Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16000

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15980 and PGA1_c15990 are separated by 28 nucleotidesPGA1_c15990 and PGA1_c16000 are separated by 48 nucleotidesPGA1_c16000 and PGA1_c16010 are separated by 38 nucleotides PGA1_c15980: PGA1_c15980 - 3-oxoacyl-[acyl-carrier-protein] synthase FabF, at 1,658,221 to 1,659,429 _c15980 PGA1_c15990: PGA1_c15990 - putative acyl carrier protein, at 1,659,458 to 1,659,712 _c15990 PGA1_c16000: PGA1_c16000 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD, at 1,659,761 to 1,660,834 _c16000 PGA1_c16010: PGA1_c16010 - putative L,D-transpeptidase, at 1,660,873 to 1,662,507 _c16010 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -1 0 1at 1660.902 kb on - strandat 1660.919 kb on + strandat 1660.919 kb on + strandat 1660.919 kb on + strandat 1660.919 kb on + strandat 1660.927 kb on - strandat 1660.927 kb on - strandat 1660.962 kb on - strandat 1660.969 kb on + strandat 1660.970 kb on + strandat 1660.971 kb on + strandat 1661.033 kb on + strandat 1661.033 kb on + strandat 1661.041 kb on - strand, within PGA1_c16010at 1661.154 kb on - strand, within PGA1_c16010at 1661.252 kb on - strand, within PGA1_c16010at 1661.253 kb on - strand, within PGA1_c16010at 1661.433 kb on + strand, within PGA1_c16010at 1661.441 kb on - strand, within PGA1_c16010at 1661.444 kb on - strand, within PGA1_c16010at 1661.544 kb on - strand, within PGA1_c16010at 1661.612 kb on + strand, within PGA1_c16010at 1661.651 kb on + strand, within PGA1_c16010at 1661.743 kb on + strand, within PGA1_c16010at 1661.743 kb on + strand, within PGA1_c16010at 1661.743 kb on + strand, within PGA1_c16010at 1661.751 kb on - strand, within PGA1_c16010at 1661.751 kb on - strand, within PGA1_c16010at 1661.827 kb on - strand, within PGA1_c16010

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,660,902 - -1.7
1,660,919 + -1.3
1,660,919 + +0.4
1,660,919 + -0.4
1,660,919 + -1.1
1,660,927 - +0.2
1,660,927 - -0.8
1,660,962 - +0.8
1,660,969 + +1.1
1,660,970 + +0.5
1,660,971 + +0.8
1,661,033 + +0.6
1,661,033 + -1.3
1,661,041 - PGA1_c16010 0.10 +0.2
1,661,154 - PGA1_c16010 0.17 +0.2
1,661,252 - PGA1_c16010 0.23 +0.6
1,661,253 - PGA1_c16010 0.23 -0.0
1,661,433 + PGA1_c16010 0.34 -0.3
1,661,441 - PGA1_c16010 0.35 -0.0
1,661,444 - PGA1_c16010 0.35 -0.8
1,661,544 - PGA1_c16010 0.41 +0.6
1,661,612 + PGA1_c16010 0.45 +0.2
1,661,651 + PGA1_c16010 0.48 +0.7
1,661,743 + PGA1_c16010 0.53 +1.5
1,661,743 + PGA1_c16010 0.53 +0.2
1,661,743 + PGA1_c16010 0.53 -0.5
1,661,751 - PGA1_c16010 0.54 +0.3
1,661,751 - PGA1_c16010 0.54 -1.3
1,661,827 - PGA1_c16010 0.58 +0.7

Or see this region's nucleotide sequence