Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04540

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04530 and PGA1_c04540 are separated by 140 nucleotidesPGA1_c04540 and PGA1_c04550 are separated by 29 nucleotides PGA1_c04530: PGA1_c04530 - ureidoglycolate lyase, at 445,434 to 446,282 _c04530 PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655 _c04540 PGA1_c04550: PGA1_c04550 - putative formaldehyde dehydrogenase, at 447,685 to 448,776 _c04550 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 445.537 kb on + strand, within PGA1_c04530at 445.542 kb on + strand, within PGA1_c04530at 445.545 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.618 kb on + strand, within PGA1_c04530at 445.662 kb on + strand, within PGA1_c04530at 445.665 kb on - strand, within PGA1_c04530at 445.670 kb on - strand, within PGA1_c04530at 445.804 kb on - strand, within PGA1_c04530at 445.809 kb on + strand, within PGA1_c04530at 445.888 kb on - strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.940 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.955 kb on - strand, within PGA1_c04530at 445.963 kb on + strand, within PGA1_c04530at 446.072 kb on - strand, within PGA1_c04530at 446.077 kb on + strand, within PGA1_c04530at 446.128 kb on + strand, within PGA1_c04530at 446.140 kb on - strand, within PGA1_c04530at 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.221 kb on + strandat 446.303 kb on + strandat 446.311 kb on - strandat 446.332 kb on + strandat 446.341 kb on + strandat 446.367 kb on + strandat 446.411 kb on - strandat 446.424 kb on - strandat 446.434 kb on - strandat 446.514 kb on - strandat 446.514 kb on - strandat 446.550 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.581 kb on - strand, within PGA1_c04540at 446.604 kb on + strand, within PGA1_c04540at 446.613 kb on + strand, within PGA1_c04540at 446.657 kb on - strand, within PGA1_c04540at 446.672 kb on + strand, within PGA1_c04540at 446.744 kb on + strand, within PGA1_c04540at 446.794 kb on - strand, within PGA1_c04540at 446.958 kb on + strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.043 kb on + strand, within PGA1_c04540at 447.061 kb on - strand, within PGA1_c04540at 447.169 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.222 kb on + strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.235 kb on + strand, within PGA1_c04540at 447.269 kb on + strand, within PGA1_c04540at 447.326 kb on + strand, within PGA1_c04540at 447.346 kb on + strand, within PGA1_c04540at 447.394 kb on + strand, within PGA1_c04540at 447.394 kb on + strand, within PGA1_c04540at 447.402 kb on - strand, within PGA1_c04540at 447.402 kb on - strand, within PGA1_c04540at 447.430 kb on + strand, within PGA1_c04540at 447.502 kb on - strand, within PGA1_c04540at 447.502 kb on - strand, within PGA1_c04540at 447.531 kb on + strand, within PGA1_c04540at 447.593 kb on + strandat 447.600 kb on + strandat 447.605 kb on + strandat 447.675 kb on + strandat 447.675 kb on + strandat 447.683 kb on + strandat 447.683 kb on - strandat 447.683 kb on - strandat 447.712 kb on - strandat 447.746 kb on + strandat 447.746 kb on + strandat 447.754 kb on - strandat 447.754 kb on - strandat 447.756 kb on + strandat 447.756 kb on + strandat 447.756 kb on + strandat 447.764 kb on - strandat 447.764 kb on - strandat 447.764 kb on - strandat 447.802 kb on + strand, within PGA1_c04550at 447.810 kb on + strand, within PGA1_c04550at 447.815 kb on - strand, within PGA1_c04550at 447.815 kb on - strand, within PGA1_c04550at 447.817 kb on + strand, within PGA1_c04550at 447.843 kb on + strand, within PGA1_c04550at 447.869 kb on - strand, within PGA1_c04550at 447.871 kb on + strand, within PGA1_c04550at 447.877 kb on + strand, within PGA1_c04550at 447.879 kb on - strand, within PGA1_c04550at 447.880 kb on - strand, within PGA1_c04550at 447.914 kb on - strand, within PGA1_c04550at 447.970 kb on - strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 448.002 kb on - strand, within PGA1_c04550at 448.025 kb on + strand, within PGA1_c04550at 448.054 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.183 kb on + strand, within PGA1_c04550at 448.219 kb on + strand, within PGA1_c04550at 448.224 kb on + strand, within PGA1_c04550at 448.248 kb on + strand, within PGA1_c04550at 448.256 kb on + strand, within PGA1_c04550at 448.271 kb on - strand, within PGA1_c04550at 448.294 kb on - strand, within PGA1_c04550at 448.297 kb on + strand, within PGA1_c04550at 448.302 kb on - strand, within PGA1_c04550at 448.382 kb on + strand, within PGA1_c04550at 448.412 kb on + strand, within PGA1_c04550at 448.448 kb on - strand, within PGA1_c04550at 448.521 kb on + strand, within PGA1_c04550at 448.531 kb on + strand, within PGA1_c04550at 448.535 kb on - strand, within PGA1_c04550at 448.541 kb on + strand, within PGA1_c04550at 448.546 kb on + strand, within PGA1_c04550at 448.573 kb on + strand, within PGA1_c04550at 448.607 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.640 kb on - strand, within PGA1_c04550

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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445,537 + PGA1_c04530 0.12 +0.2
445,542 + PGA1_c04530 0.13 +1.3
445,545 - PGA1_c04530 0.13 -0.6
445,550 - PGA1_c04530 0.14 -0.5
445,550 - PGA1_c04530 0.14 -0.7
445,550 - PGA1_c04530 0.14 +0.1
445,618 + PGA1_c04530 0.22 +0.1
445,662 + PGA1_c04530 0.27 +0.1
445,665 - PGA1_c04530 0.27 +0.6
445,670 - PGA1_c04530 0.28 -1.4
445,804 - PGA1_c04530 0.44 +0.1
445,809 + PGA1_c04530 0.44 -0.2
445,888 - PGA1_c04530 0.53 +0.5
445,890 + PGA1_c04530 0.54 +0.2
445,890 + PGA1_c04530 0.54 -1.2
445,940 + PGA1_c04530 0.60 +0.2
445,947 + PGA1_c04530 0.60 +0.4
445,947 + PGA1_c04530 0.60 -0.5
445,947 + PGA1_c04530 0.60 -0.1
445,947 + PGA1_c04530 0.60 -0.7
445,955 - PGA1_c04530 0.61 -2.0
445,963 + PGA1_c04530 0.62 -1.8
446,072 - PGA1_c04530 0.75 -1.2
446,077 + PGA1_c04530 0.76 +0.8
446,128 + PGA1_c04530 0.82 +1.6
446,140 - PGA1_c04530 0.83 +0.0
446,203 + -1.5
446,203 + +0.5
446,203 + -0.5
446,203 + -0.0
446,203 + -1.1
446,203 + +1.7
446,203 + +0.3
446,211 - -0.3
446,211 - -0.9
446,211 - -0.2
446,211 - -1.4
446,221 + +1.6
446,303 + -0.4
446,311 - -0.8
446,332 + +0.9
446,341 + +1.1
446,367 + -0.4
446,411 - -0.1
446,424 - +1.2
446,434 - -0.7
446,514 - -0.1
446,514 - +0.9
446,550 + PGA1_c04540 0.10 +0.4
446,563 + PGA1_c04540 0.11 +1.1
446,563 + PGA1_c04540 0.11 -0.3
446,571 - PGA1_c04540 0.12 +1.0
446,571 - PGA1_c04540 0.12 +0.5
