Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15980 and PGA1_c15990 are separated by 28 nucleotides PGA1_c15990 and PGA1_c16000 are separated by 48 nucleotides PGA1_c16000 and PGA1_c16010 are separated by 38 nucleotides
PGA1_c15980: PGA1_c15980 - 3-oxoacyl-[acyl-carrier-protein] synthase FabF, at 1,658,221 to 1,659,429
_c15980
PGA1_c15990: PGA1_c15990 - putative acyl carrier protein, at 1,659,458 to 1,659,712
_c15990
PGA1_c16000: PGA1_c16000 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD, at 1,659,761 to 1,660,834
_c16000
PGA1_c16010: PGA1_c16010 - putative L,D-transpeptidase, at 1,660,873 to 1,662,507
_c16010
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-1
0
1 at 1660.902 kb on - strand at 1660.919 kb on + strand at 1660.919 kb on + strand at 1660.919 kb on + strand at 1660.919 kb on + strand at 1660.927 kb on - strand at 1660.927 kb on - strand at 1660.962 kb on - strand at 1660.969 kb on + strand at 1660.970 kb on + strand at 1660.971 kb on + strand at 1661.033 kb on + strand at 1661.033 kb on + strand at 1661.041 kb on - strand, within PGA1_c16010 at 1661.154 kb on - strand, within PGA1_c16010 at 1661.252 kb on - strand, within PGA1_c16010 at 1661.253 kb on - strand, within PGA1_c16010 at 1661.433 kb on + strand, within PGA1_c16010 at 1661.441 kb on - strand, within PGA1_c16010 at 1661.444 kb on - strand, within PGA1_c16010 at 1661.544 kb on - strand, within PGA1_c16010 at 1661.612 kb on + strand, within PGA1_c16010 at 1661.651 kb on + strand, within PGA1_c16010 at 1661.743 kb on + strand, within PGA1_c16010 at 1661.743 kb on + strand, within PGA1_c16010 at 1661.743 kb on + strand, within PGA1_c16010 at 1661.751 kb on - strand, within PGA1_c16010 at 1661.751 kb on - strand, within PGA1_c16010 at 1661.827 kb on - strand, within PGA1_c16010
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,660,902 - -1.7 1,660,919 + -1.3 1,660,919 + +0.4 1,660,919 + -0.4 1,660,919 + -1.1 1,660,927 - +0.2 1,660,927 - -0.8 1,660,962 - +0.8 1,660,969 + +1.1 1,660,970 + +0.5 1,660,971 + +0.8 1,661,033 + +0.6 1,661,033 + -1.3 1,661,041 - PGA1_c16010 0.10 +0.2 1,661,154 - PGA1_c16010 0.17 +0.2 1,661,252 - PGA1_c16010 0.23 +0.6 1,661,253 - PGA1_c16010 0.23 -0.0 1,661,433 + PGA1_c16010 0.34 -0.3 1,661,441 - PGA1_c16010 0.35 -0.0 1,661,444 - PGA1_c16010 0.35 -0.8 1,661,544 - PGA1_c16010 0.41 +0.6 1,661,612 + PGA1_c16010 0.45 +0.2 1,661,651 + PGA1_c16010 0.48 +0.7 1,661,743 + PGA1_c16010 0.53 +1.5 1,661,743 + PGA1_c16010 0.53 +0.2 1,661,743 + PGA1_c16010 0.53 -0.5 1,661,751 - PGA1_c16010 0.54 +0.3 1,661,751 - PGA1_c16010 0.54 -1.3 1,661,827 - PGA1_c16010 0.58 +0.7
Or see this region's nucleotide sequence