Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03950

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03940 and PGA1_c03950 are separated by 128 nucleotidesPGA1_c03950 and PGA1_c03960 are separated by 0 nucleotides PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534 _c03940 PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757 _c03950 PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287 _c03960 Position (kb) 381 382 383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 380.665 kb on + strandat 380.665 kb on + strandat 380.716 kb on + strandat 380.716 kb on + strandat 380.729 kb on + strandat 380.777 kb on + strandat 380.783 kb on + strand, within PGA1_c03940at 380.803 kb on + strand, within PGA1_c03940at 380.861 kb on + strand, within PGA1_c03940at 380.960 kb on + strand, within PGA1_c03940at 380.960 kb on + strand, within PGA1_c03940at 380.968 kb on - strand, within PGA1_c03940at 380.980 kb on + strand, within PGA1_c03940at 381.110 kb on - strand, within PGA1_c03940at 381.179 kb on + strand, within PGA1_c03940at 381.183 kb on - strand, within PGA1_c03940at 381.188 kb on + strand, within PGA1_c03940at 381.276 kb on + strand, within PGA1_c03940at 381.290 kb on + strand, within PGA1_c03940at 381.290 kb on + strand, within PGA1_c03940at 381.298 kb on - strand, within PGA1_c03940at 381.314 kb on - strand, within PGA1_c03940at 381.326 kb on + strand, within PGA1_c03940at 381.339 kb on - strand, within PGA1_c03940at 381.352 kb on + strand, within PGA1_c03940at 381.391 kb on - strand, within PGA1_c03940at 381.514 kb on + strandat 381.560 kb on + strandat 381.577 kb on + strandat 381.585 kb on - strandat 381.639 kb on - strandat 381.651 kb on - strandat 381.681 kb on - strandat 381.683 kb on + strandat 381.691 kb on - strandat 381.717 kb on - strandat 381.717 kb on - strandat 381.741 kb on - strandat 381.854 kb on + strand, within PGA1_c03950at 381.881 kb on - strand, within PGA1_c03950at 381.895 kb on - strand, within PGA1_c03950at 381.961 kb on - strand, within PGA1_c03950at 382.012 kb on - strand, within PGA1_c03950at 382.250 kb on - strand, within PGA1_c03950at 382.314 kb on - strand, within PGA1_c03950at 382.345 kb on - strand, within PGA1_c03950at 382.359 kb on - strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.413 kb on - strand, within PGA1_c03950at 382.475 kb on + strand, within PGA1_c03950at 382.483 kb on - strand, within PGA1_c03950at 382.488 kb on + strand, within PGA1_c03950at 382.494 kb on + strand, within PGA1_c03950at 382.494 kb on + strand, within PGA1_c03950at 382.543 kb on + strand, within PGA1_c03950at 382.546 kb on - strand, within PGA1_c03950at 382.576 kb on + strand, within PGA1_c03950at 382.588 kb on + strand, within PGA1_c03950at 382.599 kb on + strand, within PGA1_c03950at 382.606 kb on + strand, within PGA1_c03950at 382.674 kb on + strandat 382.704 kb on - strandat 382.708 kb on - strandat 382.746 kb on + strandat 382.777 kb on + strandat 382.783 kb on + strandat 382.783 kb on + strandat 382.783 kb on + strandat 382.791 kb on - strandat 383.012 kb on + strand, within PGA1_c03960at 383.132 kb on + strand, within PGA1_c03960at 383.140 kb on - strand, within PGA1_c03960at 383.178 kb on + strand, within PGA1_c03960at 383.178 kb on + strand, within PGA1_c03960at 383.180 kb on + strand, within PGA1_c03960at 383.188 kb on - strand, within PGA1_c03960at 383.235 kb on + strand, within PGA1_c03960at 383.243 kb on - strand, within PGA1_c03960at 383.243 kb on - strand, within PGA1_c03960at 383.352 kb on + strand, within PGA1_c03960at 383.355 kb on - strand, within PGA1_c03960at 383.367 kb on - strand, within PGA1_c03960at 383.367 kb on - strand, within PGA1_c03960at 383.406 kb on + strand, within PGA1_c03960at 383.414 kb on - strand, within PGA1_c03960at 383.476 kb on + strand, within PGA1_c03960at 383.476 kb on + strand, within PGA1_c03960at 383.484 kb on - strand, within PGA1_c03960at 383.494 kb on + strand, within PGA1_c03960at 383.502 kb on - strand, within PGA1_c03960at 383.556 kb on + strand, within PGA1_c03960at 383.564 kb on + strand, within PGA1_c03960at 383.572 kb on - strand, within PGA1_c03960at 383.631 kb on + strand, within PGA1_c03960at 383.639 kb on - strand, within PGA1_c03960at 383.687 kb on + strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.697 kb on + strand, within PGA1_c03960at 383.730 kb on - strand, within PGA1_c03960at 383.733 kb on + strand, within PGA1_c03960at 383.748 kb on - strand, within PGA1_c03960at 383.756 kb on - strand, within PGA1_c03960

