Experiment: Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02415 and BWI76_RS02420 are separated by 70 nucleotides BWI76_RS02420 and BWI76_RS02425 are separated by 163 nucleotides BWI76_RS02425 and BWI76_RS02430 are separated by 140 nucleotides BWI76_RS02430 and BWI76_RS02435 overlap by 4 nucleotides BWI76_RS02435 and BWI76_RS02440 are separated by 140 nucleotides
BWI76_RS02415: BWI76_RS02415 - elongation factor P, at 497,957 to 498,523
_RS02415
BWI76_RS02420: BWI76_RS02420 - entericidin EcnAB, at 498,594 to 498,728
_RS02420
BWI76_RS02425: BWI76_RS02425 - entericidin B, at 498,892 to 499,038
_RS02425
BWI76_RS02430: BWI76_RS02430 - multidrug transporter, at 499,179 to 499,496
_RS02430
BWI76_RS02435: BWI76_RS02435 - outer membrane lipoprotein Blc, at 499,493 to 500,023
_RS02435
BWI76_RS02440: BWI76_RS02440 - fumarate reductase subunit D, at 500,164 to 500,523
_RS02440
Position (kb) 499
500 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 498.557 kb on - strand at 498.561 kb on + strand at 498.563 kb on + strand at 498.569 kb on - strand at 498.573 kb on + strand at 498.573 kb on + strand at 498.640 kb on + strand, within BWI76_RS02420 at 498.640 kb on + strand, within BWI76_RS02420 at 498.648 kb on - strand, within BWI76_RS02420 at 498.656 kb on + strand, within BWI76_RS02420 at 498.729 kb on + strand at 498.740 kb on - strand at 498.765 kb on - strand at 498.826 kb on + strand at 498.871 kb on - strand at 498.890 kb on - strand at 498.925 kb on - strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.938 kb on + strand, within BWI76_RS02425 at 498.946 kb on - strand, within BWI76_RS02425 at 498.946 kb on - strand, within BWI76_RS02425 at 498.951 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 498.962 kb on - strand, within BWI76_RS02425 at 499.020 kb on + strand, within BWI76_RS02425 at 499.060 kb on + strand at 499.148 kb on + strand at 499.196 kb on + strand at 499.202 kb on - strand at 499.211 kb on + strand, within BWI76_RS02430 at 499.211 kb on + strand, within BWI76_RS02430 at 499.219 kb on - strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.220 kb on + strand, within BWI76_RS02430 at 499.308 kb on + strand, within BWI76_RS02430 at 499.324 kb on - strand, within BWI76_RS02430 at 499.359 kb on + strand, within BWI76_RS02430 at 499.392 kb on - strand, within BWI76_RS02430 at 499.397 kb on - strand, within BWI76_RS02430 at 499.468 kb on + strand at 499.491 kb on + strand at 499.499 kb on - strand at 499.510 kb on + strand at 499.606 kb on + strand, within BWI76_RS02435 at 499.614 kb on - strand, within BWI76_RS02435 at 499.828 kb on + strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.934 kb on - strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 500.052 kb on + strand at 500.299 kb on - strand, within BWI76_RS02440 at 500.304 kb on + strand, within BWI76_RS02440 at 500.463 kb on - strand, within BWI76_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 498,557 - -0.1 498,561 + +0.5 498,563 + -0.0 498,569 - -0.2 498,573 + -0.1 498,573 + +0.2 498,640 + BWI76_RS02420 0.34 +0.5 498,640 + BWI76_RS02420 0.34 -0.3 498,648 - BWI76_RS02420 0.40 -0.1 498,656 + BWI76_RS02420 0.46 -0.5 498,729 + -0.1 498,740 - +0.2 498,765 - -0.1 498,826 + -0.1 498,871 - -0.5 498,890 - +0.7 498,925 - BWI76_RS02425 0.22 +0.7 498,938 + BWI76_RS02425 0.31 +0.2 498,938 + BWI76_RS02425 0.31 -0.5 498,938 + BWI76_RS02425 0.31 -0.0 498,938 + BWI76_RS02425 0.31 +0.9 498,938 + BWI76_RS02425 0.31 +0.2 498,946 - BWI76_RS02425 0.37 -1.4 498,946 - BWI76_RS02425 0.37 -0.8 498,951 - BWI76_RS02425 0.40 +0.0 498,962 - BWI76_RS02425 0.48 +1.1 498,962 - BWI76_RS02425 0.48 +0.0 498,962 - BWI76_RS02425 0.48 +0.7 499,020 + BWI76_RS02425 0.87 -0.1 499,060 + +0.8 499,148 + +0.7 499,196 + -0.6 499,202 - +0.4 499,211 + BWI76_RS02430 0.10 +0.2 499,211 + BWI76_RS02430 0.10 +0.9 499,219 - BWI76_RS02430 0.13 +0.3 499,220 + BWI76_RS02430 0.13 -1.0 499,220 + BWI76_RS02430 0.13 -1.6 499,308 + BWI76_RS02430 0.41 -0.3 499,324 - BWI76_RS02430 0.46 +0.5 499,359 + BWI76_RS02430 0.57 -0.1 499,392 - BWI76_RS02430 0.67 -0.3 499,397 - BWI76_RS02430 0.69 +5.1 499,468 + -0.3 499,491 + -0.1 499,499 - -0.1 499,510 + -0.6 499,606 + BWI76_RS02435 0.21 -0.5 499,614 - BWI76_RS02435 0.23 -0.1 499,828 + BWI76_RS02435 0.63 +0.8 499,836 - BWI76_RS02435 0.65 -1.0 499,836 - BWI76_RS02435 0.65 -0.1 499,836 - BWI76_RS02435 0.65 -0.8 499,934 - BWI76_RS02435 0.83 +0.5 499,960 + BWI76_RS02435 0.88 -0.2 499,960 + BWI76_RS02435 0.88 -0.1 499,960 + BWI76_RS02435 0.88 -0.1 500,052 + +0.2 500,299 - BWI76_RS02440 0.38 +0.3 500,304 + BWI76_RS02440 0.39 -0.0 500,463 - BWI76_RS02440 0.83 +0.3
Or see this region's nucleotide sequence