Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01158

Experiment: PYE recovery after M5G phosphate starvation and 48hr streptomycin treatment in 96 well block

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE recovery after M5G phosphate starvation and 48hr streptomycin treatment in 96 well block
1,263,869	-		CCNA_01157	0.67	+0.2
1,263,880	+		CCNA_01157	0.68	-0.0
1,263,889	+		CCNA_01157	0.69	+0.2
1,263,940	-		CCNA_01157	0.72	-0.6
1,263,967	-		CCNA_01157	0.74	-0.3
1,263,967	-		CCNA_01157	0.74	+0.8
1,264,029	+		CCNA_01157	0.78	+0.4
1,264,039	-		CCNA_01157	0.79	-0.8
1,264,048	-		CCNA_01157	0.79	-0.0
1,264,056	+		CCNA_01157	0.80	-0.3
1,264,056	+		CCNA_01157	0.80	+0.2
1,264,056	+		CCNA_01157	0.80	-0.2
1,264,056	+		CCNA_01157	0.80	+0.5
1,264,056	+		CCNA_01157	0.80	+0.1
1,264,056	+		CCNA_01157	0.80	+0.1
1,264,062	+		CCNA_01157	0.80	+0.9
1,264,062	+		CCNA_01157	0.80	-0.1
1,264,062	+		CCNA_01157	0.80	+0.5
1,264,062	+		CCNA_01157	0.80	+0.4
1,264,062	+		CCNA_01157	0.80	-1.0
1,264,064	-		CCNA_01157	0.80	-2.1
1,264,064	-		CCNA_01157	0.80	-0.6
1,264,070	-		CCNA_01157	0.81	+2.9
1,264,070	-		CCNA_01157	0.81	+0.3
1,264,070	-		CCNA_01157	0.81	-0.7
1,264,091	-		CCNA_01157	0.82	-2.0
1,264,098	+		CCNA_01157	0.83	+0.4
1,264,098	+		CCNA_01157	0.83	+0.0
1,264,098	+		CCNA_01157	0.83	-0.1
1,264,106	-		CCNA_01157	0.83	-1.6
1,264,106	-		CCNA_01157	0.83	-1.5
1,264,117	+		CCNA_01157	0.84	+0.5
1,264,120	-		CCNA_01157	0.84	+1.5
1,264,120	-		CCNA_01157	0.84	-0.9
1,264,133	+		CCNA_01157	0.85	+1.2
1,264,133	+		CCNA_01157	0.85	-0.1
1,264,133	+		CCNA_01157	0.85	+0.1
1,264,133	+		CCNA_01157	0.85	+0.8
1,264,138	+		CCNA_01157	0.85	+0.1
1,264,138	+		CCNA_01157	0.85	+0.4
1,264,138	+		CCNA_01157	0.85	+0.7
1,264,146	-		CCNA_01157	0.86	+0.5
1,264,146	-		CCNA_01157	0.86	-0.5
1,264,188	-		CCNA_01157	0.89	-1.0
1,264,195	+		CCNA_01157	0.89	+0.7
1,264,209	+				+0.8
1,264,209	+				-0.3
1,264,210	-				+1.4
1,264,216	+				+0.4
1,264,224	-				-0.0
1,264,249	-				-0.5
1,264,260	+				-1.2
1,264,268	-				-0.1
1,264,307	+				-0.1
1,264,307	+				+0.3
1,264,307	+				-0.2
1,264,315	-				-0.8
1,264,337	+				-0.7
1,264,356	+				+0.6
1,264,356	+				-0.2
1,264,364	-				+0.3
1,264,399	+		CCNA_03999	0.10	+0.3
1,264,408	+		CCNA_03999	0.12	-0.1
1,264,427	+		CCNA_03999	0.17	+0.2
1,264,435	-		CCNA_03999	0.18	-1.5
1,264,453	+		CCNA_03999	0.23	-0.4
1,264,470	+		CCNA_03999	0.26	+0.6
1,264,475	+		CCNA_03999	0.27	-0.3
1,264,475	+		CCNA_03999	0.27	+0.1
1,264,475	+		CCNA_03999	0.27	+0.5
1,264,485	+		CCNA_03999	0.30	-0.2
1,264,485	+		CCNA_03999	0.30	+0.4
1,264,486	+		CCNA_03999	0.30	-0.0
1,264,497	+		CCNA_03999	0.32	+0.4
1,264,502	+		CCNA_03999	0.34	+0.6
1,264,502	+		CCNA_03999	0.34	-0.8
1,264,503	-		CCNA_03999	0.34	-0.9