446,581 - PGA1_c04540 0.13 +0.7
446,604 + PGA1_c04540 0.15 +0.0
446,613 + PGA1_c04540 0.15 -0.6
446,657 - PGA1_c04540 0.19 -0.4
446,672 + PGA1_c04540 0.20 +0.8
446,744 + PGA1_c04540 0.26 -1.5
446,794 - PGA1_c04540 0.30 -0.7
446,958 + PGA1_c04540 0.43 +0.5
446,961 - PGA1_c04540 0.44 +1.3
446,961 - PGA1_c04540 0.44 +0.8
447,038 + PGA1_c04540 0.50 +0.6
447,038 + PGA1_c04540 0.50 -0.8
447,043 + PGA1_c04540 0.50 -0.6
447,061 - PGA1_c04540 0.52 -0.4
447,169 + PGA1_c04540 0.61 -0.4
447,171 + PGA1_c04540 0.61 -0.1
447,171 + PGA1_c04540 0.61 +0.2
447,222 + PGA1_c04540 0.65 +0.6
447,222 - PGA1_c04540 0.65 +0.4
447,222 - PGA1_c04540 0.65 +0.3
447,235 + PGA1_c04540 0.66 +0.7
447,269 + PGA1_c04540 0.69 +1.1
447,326 + PGA1_c04540 0.73 +1.0
447,346 + PGA1_c04540 0.75 +0.2
447,394 + PGA1_c04540 0.79 -0.2
447,394 + PGA1_c04540 0.79 +0.6
447,402 - PGA1_c04540 0.79 -1.1
447,402 - PGA1_c04540 0.79 -0.9
447,430 + PGA1_c04540 0.82 -0.4
447,502 - PGA1_c04540 0.88 -0.5
447,502 - PGA1_c04540 0.88 +0.6
447,531 + PGA1_c04540 0.90 -0.0
447,593 + +0.2
447,600 + +0.1
447,605 + -0.6
447,675 + +0.2
447,675 + +0.6
447,683 + +0.5
447,683 - -1.1
447,683 - +0.2
447,712 - -0.3
447,746 + -0.1
447,746 + +0.3
447,754 - +0.8
447,754 - -0.9
447,756 + -0.7
447,756 + -0.1
447,756 + -0.7
447,764 - -0.0
447,764 - -0.2
447,764 - -2.7
447,802 + PGA1_c04550 0.11 +0.1
447,810 + PGA1_c04550 0.11 +1.2
447,815 - PGA1_c04550 0.12 +0.7
447,815 - PGA1_c04550 0.12 +0.1
447,817 + PGA1_c04550 0.12 -0.1
447,843 + PGA1_c04550 0.14 +0.9
447,869 - PGA1_c04550 0.17 +0.3
447,871 + PGA1_c04550 0.17 +0.0
447,877 + PGA1_c04550 0.18 +0.2
447,879 - PGA1_c04550 0.18 -0.7
447,880 - PGA1_c04550 0.18 +0.5
447,914 - PGA1_c04550 0.21 -0.1
447,970 - PGA1_c04550 0.26 +0.5
447,994 + PGA1_c04550 0.28 +0.9
447,994 + PGA1_c04550 0.28 +0.4
448,002 - PGA1_c04550 0.29 +0.8
448,025 + PGA1_c04550 0.31 +0.8
448,054 + PGA1_c04550 0.34 +0.8
448,084 + PGA1_c04550 0.37 +0.9
448,084 + PGA1_c04550 0.37 -0.2
448,084 + PGA1_c04550 0.37 -1.2
448,084 + PGA1_c04550 0.37 -0.2
448,084 + PGA1_c04550 0.37 +0.9
448,084 + PGA1_c04550 0.37 -1.4
448,084 + PGA1_c04550 0.37 -1.2
448,084 + PGA1_c04550 0.37 +0.2
448,084 + PGA1_c04550 0.37 -0.9
448,084 + PGA1_c04550 0.37 +0.6
448,084 + PGA1_c04550 0.37 -1.7
448,084 + PGA1_c04550 0.37 -0.2
448,084 + PGA1_c04550 0.37 +0.7
448,084 + PGA1_c04550 0.37 +0.2
448,092 - PGA1_c04550 0.37 -0.1
448,092 - PGA1_c04550 0.37 +0.3
448,092 - PGA1_c04550 0.37 -0.9
448,092 - PGA1_c04550 0.37 +0.1
448,092 - PGA1_c04550 0.37 -0.5
448,183 + PGA1_c04550 0.46 -0.2
448,219 + PGA1_c04550 0.49 -0.9
448,224 + PGA1_c04550 0.49 -0.4
448,248 + PGA1_c04550 0.52 -0.5
448,256 + PGA1_c04550 0.52 +1.2
448,271 - PGA1_c04550 0.54 -1.0
448,294 - PGA1_c04550 0.56 +1.1
448,297 + PGA1_c04550 0.56 -0.7
448,302 - PGA1_c04550 0.57 +0.9
448,382 + PGA1_c04550 0.64 +0.3
448,412 + PGA1_c04550 0.67 -0.9
448,448 - PGA1_c04550 0.70 -0.2
448,521 + PGA1_c04550 0.77 +0.1
448,531 + PGA1_c04550 0.77 +1.5
448,535 - PGA1_c04550 0.78 -0.6
448,541 + PGA1_c04550 0.78 -0.1
448,546 + PGA1_c04550 0.79 +0.3
448,573 + PGA1_c04550 0.81 +1.1
448,607 + PGA1_c04550 0.84 -0.2
448,632 + PGA1_c04550 0.87 -1.6
448,632 + PGA1_c04550 0.87 +1.4
448,640 - PGA1_c04550 0.87 -0.3

Or see this region's nucleotide sequence