Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24380

Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24375 and BWI76_RS24380 are separated by 30 nucleotidesBWI76_RS24380 and BWI76_RS24385 overlap by 1 nucleotidesBWI76_RS24385 and BWI76_RS24390 are separated by 24 nucleotides BWI76_RS24375: BWI76_RS24375 - DNA topoisomerase IV subunit B, at 5,080,927 to 5,082,822 _RS24375 BWI76_RS24380: BWI76_RS24380 - esterase YqiA, at 5,082,853 to 5,083,428 _RS24380 BWI76_RS24385: BWI76_RS24385 - phosphodiesterase, at 5,083,428 to 5,084,255 _RS24385 BWI76_RS24390: BWI76_RS24390 - hypothetical protein, at 5,084,280 to 5,084,702 _RS24390 Position (kb) 5082 5083 5084Strain fitness (log2 ratio) -1 0 1at 5083.137 kb on + strand, within BWI76_RS24380at 5083.179 kb on + strand, within BWI76_RS24380at 5083.187 kb on - strand, within BWI76_RS24380at 5083.298 kb on + strand, within BWI76_RS24380at 5083.306 kb on - strandat 5083.340 kb on - strand, within BWI76_RS24380at 5083.427 kb on - strandat 5083.522 kb on - strand, within BWI76_RS24385at 5083.556 kb on + strand, within BWI76_RS24385at 5083.578 kb on - strand, within BWI76_RS24385at 5083.578 kb on - strand, within BWI76_RS24385at 5083.578 kb on - strand, within BWI76_RS24385at 5083.658 kb on + strand, within BWI76_RS24385at 5083.726 kb on - strand, within BWI76_RS24385at 5083.778 kb on + strand, within BWI76_RS24385at 5083.849 kb on - strandat 5083.945 kb on + strand, within BWI76_RS24385at 5084.023 kb on + strand, within BWI76_RS24385at 5084.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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5,083,137 + BWI76_RS24380 0.49 -0.8
5,083,179 + BWI76_RS24380 0.57 -1.3
5,083,187 - BWI76_RS24380 0.58 -0.6
5,083,298 + BWI76_RS24380 0.77 -1.3
5,083,306 - +0.3
5,083,340 - BWI76_RS24380 0.85 -0.2
5,083,427 - -0.2
5,083,522 - BWI76_RS24385 0.11 -0.6
5,083,556 + BWI76_RS24385 0.15 +0.5
5,083,578 - BWI76_RS24385 0.18 -0.6
5,083,578 - BWI76_RS24385 0.18 +0.5
5,083,578 - BWI76_RS24385 0.18 +0.6
5,083,658 + BWI76_RS24385 0.28 -0.1
5,083,726 - BWI76_RS24385 0.36 +0.4
5,083,778 + BWI76_RS24385 0.42 -1.0
5,083,849 - +0.3
5,083,945 + BWI76_RS24385 0.62 -0.4
5,084,023 + BWI76_RS24385 0.72 -1.1
5,084,183 + -1.4

Or see this region's nucleotide sequence