1,264,510	-		CCNA_03999	0.35	-1.1
1,264,523	-		CCNA_03999	0.38	-0.8
1,264,538	+		CCNA_03999	0.42	+0.4
1,264,538	+		CCNA_03999	0.42	-0.4
1,264,539	+		CCNA_03999	0.42	+0.9
1,264,539	+		CCNA_03999	0.42	-0.1
1,264,540	+		CCNA_03999	0.42	+0.1
1,264,541	-		CCNA_03999	0.42	-0.6
1,264,546	-		CCNA_03999	0.43	+0.7
1,264,548	-		CCNA_03999	0.44	-0.4
1,264,563	+		CCNA_03999	0.47	-0.2
1,264,631	-		CCNA_03999	0.63	+0.4
1,264,633	+		CCNA_03999	0.63	+0.2
1,264,633	+		CCNA_03999	0.63	+0.7
1,264,633	+		CCNA_03999	0.63	-0.4
1,264,646	-		CCNA_03999	0.66	+0.2
1,264,650	+		CCNA_03999	0.67	+0.4
1,264,653	-		CCNA_03999	0.68	-1.0
1,264,738	-		CCNA_03999	0.87	-0.5
1,264,755	+				-0.3
1,264,755	+				+0.2
1,264,755	+				+0.1
1,264,755	+				+0.2
1,264,760	+				+0.2
1,264,763	-				-1.2
1,264,763	-				+1.3
1,264,775	+				+0.1
1,264,827	+				+0.6
1,264,856	+				+0.3
1,264,859	-				-0.5
1,264,859	-				+0.8
1,264,863	-				-1.4
1,264,873	+				+0.3
1,264,921	+				+0.1
1,264,929	-				-0.5
1,264,934	-				-0.3
1,264,934	-				-0.3
1,265,014	+		CCNA_01158	0.12	-1.0
1,265,027	-		CCNA_01158	0.12	-0.6
1,265,052	+		CCNA_01158	0.14	-1.4
1,265,060	-		CCNA_01158	0.14	-1.5
1,265,077	-		CCNA_01158	0.15	+0.4
1,265,077	-		CCNA_01158	0.15	-0.3
1,265,082	-		CCNA_01158	0.15	-1.2
1,265,082	-		CCNA_01158	0.15	-1.0
1,265,082	-		CCNA_01158	0.15	+1.0
1,265,118	-		CCNA_01158	0.17	+1.1
1,265,133	-		CCNA_01158	0.18	-1.0
1,265,137	+		CCNA_01158	0.18	-0.6
1,265,176	+		CCNA_01158	0.20	-0.5
1,265,202	+		CCNA_01158	0.21	-0.4
1,265,202	+		CCNA_01158	0.21	-0.3
1,265,210	-		CCNA_01158	0.22	+0.5
1,265,210	-		CCNA_01158	0.22	+1.2
1,265,212	+		CCNA_01158	0.22	+1.4
1,265,217	+		CCNA_01158	0.22	-0.3
1,265,220	-		CCNA_01158	0.22	-0.8
1,265,225	-		CCNA_01158	0.23	-0.4
1,265,252	+		CCNA_01158	0.24	-0.2
1,265,279	+		CCNA_01158	0.25	-0.0
1,265,288	+				+0.8
1,265,288	+		CCNA_01158	0.26	+1.0
1,265,289	+		CCNA_01158	0.26	-0.4
1,265,296	-		CCNA_01158	0.26	-0.2
1,265,349	-		CCNA_01158	0.29	-1.4
1,265,376	+		CCNA_01158	0.30	-0.6
1,265,376	+		CCNA_01158	0.30	+0.5
1,265,384	-		CCNA_01158	0.31	-0.2
1,265,385	+		CCNA_01158	0.31	+4.5
1,265,398	-		CCNA_01158	0.32	+0.4
1,265,403	-		CCNA_01158	0.32	+0.2
1,265,414	+		CCNA_01158	0.32	-0.4
1,265,429	-		CCNA_01158	0.33	+1.0
1,265,433	+		CCNA_01158	0.33	-0.4
1,265,466	+		CCNA_01158	0.35	-0.1
1,265,477	+		CCNA_01158	0.36	-0.0
1,265,546	+		CCNA_01158	0.39	-0.7
1,265,554	-		CCNA_01158	0.40	-0.5
1,265,570	+		CCNA_01158	0.41	+0.5
1,265,570	+		CCNA_01158	0.41	-0.1
1,265,575	+		CCNA_01158	0.41	-0.1
1,265,578	-		CCNA_01158	0.41	+0.2
1,265,578	-		CCNA_01158	0.41	-1.1
1,265,578	-		CCNA_01158	0.41	+1.0
1,265,578	-		CCNA_01158	0.41	+0.8
1,265,707	-		CCNA_01158	0.48	-2.5
1,265,722	+		CCNA_01158	0.48	-0.4
