Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06780 and BWI76_RS06785 are separated by 142 nucleotides BWI76_RS06785 and BWI76_RS06790 are separated by 130 nucleotides
BWI76_RS06780: BWI76_RS06780 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,422,012 to 1,423,205
_RS06780
BWI76_RS06785: BWI76_RS06785 - DNA-binding transcriptional repressor AcrR, at 1,423,348 to 1,423,998
_RS06785
BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470
_RS06790
Position (kb)
1423
1424 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1422.692 kb on - strand, within BWI76_RS06780 at 1422.782 kb on - strand, within BWI76_RS06780 at 1422.802 kb on + strand, within BWI76_RS06780 at 1422.810 kb on - strand, within BWI76_RS06780 at 1422.831 kb on - strand, within BWI76_RS06780 at 1422.985 kb on + strand, within BWI76_RS06780 at 1423.032 kb on + strand, within BWI76_RS06780 at 1423.034 kb on - strand, within BWI76_RS06780 at 1423.140 kb on - strand at 1423.142 kb on + strand at 1423.161 kb on + strand at 1423.430 kb on + strand, within BWI76_RS06785 at 1423.562 kb on - strand, within BWI76_RS06785 at 1423.660 kb on + strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.786 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.906 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.916 kb on - strand, within BWI76_RS06785 at 1423.976 kb on + strand at 1424.132 kb on - strand at 1424.132 kb on - strand at 1424.626 kb on + strand, within BWI76_RS06790 at 1424.780 kb on - strand, within BWI76_RS06790 at 1424.792 kb on - strand, within BWI76_RS06790 at 1424.951 kb on + strand, within BWI76_RS06790
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,422,692 - BWI76_RS06780 0.57 -3.4 1,422,782 - BWI76_RS06780 0.64 -2.2 1,422,802 + BWI76_RS06780 0.66 -2.1 1,422,810 - BWI76_RS06780 0.67 -5.1 1,422,831 - BWI76_RS06780 0.69 -4.0 1,422,985 + BWI76_RS06780 0.81 -2.8 1,423,032 + BWI76_RS06780 0.85 -3.1 1,423,034 - BWI76_RS06780 0.86 -3.4 1,423,140 - -2.9 1,423,142 + -3.4 1,423,161 + -1.7 1,423,430 + BWI76_RS06785 0.13 +1.6 1,423,562 - BWI76_RS06785 0.33 +2.1 1,423,660 + BWI76_RS06785 0.48 +1.9 1,423,786 - BWI76_RS06785 0.67 +0.5 1,423,786 - BWI76_RS06785 0.67 +2.0 1,423,906 - BWI76_RS06785 0.86 +2.0 1,423,906 - BWI76_RS06785 0.86 +1.2 1,423,916 - BWI76_RS06785 0.87 +2.1 1,423,916 - BWI76_RS06785 0.87 +2.1 1,423,976 + +0.6 1,424,132 - -0.4 1,424,132 - -0.7 1,424,626 + BWI76_RS06790 0.15 -0.0 1,424,780 - BWI76_RS06790 0.19 +0.3 1,424,792 - BWI76_RS06790 0.20 +0.3 1,424,951 + BWI76_RS06790 0.25 +0.2
Or see this region's nucleotide sequence