Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26580 and BWI76_RS26585 are separated by 262 nucleotides BWI76_RS26585 and BWI76_RS26590 are separated by 87 nucleotides BWI76_RS26590 and BWI76_RS26595 are separated by 231 nucleotides
BWI76_RS26580: BWI76_RS26580 - universal stress protein A, at 5,502,383 to 5,502,820
_RS26580
BWI76_RS26585: BWI76_RS26585 - MFS transporter, at 5,503,083 to 5,504,555
_RS26585
BWI76_RS26590: BWI76_RS26590 - transcriptional regulator, at 5,504,643 to 5,505,146
_RS26590
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
Position (kb) 5503
5504
5505 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5502.085 kb on - strand at 5502.090 kb on + strand at 5502.161 kb on + strand at 5502.161 kb on + strand at 5502.283 kb on + strand at 5502.283 kb on + strand at 5502.291 kb on - strand at 5502.291 kb on - strand at 5502.344 kb on + strand at 5502.352 kb on - strand at 5502.381 kb on - strand at 5502.381 kb on - strand at 5502.381 kb on - strand at 5502.408 kb on + strand at 5502.408 kb on + strand at 5502.416 kb on - strand at 5502.416 kb on - strand at 5502.416 kb on - strand at 5502.469 kb on + strand, within BWI76_RS26580 at 5502.482 kb on - strand, within BWI76_RS26580 at 5502.485 kb on + strand, within BWI76_RS26580 at 5502.508 kb on - strand, within BWI76_RS26580 at 5502.515 kb on + strand, within BWI76_RS26580 at 5502.609 kb on - strand, within BWI76_RS26580 at 5502.627 kb on + strand, within BWI76_RS26580 at 5502.703 kb on - strand, within BWI76_RS26580 at 5502.739 kb on + strand, within BWI76_RS26580 at 5502.760 kb on + strand, within BWI76_RS26580 at 5502.770 kb on + strand, within BWI76_RS26580 at 5502.928 kb on + strand at 5502.946 kb on - strand at 5502.985 kb on + strand at 5502.993 kb on + strand at 5503.001 kb on - strand at 5503.010 kb on + strand at 5503.051 kb on - strand at 5503.071 kb on - strand at 5503.268 kb on + strand, within BWI76_RS26585 at 5503.277 kb on + strand, within BWI76_RS26585 at 5503.453 kb on - strand, within BWI76_RS26585 at 5503.606 kb on + strand, within BWI76_RS26585 at 5503.606 kb on + strand, within BWI76_RS26585 at 5503.614 kb on - strand, within BWI76_RS26585 at 5503.614 kb on - strand, within BWI76_RS26585 at 5503.692 kb on - strand, within BWI76_RS26585 at 5503.759 kb on - strand, within BWI76_RS26585 at 5503.894 kb on + strand, within BWI76_RS26585 at 5503.902 kb on - strand, within BWI76_RS26585 at 5503.924 kb on + strand, within BWI76_RS26585 at 5503.930 kb on - strand, within BWI76_RS26585 at 5504.044 kb on + strand, within BWI76_RS26585 at 5504.076 kb on + strand, within BWI76_RS26585 at 5504.078 kb on + strand, within BWI76_RS26585 at 5504.099 kb on + strand, within BWI76_RS26585 at 5504.106 kb on + strand, within BWI76_RS26585 at 5504.234 kb on + strand, within BWI76_RS26585 at 5504.251 kb on - strand, within BWI76_RS26585 at 5504.320 kb on - strand, within BWI76_RS26585 at 5504.583 kb on - strand at 5504.670 kb on - strand at 5504.741 kb on + strand, within BWI76_RS26590 at 5504.915 kb on + strand, within BWI76_RS26590 at 5504.930 kb on - strand, within BWI76_RS26590 at 5505.143 kb on - strand at 5505.380 kb on - strand at 5505.429 kb on + strand at 5505.437 kb on - strand at 5505.483 kb on - strand at 5505.499 kb on - strand, within BWI76_RS26595 at 5505.504 kb on - strand, within BWI76_RS26595
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,502,085 - -0.0 5,502,090 + +0.2 5,502,161 + +0.2 5,502,161 + -0.0 5,502,283 + +0.7 5,502,283 + -0.0 5,502,291 - +0.3 5,502,291 - +0.2 5,502,344 + -0.0 5,502,352 - +0.8 5,502,381 - +2.2 5,502,381 - +0.6 5,502,381 - +0.9 5,502,408 + +0.7 5,502,408 + +0.7 5,502,416 - +0.1 5,502,416 - -0.4 5,502,416 - +1.3 5,502,469 + BWI76_RS26580 0.20 +0.0 5,502,482 - BWI76_RS26580 0.23 -1.2 5,502,485 + BWI76_RS26580 0.23 +2.2 5,502,508 - BWI76_RS26580 0.29 +0.1 5,502,515 + BWI76_RS26580 0.30 +0.5 5,502,609 - BWI76_RS26580 0.52 -0.3 5,502,627 + BWI76_RS26580 0.56 +0.5 5,502,703 - BWI76_RS26580 0.73 +0.1 5,502,739 + BWI76_RS26580 0.81 +0.1 5,502,760 + BWI76_RS26580 0.86 +1.0 5,502,770 + BWI76_RS26580 0.88 +0.5 5,502,928 + +0.6 5,502,946 - -0.6 5,502,985 + +0.4 5,502,993 + -0.2 5,503,001 - -0.1 5,503,010 + +0.2 5,503,051 - +0.0 5,503,071 - +0.4 5,503,268 + BWI76_RS26585 0.13 +0.6 5,503,277 + BWI76_RS26585 0.13 +1.3 5,503,453 - BWI76_RS26585 0.25 +0.5 5,503,606 + BWI76_RS26585 0.36 -2.0 5,503,606 + BWI76_RS26585 0.36 +0.9 5,503,614 - BWI76_RS26585 0.36 -0.7 5,503,614 - BWI76_RS26585 0.36 +2.0 5,503,692 - BWI76_RS26585 0.41 -1.0 5,503,759 - BWI76_RS26585 0.46 +1.2 5,503,894 + BWI76_RS26585 0.55 +0.4 5,503,902 - BWI76_RS26585 0.56 -0.5 5,503,924 + BWI76_RS26585 0.57 +0.2 5,503,930 - BWI76_RS26585 0.58 +0.5 5,504,044 + BWI76_RS26585 0.65 +0.1 5,504,076 + BWI76_RS26585 0.67 +0.1 5,504,078 + BWI76_RS26585 0.68 -0.9 5,504,099 + BWI76_RS26585 0.69 -1.3 5,504,106 + BWI76_RS26585 0.69 +1.1 5,504,234 + BWI76_RS26585 0.78 +3.9 5,504,251 - BWI76_RS26585 0.79 -0.6 5,504,320 - BWI76_RS26585 0.84 +0.3 5,504,583 - -0.1 5,504,670 - -0.5 5,504,741 + BWI76_RS26590 0.19 -0.7 5,504,915 + BWI76_RS26590 0.54 +0.0 5,504,930 - BWI76_RS26590 0.57 -0.9 5,505,143 - +0.6 5,505,380 - -0.1 5,505,429 + -0.7 5,505,437 - -0.1 5,505,483 - +0.9 5,505,499 - BWI76_RS26595 0.10 -0.2 5,505,504 - BWI76_RS26595 0.10 +0.6
Or see this region's nucleotide sequence