1,265,725	-		CCNA_01158	0.49	+0.5
1,265,733	+		CCNA_01158	0.49	+0.8
1,265,755	+		CCNA_01158	0.50	+0.7
1,265,755	+		CCNA_01158	0.50	+0.2
1,265,763	-		CCNA_01158	0.51	+1.5
1,265,766	+		CCNA_01158	0.51	-0.6
1,265,766	+		CCNA_01158	0.51	+0.0
1,265,771	+		CCNA_01158	0.51	+0.6
1,265,771	+		CCNA_01158	0.51	+1.3
1,265,771	+		CCNA_01158	0.51	-0.2
1,265,771	+		CCNA_01158	0.51	+0.0
1,265,771	+		CCNA_01158	0.51	+0.8
1,265,776	+		CCNA_01158	0.51	+0.6
1,265,776	+		CCNA_01158	0.51	-0.5
1,265,781	+		CCNA_01158	0.52	-0.4
1,265,781	+		CCNA_01158	0.52	+0.7
1,265,784	-				+1.9
1,265,792	+		CCNA_01158	0.52	+0.4
1,265,797	+		CCNA_01158	0.52	-0.6
1,265,820	+		CCNA_01158	0.54	+0.7
1,265,836	-		CCNA_01158	0.54	-0.9
1,265,873	-		CCNA_01158	0.56	-1.1
1,265,892	+		CCNA_01158	0.57	+0.7
1,265,943	-		CCNA_01158	0.60	-1.3
1,266,006	+		CCNA_01158	0.63	+0.3
1,266,006	+		CCNA_01158	0.63	-0.0
1,266,007	-		CCNA_01158	0.63	-0.2
1,266,014	-		CCNA_01158	0.64	+1.5
1,266,014	-		CCNA_01158	0.64	-1.3
1,266,014	-		CCNA_01158	0.64	-0.0
1,266,014	-		CCNA_01158	0.64	-1.5
1,266,014	-		CCNA_01158	0.64	+1.1
1,266,016	+		CCNA_01158	0.64	+0.1
1,266,023	+		CCNA_01158	0.64	-0.5
1,266,031	-		CCNA_01158	0.65	-0.1
1,266,031	-		CCNA_01158	0.65	+0.9
1,266,051	-		CCNA_01158	0.66	-0.0
1,266,051	-		CCNA_01158	0.66	-0.5
1,266,057	+		CCNA_01158	0.66	+0.2
1,266,062	+		CCNA_01158	0.66	+0.8
1,266,067	+		CCNA_01158	0.66	+0.9
1,266,067	+		CCNA_01158	0.66	-0.0
1,266,067	+		CCNA_01158	0.66	+0.2
1,266,075	-		CCNA_01158	0.67	-0.5
1,266,108	+		CCNA_01158	0.69	-0.9
1,266,108	+		CCNA_01158	0.69	+1.7
1,266,130	+		CCNA_01158	0.70	-0.1
1,266,130	+		CCNA_01158	0.70	+0.2
1,266,130	+		CCNA_01158	0.70	-0.5
1,266,131	+		CCNA_01158	0.70	-0.1
1,266,138	-		CCNA_01158	0.70	-1.7
1,266,138	-		CCNA_01158	0.70	-2.3
1,266,138	-		CCNA_01158	0.70	-0.7
1,266,138	-		CCNA_01158	0.70	-0.9
1,266,194	+		CCNA_01158	0.73	-0.6
1,266,199	+		CCNA_01158	0.73	-0.1
1,266,199	+		CCNA_01158	0.73	-2.2
1,266,199	+		CCNA_01158	0.73	+0.3
1,266,199	+		CCNA_01158	0.73	-0.3
1,266,199	+		CCNA_01158	0.73	+0.5
1,266,199	+		CCNA_01158	0.73	+0.4
1,266,199	+		CCNA_01158	0.73	-0.3
1,266,199	+		CCNA_01158	0.73	-0.3
1,266,199	+		CCNA_01158	0.73	-0.7
1,266,207	-		CCNA_01158	0.74	+0.3
1,266,207	-		CCNA_01158	0.74	-0.5
1,266,207	-		CCNA_01158	0.74	+0.1
1,266,207	-		CCNA_01158	0.74	-0.6
1,266,218	+		CCNA_01158	0.74	+0.2
1,266,248	+		CCNA_01158	0.76	-0.3
1,266,249	+		CCNA_01158	0.76	-0.2
1,266,281	-		CCNA_01158	0.78	-0.8
1,266,292	+		CCNA_01158	0.78	+0.5
1,266,298	-		CCNA_01158	0.79	-0.6
1,266,300	-		CCNA_01158	0.79	+0.8
1,266,310	+		CCNA_01158	0.79	+1.0
1,266,355	+		CCNA_01158	0.81	-0.2
1,266,356	+		CCNA_01158	0.82	-1.8
1,266,356	+		CCNA_01158	0.82	+0.8
1,266,364	-		CCNA_01158	0.82	-1.5
