6
516,711 - -0.0
516,751 + -0.9
516,768 + -2.0
516,783 + -2.1
516,783 - -1.1
516,791 - +0.1
516,815 + -0.2
516,829 + -1.7
516,837 - -2.4
516,945 - +0.6
516,958 - -0.3
516,962 + PGA1_c05230 0.10 -2.8
516,969 + PGA1_c05230 0.11 -1.0
516,970 - PGA1_c05230 0.11 -2.5
517,002 + PGA1_c05230 0.12 -0.8
517,002 + PGA1_c05230 0.12 +0.4
517,033 + PGA1_c05230 0.14 -0.2
517,041 - PGA1_c05230 0.15 -0.5
517,060 - PGA1_c05230 0.16 +0.1
517,070 - PGA1_c05230 0.16 -1.4
517,073 + PGA1_c05230 0.17 +0.5
517,073 + PGA1_c05230 0.17 -0.2
517,073 + PGA1_c05230 0.17 +0.3
517,091 + PGA1_c05230 0.18 -0.3
517,110 - PGA1_c05230 0.19 -0.7
517,173 + PGA1_c05230 0.22 +0.7
517,180 - PGA1_c05230 0.23 +1.6
517,198 - PGA1_c05230 0.24 -1.3
517,212 + PGA1_c05230 0.25 -1.0
517,212 + PGA1_c05230 0.25 +1.2
517,220 - PGA1_c05230 0.25 -0.1
517,246 + PGA1_c05230 0.27 -1.0
517,246 + PGA1_c05230 0.27 +0.1
517,246 + PGA1_c05230 0.27 +1.0
517,246 + PGA1_c05230 0.27 -0.2
517,254 - PGA1_c05230 0.27 +0.2
517,254 - PGA1_c05230 0.27 +0.5
517,254 - PGA1_c05230 0.27 -1.6
517,254 - PGA1_c05230 0.27 -1.2
517,254 - PGA1_c05230 0.27 +1.0
517,256 - PGA1_c05230 0.27 -2.1
517,318 + PGA1_c05230 0.31 -1.0
517,365 + PGA1_c05230 0.33 +0.5
517,378 - PGA1_c05230 0.34 -1.5
517,503 - PGA1_c05230 0.41 +0.2
517,505 + PGA1_c05230 0.41 +1.3
517,505 + PGA1_c05230 0.41 -1.2
517,513 - PGA1_c05230 0.42 +0.9
517,590 - PGA1_c05230 0.46 +0.4

Or see this region's nucleotide sequence