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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380,665 + +0.4
380,665 + -3.1
380,716 + +0.4
380,716 + -0.9
380,729 + -1.1
380,777 + -0.4
380,783 + PGA1_c03940 0.10 -1.4
380,803 + PGA1_c03940 0.13 +0.4
380,861 + PGA1_c03940 0.19 -1.6
380,960 + PGA1_c03940 0.31 -1.2
380,960 + PGA1_c03940 0.31 -2.4
380,968 - PGA1_c03940 0.32 +0.9
380,980 + PGA1_c03940 0.34 -0.3
381,110 - PGA1_c03940 0.49 +0.2
381,179 + PGA1_c03940 0.57 -0.0
381,183 - PGA1_c03940 0.58 -0.1
381,188 + PGA1_c03940 0.59 -1.2
381,276 + PGA1_c03940 0.69 -1.6
381,290 + PGA1_c03940 0.71 +0.4
381,290 + PGA1_c03940 0.71 -0.3
381,298 - PGA1_c03940 0.72 +0.3
381,314 - PGA1_c03940 0.74 -1.0
381,326 + PGA1_c03940 0.75 +0.6
381,339 - PGA1_c03940 0.77 -0.0
381,352 + PGA1_c03940 0.78 -0.6
381,391 - PGA1_c03940 0.83 -1.6
381,514 + -0.1
381,560 + -2.0
381,577 + +0.1
381,585 - -0.5
381,639 - -0.8
381,651 - -0.7
381,681 - -0.1
381,683 + -0.5
381,691 - -1.3
381,717 - -0.3
381,717 - -0.7
381,741 - -0.7
381,854 + PGA1_c03950 0.17 +0.0
381,881 - PGA1_c03950 0.20 -1.2
381,895 - PGA1_c03950 0.21 +0.3
381,961 - PGA1_c03950 0.27 -2.0
382,012 - PGA1_c03950 0.32 -0.2
382,250 - PGA1_c03950 0.54 +0.7
382,314 - PGA1_c03950 0.59 -0.2
382,345 - PGA1_c03950 0.62 +0.2
382,359 - PGA1_c03950 0.64 -1.8
382,390 + PGA1_c03950 0.66 -1.3
382,390 + PGA1_c03950 0.66 +1.7
382,390 + PGA1_c03950 0.66 -1.1
382,390 + PGA1_c03950 0.66 -0.7
382,390 + PGA1_c03950 0.66 +0.1
382,390 + PGA1_c03950 0.66 -0.1
382,390 + PGA1_c03950 0.66 -1.1
382,390 + PGA1_c03950 0.66 -0.5
382,390 + PGA1_c03950 0.66 -0.9
382,413 - PGA1_c03950 0.68 +0.1
382,475 + PGA1_c03950 0.74 -0.4
382,483 - PGA1_c03950 0.75 +0.1
382,488 + PGA1_c03950 0.75 +0.2
382,494 + PGA1_c03950 0.76 +0.4
382,494 + PGA1_c03950 0.76 -2.4
382,543 + PGA1_c03950 0.80 -1.0
382,546 - PGA1_c03950 0.81 -2.3
382,576 + PGA1_c03950 0.83 +0.1
382,588 + PGA1_c03950 0.84 -0.6
382,599 + PGA1_c03950 0.85 -1.1
382,606 + PGA1_c03950 0.86 -1.0
382,674 + -0.4
382,704 - -1.5
382,708 - -1.0
382,746 + -0.2
382,777 + -0.3
382,783 + -0.7
382,783 + -0.4
382,783 + -0.0
382,791 - -0.5
383,012 + PGA1_c03960 0.17 -1.7
383,132 + PGA1_c03960 0.24 +0.3
383,140 - PGA1_c03960 0.25 -1.8
383,178 + PGA1_c03960 0.27 -1.3
383,178 + PGA1_c03960 0.27 -0.2
383,180 + PGA1_c03960 0.28 -0.5
383,188 - PGA1_c03960 0.28 +0.4
383,235 + PGA1_c03960 0.31 -2.2
383,243 - PGA1_c03960 0.32 -1.5
383,243 - PGA1_c03960 0.32 -0.8
383,352 + PGA1_c03960 0.39 -3.0
383,355 - PGA1_c03960 0.39 -1.9
383,367 - PGA1_c03960 0.40 -1.3
383,367 - PGA1_c03960 0.40 -3.8
383,406 + PGA1_c03960 0.42 -0.1
383,414 - PGA1_c03960 0.43 +0.1
383,476 + PGA1_c03960 0.47 -0.7
383,476 + PGA1_c03960 0.47 -0.6
383,484 - PGA1_c03960 0.47 +0.2
383,494 + PGA1_c03960 0.48 -0.2
383,502 - PGA1_c03960 0.49 -0.9
383,556 + PGA1_c03960 0.52 -0.9
383,564 + PGA1_c03960 0.53 +1.2
383,572 - PGA1_c03960 0.53 -1.3
383,631 + PGA1_c03960 0.57 -1.3
383,639 - PGA1_c03960 0.58 -0.5
383,687 + PGA1_c03960 0.61 -1.0
383,695 - PGA1_c03960 0.61 -0.7
383,695 - PGA1_c03960 0.61 -2.0
383,695 - PGA1_c03960 0.61 -1.5
383,697 + PGA1_c03960 0.61 +1.3
383,730 - PGA1_c03960 0.64 +1.1
383,733 + PGA1_c03960 0.64 -0.0
383,748 - PGA1_c03960 0.65 +0.2
383,756 - PGA1_c03960 0.65 -0.9

Or see this region's nucleotide sequence