1,266,364	-		CCNA_01158	0.82	+0.2
1,266,364	-		CCNA_01158	0.82	-0.2
1,266,364	-		CCNA_01158	0.82	-0.3
1,266,364	-		CCNA_01158	0.82	+0.2
1,266,408	+		CCNA_01158	0.84	+0.1
1,266,421	+		CCNA_01158	0.85	+0.8
1,266,429	-		CCNA_01158	0.85	+1.5
1,266,429	-		CCNA_01158	0.85	-1.5
1,266,429	-		CCNA_01158	0.85	-1.0
1,266,449	+		CCNA_01158	0.86	-0.5
1,266,449	+		CCNA_01158	0.86	-1.1
1,266,457	-		CCNA_01158	0.87	-1.0
1,266,474	-		CCNA_01158	0.88	+0.3
1,266,485	-		CCNA_01158	0.88	-0.1
1,266,539	-				+2.5
1,266,545	-				-1.3
1,266,559	+				+3.9
1,266,564	+				-0.8
1,266,578	-				-1.2
1,266,585	+				+0.2
1,266,585	+				-0.4
1,266,622	+				+1.0
1,266,648	+				-0.7
1,266,648	+				-0.5
1,266,654	-				-0.9
1,266,656	-				-0.6
1,266,656	-				+1.1
1,266,656	-				+0.0
1,266,656	-				-0.5
1,266,663	+				+0.1
1,266,671	+				+0.3
1,266,678	+				-1.0
1,266,679	-				-3.0
1,266,714	+				+0.2
1,266,758	-				-2.2
1,266,758	-				+2.1
1,266,786	+				+0.6
1,266,794	-				-0.3
1,266,902	+				+0.3
1,266,902	+				-0.3
1,266,907	+				-3.0
1,266,954	+		CCNA_03946	0.82	-3.0
1,266,975	+				-1.2
1,266,975	+				-0.2
1,266,981	+				-2.1
1,267,001	-				-4.3
1,267,046	+				-1.3
1,267,064	+				-3.6
1,267,077	+				-2.4
1,267,077	+				-2.5
1,267,077	+				-2.5
1,267,085	+				-4.2
1,267,085	-				-0.5
1,267,104	-		CCNA_01159	0.11	-0.9
1,267,111	-		CCNA_01159	0.11	-2.4
1,267,118	+		CCNA_01159	0.12	-2.9
1,267,132	+		CCNA_01159	0.13	-3.4
1,267,151	-		CCNA_01159	0.14	-2.5
1,267,192	+		CCNA_01159	0.17	-3.5
1,267,195	-		CCNA_01159	0.17	-2.3
1,267,272	+		CCNA_01159	0.23	-0.9
1,267,280	+		CCNA_01159	0.24	-3.5
1,267,280	+		CCNA_01159	0.24	-3.1
1,267,280	+		CCNA_01159	0.24	-3.3
1,267,280	+		CCNA_01159	0.24	-3.3
1,267,280	-		CCNA_01159	0.24	-0.8
1,267,281	-		CCNA_01159	0.24	-1.0
1,267,288	-		CCNA_01159	0.24	-1.4
1,267,290	+		CCNA_01159	0.24	-2.3
1,267,313	-		CCNA_01159	0.26	-0.0
1,267,332	+		CCNA_01159	0.28	-3.5
1,267,332	+		CCNA_01159	0.28	-2.9
1,267,340	-		CCNA_01159	0.28	-0.9
1,267,368	+		CCNA_01159	0.30	-4.9
1,267,374	+		CCNA_01159	0.31	-2.7
1,267,384	+		CCNA_01159	0.31	-2.5
1,267,384	+		CCNA_01159	0.31	-3.9
1,267,411	+		CCNA_01159	0.33	-3.4
1,267,429	-		CCNA_01159	0.35	-2.2
1,267,447	-		CCNA_01159	0.36	-0.9
1,267,461	+		CCNA_01159	0.37	-2.8
1,267,464	+		CCNA_01159	0.37	-2.9
1,267,522	+		CCNA_01159	0.42	-2.9
1,267,553	+		CCNA_01159	0.44	-4.4
1,267,559	+		CCNA_01159	0.44	-2.2
1,267,561	-		CCNA_01159	0.44	-1.5
1,267,565	+		CCNA_01159	0.45	-0.9
1,267,565	+		CCNA_01159	0.45	-3.1
1,267,565	+		CCNA_01159	0.45	-0.8
1,267,565	+		CCNA_01159	0.45	-0.5
1,267,565	+		CCNA_01159	0.45	-0.8
1,267,565	+		CCNA_01159	0.45	-3.8
1,267,565	+		CCNA_01159	0.45	-2.0
1,267,573	-		CCNA_01159	0.45	-2.0
1,267,655	+		CCNA_01159	0.51	-1.7